BAC Information

Click to search

BAC

Clone NameB6Ng01-103E15
Chromosome13 (Build37)
Map Location 45,078,061 - 45,245,913
singlet/doubletdoublet
Overlap geneDtnbp1, Hsp25-ps1, LOC100039502
Upstream geneA730030A06, EG637868, EG667157, Jarid2
Downstream geneLOC667204, LOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103E15.bB6Ng01-103E15.g
ACCDH911925DH911926
length1,0581,127
definitionDH911925|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E15, 5' end.DH911926|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,244,854 - 45,245,913)(45,078,061 - 45,079,199)
sequence
gaattccacttgacagaggtgggggctctatcaaataacagtgcaatacc
agggatgtgtgggtgactcagggaactcatcctgaaaggtaatgaataca
ctggttttgtcctcgttgacatgaatttaatttctgtgtgggggctcagt
cctttgtatgtgtcttgatggtcctctcttccctgtggaaacctttgccc
catctgctgtggtttggatagtgaatctcccaaaggcttatactaactgc
ttggttccccaaggtgtgagaggctgtgggaatcaagctgaggccttgtg
ggagatccttaggatattgaagccaggctctaaggggaatagtaggaccc
tgtcttagtcagggtttctattcctgcgcaaaacatcatgaccaagaagc
aagttggggaggaaagggtttattcagcttacacttccatactgctgttc
atcaccaaggaagtcaggactggaactcaagcaggtcaggaagcaggagc
tgatgcagaggccatggagggatgtttcttactggcttgcttcccccccc
ctccccaccccctgcgtttgctcagcttgctttcttatagaacccaagac
taccagcccagggatggcactacccacaaggggccctcccccacttgatc
actaattgagaaaatgccccacagccggatctcatggaggcacttcccca
actgaagctcctttctctgtgataactccagcctgtgtcagacccccaac
cccttcttttctctttgcttctgaccatgaacgagaagttttgctctgct
ctgaactcgtatcacaagtgatcttttcccaccaggtctgaaataatggg
gctcacaaatcacagaagcctcccaattttgtgagccaaaacaaattggt
tcctcttttataaattaatcacttcagccttcattattggtaacagaatt
ctggcaccaccaccagcacgcaggagggtgttgaactctaagctaagtgg
cattcatagctcccaagacctcaatctggattctcacttaaattcagcag
aaacagct
gaattcttggagggctttgaaactgctctcacacacaggccacacttacc
caggcttgccatcagagactccaagtcctgcaggagagcgggcagctgct
gcagctgcccctgcagctcgttcaggctggtcctcttcttctcccagtgg
gcagacagcatgaccacctcgctgtccaccagctgcaacacagaccagcg
gggctcaggaaaaccacatctcaagcacacagtcagtcaacgagccgagg
cccggccagtttgtctttagcaaccctccatggtctacagatggcagtga
cactgaagacagtgccacttgtgttgctggtttttcttagaagaggaagg
aactcagtatttgtacagcagacctcaaactgctcttgtatcagacatct
aacccaaagactccaaggtcagaaataagctgacatcttctacgtatgtt
ctactattaaggaaactattcattggaaaattcatacctaggaaaaataa
gacaaaaagcaaacaacaacaaaaaagtaacaaaaagcaaatacacagaa
acaaataaaaaagtgatttactggtaattacttgctaacttgagaagaag
ttaaaatattttgtctggtacacagcataatcttttttaaggcattatag
atcataccatggttcattagataacttgaaaagtctaaaataactaaggt
ttagacaaaaactacttcttaccaaaaatcaaagcacagcatatttaaat
attaaggcttaaaaatggtttattaattctaactttacacaaaactaaaa
attacattctttatataggacataaagtttttaggtagaaagaatatagc
agagtacactaaagtattttaatttaagaaaatgtgagggtgaacaactg
tcaaaccatcacagatgattatacatggtacaacacactagcatctgcta
caagcccgactctgggtaagcaatttagatatatatcttacaaaactaca
tcttctatgttcctcaaagctgccagctacagttgtatgcagagtagctg
gagaaaggtggaacatttcataggtgaggctaggcgtgagaaagctaaca
ccacgggcatgtctgaaagatggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45244854_45245913
seq2: B6Ng01-103E15.b_44_1101 (reverse)

seq1  AGCTGTTTCTGTGCTGGTATTTTAGGTGAGAATCAAGATTGAGGGCTGGG  50
      |||||||||  |||||  | |||| ||||||||| ||||||||| || ||
seq2  AGCTGTTTC--TGCTG--AATTTAAGTGAGAATCCAGATTGAGGTCTTGG  46

seq1  GAGCTAATGGATG-CACCTAGCTTAGGAGTTC-ACACCCTCCTGCCGTGG  98
      ||||| ||| ||| ||| ||||||| |||||| ||||||||||| ||| |
seq2  GAGCT-ATGAATGCCACTTAGCTTA-GAGTTCAACACCCTCCTG-CGT-G  92

