BAC Information

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BAC

Clone NameB6Ng01-103H05
Chromosome13 (Build37)
Map Location 57,791,079 - 57,937,161
singlet/doubletdoublet
Overlap geneSpock1
Upstream geneSmad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103H05.bB6Ng01-103H05.g
ACCDH912035DH912036
length1,1611,017
definitionDH912035|Mus musculus domesticus DNA, BAC clone: B6Ng01-103H05, 5' end.DH912036|Mus musculus domesticus DNA, BAC clone: B6Ng01-103H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,935,987 - 57,937,161)(57,791,079 - 57,792,092)
sequence
gaattcccctttctcttcctcatctcctagcctgcctgcaggaacgtgga
agtcctacctcttctgcccagccattggccactagcatctctattgatgg
atcaagaaccaattggggaacaggactttcagcatttacgtgcagattcc
agatcagagcgtcagaaccacccctccacttcccttttaaatttctaaaa
ctggtgctctagggtgacatgagagtgttttaggattggttttactcttg
ggtactcgttggggtgaacaggtgaaggtttgctgtgttagaggttctag
gtacgcttccgtgtcctccaaaccaggattcaaatgcagatgtgggtgag
cctcagttctccccagggctcattgttctattacctgttggcattgcgtt
gctggacctatttcataattactcacatatattcttttgttggaggtgaa
cttggcagcagcattgcaggttgtggctgtttggaaggaaggtcactgac
actacgtggtggcacagagggaaagatccacaagtgagcaggggcacgtg
gcaggtggagagggtctcacattccactgcttctagctccacagacctga
tgggagtcaagaaaacaaacagccgggagagatcaataagcatgttagta
atacatgtgcacacaaggcagcccatccattccattacatccaatctcaa
atgttggtttaaaatattagcttcgtgaaaacaccttagaaatagtcaat
agaaacaaggggcagcatgacatttttatatccaaagtatgttttcttat
acttatcaatgtggacagaacctttggtagatatatttatatattttaag
aataagaagtccaaaataaaaacccagggagattttttttattaaaaaaa
aaacccagtttcattgagaaataacttatatgcactaaaacccacctatt
taaagtgtgcggtttgagattcagcaaatgtatgcagcttgtaaatcctg
ccataatcagactgagacgtctcatcgcatcagctccttcgtgtccctgc
atcagtcctcagccccagggagacttgccaccgctcatcacttttgacgg
agcagtatacatataattaggaaccaatgtggtatgatcttaggcctgcc
tctttcctttt
gaattcatctaagccaaagctggctcgctgtggctcaacaaacacaatgc
aatcaatccagaggccgttggcccacccgcagtacagaatcgtatgtagc
acgcccctcttgaataaaatctattagcaaataagtttgaggggagttat
gagcatggctttagaatggaatggatgttctgaggaggctcatctgtgga
aacaagaagctacaatgtccatgaacacaagatgaggtttttactgccct
catgactccattatccttcccccatttggagttaagagattgcagaggcc
agagggtcccagagcatgacaggcacatttgtccccacactgggggagga
tgggatcctgcacaagtgcacctcgcagattagactggaaggggcacgga
ttcattagggacattctacacccaacagccccacagcccttgggagcata
accactttcacaaatctctatggagatggaatcacacggtagtgcctctc
tacagatgaggaagtaaagggtatatcaatgggggcactgaggaatggtg
gtacatctcagccaagatctaaccaggagcccttcacccccttccctatc
cttcacacccctgcaaggtcccataggactctgagataagaaaccagccc
ctgcttgggcctttctttctgcttacactaaatgcctctcccctccctgg
tggttaaaaggcccatttaattctactggctttattgaagttatattcat
acctcattggttagcctgtagctttaaaaagaagaacattatgttttgag
tgtttcatttgtcttttcctctatgagaaaacatatacagaaaggatgct
ctcagaacttagcgttcatgattgcaagggtctgagaaacctttatatcg
gttgacaggcacctttagttaagggacgatattggggtttgccaaagcca
gccatttaatacccggctccgttgtggttgtcttagtgggggttactatc
tctgtgggtaaacaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_57935987_57937161
seq2: B6Ng01-103H05.b_43_1203 (reverse)

seq1  AAAAGAAAAGAGGCCAGGCACTAAAGATCATA-CACATATGTTCCTATTT  49
      ||||| ||||||| ||||| || ||||||||| |||||  ||||||| ||
seq2  AAAAGGAAAGAGG-CAGGC-CT-AAGATCATACCACATTGGTTCCTAATT  47

seq1  ATATGTATAACTTGCTCTGTCAAAAAGGTGATGAGCGGTGGGCAAGTCT-  98
      |||||||||   ||||| |||||||  |||||||||||| ||||||||| 
seq2  ATATGTATA--CTGCTCCGTCAAAA--GTGATGAGCGGT-GGCAAGTCTC  92