seq1  CTGGTGTGTGTGCCAGATTTCTGTTACCATTAATGAAAGCCTGAAGTGAT  148
      ||||||   |||||||| ||||||||||| ||||| ||| ||||||||||
seq2  CTGGTGGTGGTGCCAGAATTCTGTTACCAATAATG-AAGGCTGAAGTGAT  141

seq1  TAATTTAT-AAAGAGGAACC-ATTTGTTTTGGCTCAC-AGATTGGGAGGC  195
      |||||||| ||||||||||| |||||||||||||||| | ||||||||||
seq2  TAATTTATAAAAGAGGAACCAATTTGTTTTGGCTCACAAAATTGGGAGGC  191

seq1  -TCTGTGATTTGTG-GGCCCATTATTTCAGACCT-GTGGGGAAAGATCAC  242
       ||||||||||||| | ||||||||||||||||| ||||| |||||||| 
seq2  TTCTGTGATTTGTGAGCCCCATTATTTCAGACCTGGTGGGAAAAGATCA-  240

seq1  CTTGTGATACGAGTTCAGAGCAGAGCAAAACTTCTCGTTCATGGTCAGAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGATACGAGTTCAGAGCAGAGCAAAACTTCTCGTTCATGGTCAGAA  290

seq1  GCAAAGAGAAAAGAAGGGGTTGGGGGTCTGACACAGGCTGGAGTTATCAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGAAAAGAAGGGGTTGGGGGTCTGACACAGGCTGGAGTTATCAC  340

seq1  AGAGAAAGGAGCTTCAGTTGGGGAAGTGCCTCCATGAGATCCGGCTGTGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGAGCTTCAGTTGGGGAAGTGCCTCCATGAGATCCGGCTGTGG  390

seq1  GGCATTTTCTCAATTAGTGATCAAGTGGGGGAGGGCCCCTTGTGGGTAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTCTCAATTAGTGATCAAGTGGGGGAGGGCCCCTTGTGGGTAGT  440

seq1  GCCATCCCTGGGCTGGTAGTCTTGGGTTCTATAAGAAAGCAAGCTGAGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCCTGGGCTGGTAGTCTTGGGTTCTATAAGAAAGCAAGCTGAGCA  490

seq1  AACGCAGGGGGTGGGGAGGGGGGGGGAAGCAAGCCAGTAAGAAACATCCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAGGGGGTGGGGAGGGGGGGGGAAGCAAGCCAGTAAGAAACATCCC  540

seq1  TCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGT  590

seq1  CCTGACTTCCTTGGTGATGAACAGCAGTATGGAAGTGTAAGCTGAATAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTCCTTGGTGATGAACAGCAGTATGGAAGTGTAAGCTGAATAAA  640

seq1  CCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTTGCGCAGGAATA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTTGCGCAGGAATA  690

seq1  GAAACCCTGACTAAGACAGGGTCCTACTATTCCCCTTAGAGCCTGGCTTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGACTAAGACAGGGTCCTACTATTCCCCTTAGAGCCTGGCTTC  740

seq1  AATATCCTAAGGATCTCCCACAAGGCCTCAGCTTGATTCCCACAGCCTCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTAAGGATCTCCCACAAGGCCTCAGCTTGATTCCCACAGCCTCT  790

seq1  CACACCTTGGGGAACCAAGCAGTTAGTATAAGCCTTTGGGAGATTCACTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTGGGGAACCAAGCAGTTAGTATAAGCCTTTGGGAGATTCACTA  840

seq1  TCCAAACCACAGCAGATGGGGCAAAGGTTTCCACAGGGAAGAGAGGACCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCACAGCAGATGGGGCAAAGGTTTCCACAGGGAAGAGAGGACCA  890

seq1  TCAAGACACATACAAAGGACTGAGCCCCCACACAGAAATTAAATTCATGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACACATACAAAGGACTGAGCCCCCACACAGAAATTAAATTCATGT  940

seq1  CAACGAGGACAAAACCAGTGTATTCATTACCTTTCAGGATGAGTTCCCTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGAGGACAAAACCAGTGTATTCATTACCTTTCAGGATGAGTTCCCTG  990

seq1  AGTCACCCACACATCCCTGGTATTGCACTGTTATTTGATAGAGCCCCCAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCACACATCCCTGGTATTGCACTGTTATTTGATAGAGCCCCCAC  1040

seq1  CTCTGTCAAGTGGAATTC  1060
      ||||||||||||||||||
seq2  CTCTGTCAAGTGGAATTC  1058

seq1: chr13_45078061_45079199
seq2: B6Ng01-103E15.g_67_1193

seq1  GAATTCTTGGAGGGCTTTGAAACTGCTCTCACACACAGGCCACACTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGGGCTTTGAAACTGCTCTCACACACAGGCCACACTTACC  50

seq1  CAGGCTTGCCATCAGAGACTCCAAGTCCTGCAGGAGAGCGGGCAGCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGCCATCAGAGACTCCAAGTCCTGCAGGAGAGCGGGCAGCTGCT  100