seq1  CCTGGGGCTGAGGGACTGATTGCAGGGGACACGAGGGAGCTTGATGGCGA  148
      ||||||||||| ||||||| |||| ||||||||| ||||| |||| ||||
seq2  CCTGGGGCTGA-GGACTGA-TGCA-GGGACACGAAGGAGC-TGAT-GCGA  137

seq1  TGGAGACGTTCTCAGTCTTGATTATGGCAGGATTTACAAGCTGCATACAT  198
      | |||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  T-GAGACG-TCTCAGTC-TGATTATGGCAGGATTTACAAGCTGCATACAT  184

seq1  TTGCTGAATCTCAAACCGCACACTTTAAATAGGTGGGTTTTAGTGCATAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAATCTCAAACCGCACACTTTAAATAGGTGGGTTTTAGTGCATAT  234

seq1  AAGTTATTTCTCAATGAAACTGGGTTTTTTTTTTAATAAAAAAAATCTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTTCTCAATGAAACTGGGTTTTTTTTTTAATAAAAAAAATCTCC  284

seq1  CTGGGTTTTTATTTTGGACTTCTTATTCTTAAAATATATAAATATATCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTTTATTTTGGACTTCTTATTCTTAAAATATATAAATATATCTA  334

seq1  CCAAAGGTTCTGTCCACATTGATAAGTATAAGAAAACATACTTTGGATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGTTCTGTCCACATTGATAAGTATAAGAAAACATACTTTGGATAT  384

seq1  AAAAATGTCATGCTGCCCCTTGTTTCTATTGACTATTTCTAAGGTGTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTCATGCTGCCCCTTGTTTCTATTGACTATTTCTAAGGTGTTTT  434

seq1  CACGAAGCTAATATTTTAAACCAACATTTGAGATTGGATGTAATGGAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAGCTAATATTTTAAACCAACATTTGAGATTGGATGTAATGGAATG  484

seq1  GATGGGCTGCCTTGTGTGCACATGTATTACTAACATGCTTATTGATCTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCTGCCTTGTGTGCACATGTATTACTAACATGCTTATTGATCTCT  534

seq1  CCCGGCTGTTTGTTTTCTTGACTCCCATCAGGTCTGTGGAGCTAGAAGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCTGTTTGTTTTCTTGACTCCCATCAGGTCTGTGGAGCTAGAAGCA  584

seq1  GTGGAATGTGAGACCCTCTCCACCTGCCACGTGCCCCTGCTCACTTGTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGTGAGACCCTCTCCACCTGCCACGTGCCCCTGCTCACTTGTGG  634

seq1  ATCTTTCCCTCTGTGCCACCACGTAGTGTCAGTGACCTTCCTTCCAAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCCTCTGTGCCACCACGTAGTGTCAGTGACCTTCCTTCCAAACA  684

seq1  GCCACAACCTGCAATGCTGCTGCCAAGTTCACCTCCAACAAAAGAATATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAACCTGCAATGCTGCTGCCAAGTTCACCTCCAACAAAAGAATATA  734

seq1  TGTGAGTAATTATGAAATAGGTCCAGCAACGCAATGCCAACAGGTAATAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTAATTATGAAATAGGTCCAGCAACGCAATGCCAACAGGTAATAG  784

seq1  AACAATGAGCCCTGGGGAGAACTGAGGCTCACCCACATCTGCATTTGAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAGCCCTGGGGAGAACTGAGGCTCACCCACATCTGCATTTGAAT  834

seq1  CCTGGTTTGGAGGACACGGAAGCGTACCTAGAACCTCTAACACAGCAAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTGGAGGACACGGAAGCGTACCTAGAACCTCTAACACAGCAAAC  884

seq1  CTTCACCTGTTCACCCCAACGAGTACCCAAGAGTAAAACCAATCCTAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCTGTTCACCCCAACGAGTACCCAAGAGTAAAACCAATCCTAAAA  934

seq1  CACTCTCATGTCACCCTAGAGCACCAGTTTTAGAAATTTAAAAGGGAAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCATGTCACCCTAGAGCACCAGTTTTAGAAATTTAAAAGGGAAGT  984

seq1  GGAGGGGTGGTTCTGACGCTCTGATCTGGAATCTGCACGTAAATGCTGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGTGGTTCTGACGCTCTGATCTGGAATCTGCACGTAAATGCTGAA  1034

seq1  AGTCCTGTTCCCCAATTGGTTCTTGATCCATCAATAGAGATGCTAGTGGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGTTCCCCAATTGGTTCTTGATCCATCAATAGAGATGCTAGTGGC  1084

seq1  CAATGGCTGGGCAGAAGAGGTAGGACTTCCACGTTCCTGCAGGCAGGCTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTGGGCAGAAGAGGTAGGACTTCCACGTTCCTGCAGGCAGGCTA  1134

seq1  GGAGATGAGGAAGAGAAAGGGGAATTC  1175
      |||||||||||||||||||||||||||
seq2  GGAGATGAGGAAGAGAAAGGGGAATTC  1161

seq1: chr13_57791079_57792092
seq2: B6Ng01-103H05.g_71_1087

seq1  GAATTCATCTAAGCCAAAGCTGGCTCGCTGTGGCTCAACAAACACAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAAGCCAAAGCTGGCTCGCTGTGGCTCAACAAACACAATGC  50

seq1  AATCAATCCAGAGGCCGTTGGCCCACCCGCAGTACAGAATCGTATGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCCAGAGGCCGTTGGCCCACCCGCAGTACAGAATCGTATGTAGC  100

seq1  ACGCCCCTCTTGAATAAAATCTATTAGCAAATAAGTTTGAGGGGAGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCCTCTTGAATAAAATCTATTAGCAAATAAGTTTGAGGGGAGTTAT  150

seq1  GAGCATGGCTTTAGAATGGAATGGATGTTCTGAGGAGGCTCATCTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGGCTTTAGAATGGAATGGATGTTCTGAGGAGGCTCATCTGTGGA  200

seq1  AACAAGAAGCTACAATGTCCATGAACACAAGATGAGGTTTTTACTGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAGCTACAATGTCCATGAACACAAGATGAGGTTTTTACTGCCCT  250

seq1  CATGACTCCATTATCCTTCCCCCATTTGGAGTTAAGAGATTGCAGAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTCCATTATCCTTCCCCCATTTGGAGTTAAGAGATTGCAGAGGCC  300

seq1  AGAGGGTCCCAGAGCATGACAGGCACATTTGTCCCCACACTGGGGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTCCCAGAGCATGACAGGCACATTTGTCCCCACACTGGGGGAGGA  350

seq1  TGGGATCCTGCACAAGTGCACCTCGCAGATTAGACTGGAAGGGGCACGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCTGCACAAGTGCACCTCGCAGATTAGACTGGAAGGGGCACGGA  400

seq1  TTCATTAGGGACATTCTACACCCAACAGCCCCACAGCCCTTGGGAGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGGGACATTCTACACCCAACAGCCCCACAGCCCTTGGGAGCATA  450

seq1  ACCACTTTCACAAATCTCTATGGAGATGGAATCACACGGTAGTGCCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTCACAAATCTCTATGGAGATGGAATCACACGGTAGTGCCTCTC  500

seq1  TACAGATGAGGAAGTAAAGGGTATATCAATGGGGGCACTGAGGAATGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGAGGAAGTAAAGGGTATATCAATGGGGGCACTGAGGAATGGTG  550

seq1  GTACATCTCAGCCAAGATCTAACCAGGAGCCCTTCACCCCCTTCCCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTCAGCCAAGATCTAACCAGGAGCCCTTCACCCCCTTCCCTATC  600

seq1  CTTCACACCCCTGCAAGGTCCCATAGGACTCTGAGATAAGAAACCAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACCCCTGCAAGGTCCCATAGGACTCTGAGATAAGAAACCAGCCC  650

seq1  CTGCTTGGGCCTTTCTTTCTGCTTACACTAAATGCCTCTCCCCTCCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGGCCTTTCTTTCTGCTTACACTAAATGCCTCTCCCCTCCCTGG  700

seq1  TGGTTAAAAGGCCCATTTAATTCTACTGGTTTTATTGAAGTTATATTCAT  750
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGTTAAAAGGCCCATTTAATTCTACTGGCTTTATTGAAGTTATATTCAT  750

seq1  ACCTCATTGGTTAGCCTGTAGCTTTAAAAAGAAGAACATTATGTTTTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATTGGTTAGCCTGTAGCTTTAAAAAGAAGAACATTATGTTTTGAG  800

seq1  TGTTTCATTTGTC-TTTCCTCTATGAGAAAACATATACAG-AAGGATGCT  848
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  TGTTTCATTTGTCTTTTCCTCTATGAGAAAACATATACAGAAAGGATGCT  850

seq1  CTCAGAACTTAGCGTTCATGATTGCAAGGGTCTGAGAAACCTTTATATCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACTTAGCGTTCATGATTGCAAGGGTCTGAGAAACCTTTATATCG  900

seq1  G-TGACAGGCAACCTCAAGTTAAGGGAGGACA-TGGGGTTTGCCAAAGCC  946
      | |||||||| ||||  |||||||||| || | |||||||||||||||||
seq2  GTTGACAGGC-ACCTTTAGTTAAGGGACGATATTGGGGTTTGCCAAAGCC  949

seq1  AGCCATTTTAATA-CCGGCATCGTTGTGGTTGTCTTAGTTGGGGTTACTA  995
      ||||| ||||||| |||||  |||||||||||||||||| ||||||||||
seq2  AGCCA-TTTAATACCCGGCTCCGTTGTGGTTGTCTTAGTGGGGGTTACTA  998

seq1  TCTCTGTGGTTAAACACCG  1014
      ||||||||| |||||||||
seq2  TCTCTGTGGGTAAACACCG  1017