seq1  GCAGCTGCCCCTGCAGCTCGTTCAGGCTGGTCCTCTTCTTCTCCCAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCCCCTGCAGCTCGTTCAGGCTGGTCCTCTTCTTCTCCCAGTGG  150

seq1  GCAGACAGCATGACCACCTCGCTGTCCACCAGCTGCAACACAGACCAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGCATGACCACCTCGCTGTCCACCAGCTGCAACACAGACCAGCG  200

seq1  GGGCTCAGGAAAACCACATCTCAAGCACACAGTCAGTCAACGAGCCGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGGAAAACCACATCTCAAGCACACAGTCAGTCAACGAGCCGAGG  250

seq1  CCCGGCCAGTTTGTCTTTAGCAACCCTCCATGGTCTACAGATGGCAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCCAGTTTGTCTTTAGCAACCCTCCATGGTCTACAGATGGCAGTGA  300

seq1  CACTGAAGACAGTGCCACTTGTGTTGCTGGTTTTTCTTAGAAGAGGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGACAGTGCCACTTGTGTTGCTGGTTTTTCTTAGAAGAGGAAGG  350

seq1  AACTCAGTATTTGTACAGCAGACCTCAAACTGCTCTTGTATCAGACATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTATTTGTACAGCAGACCTCAAACTGCTCTTGTATCAGACATCT  400

seq1  AACCCAAAGACTCCAAGGTCAGAAATAAGCTGACATCTTCTACGTATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAGACTCCAAGGTCAGAAATAAGCTGACATCTTCTACGTATGTT  450

seq1  CTACTATTAAGGAAACTATTCATTGGAAAATTCATACCTAGGAAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATTAAGGAAACTATTCATTGGAAAATTCATACCTAGGAAAAATAA  500

seq1  GACAAAAAGCAAACAACAACAAAAAAGTAACAAAAAGCAAATACACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAGCAAACAACAACAAAAAAGTAACAAAAAGCAAATACACAGAA  550

seq1  ACAAATAAAAAAGTGATTTACTGGTAATTACTTGCTAACTTGAGAAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAAAAAGTGATTTACTGGTAATTACTTGCTAACTTGAGAAGAAG  600

seq1  TTAAAATATTTTGTCTGGTACACAGCATAATCTTTTTTAAGGCATTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATTTTGTCTGGTACACAGCATAATCTTTTTTAAGGCATTATAG  650

seq1  ATCATACCATGGTTCATTAGATAACTTGAAAAGTCTAAAATAACTAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACCATGGTTCATTAGATAACTTGAAAAGTCTAAAATAACTAAGGT  700

seq1  TTAGACAAAAACTACTTCTTACCAAAAATCAAAGCACAGCATATTTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAAAAACTACTTCTTACCAAAAATCAAAGCACAGCATATTTAAAT  750

seq1  ATTAAGGCTTAAAAATGGTTTATTAATTCTAACTTTACACAAAACTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGCTTAAAAATGGTTTATTAATTCTAACTTTACACAAAACTAAAA  800

seq1  ATTACATTCTTTATATAGGACATAAAGTTTTTAGGTAGAAAGAATATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTCTTTATATAGGACATAAAGTTTTTAGGTAGAAAGAATATAGC  850

seq1  AGAGTACACTAAAGTATTTTAATTTAAGAAAATGTGAGGGTGAACAACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACACTAAAGTATTTTAATTTAAGAAAATGTGAGGGTGAACAACTG  900

seq1  TCAAACCATCACAGATGATTATACAATGGTACAACACACTAAGCATCTGC  950
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  TCAAACCATCACAGATGATTATAC-ATGGTACAACACACT-AGCATCTGC  948

seq1  TACAAGCCCGACTCTGGGTTAAGCAATTTAGATATATTATCTTACAAAAA  1000
      |||||||||||||||||| ||||||||||||||||| |||||||| ||||
seq2  TACAAGCCCGACTCTGGG-TAAGCAATTTAGATATA-TATCTTAC-AAAA  995

seq1  CTACATCTTCTATGTTCCTCAAAGGCTTGCAAGCTAACAG-TGTATGCAG  1049
      ||||||||||||||||||||||||   ||| |||| |||| |||||||||
seq2  CTACATCTTCTATGTTCCTCAAAG--CTGCCAGCT-ACAGTTGTATGCAG  1042

seq1  AGTAGCTGGGAGACA-GTGGAACATTTCATAGGTGAGGCTAAGCGTGAGA  1098
      ||||||| ||||| | ||||||||||||||||||||||||| ||||||||
seq2  AGTAGCT-GGAGAAAGGTGGAACATTTCATAGGTGAGGCTAGGCGTGAGA  1091

seq1  AAGCTAAACCACCACGGGCATGTCTTTGAAAGGATGGGGAT  1139
      |||||||  |||||||||||||||  ||||| |||||||||
seq2  AAGCTAA--CACCACGGGCATGTC--TGAAA-GATGGGGAT  1127