BAC Information

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BAC

Clone NameB6Ng01-103J10
Chromosome13 (Build37)
Map Location 64,033,265 - 64,217,526
singlet/doubletdoublet
Overlap geneEG665575, Hsd17b3, Slc35d2
Upstream geneLOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik
Downstream geneZfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103J10.bB6Ng01-103J10.g
ACCDH912127DH912128
length9871,058
definitionDH912127|Mus musculus domesticus DNA, BAC clone: B6Ng01-103J10, 5' end.DH912128|Mus musculus domesticus DNA, BAC clone: B6Ng01-103J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,216,526 - 64,217,526)(64,033,265 - 64,034,332)
sequence
gaattcaaagaattgcctttgctacataatgagtttgagggtagctttgg
ggagacccccaaaagagtatatgtacagtgtagccatcaccaatctttat
ttcagaaactttttctatgttgtgtgtgtgtctttttttgtttttgtttg
tttgttttttgtttttttgttttttcgagacagggtttctctgtatagcc
ctggctgtcctggagctcactttgtagaccaggctggcctcgaactcaga
aatcctcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccac
cacgcccggctgtgtgtgtgtcttagttaggattttattgctgtgaacag
acaccatgaccagttcaaatcttgtaaaggacaacatttaattggggctg
gcttacaggtcagaggttcagtcagttatcatcaaggtgggagcatggca
gcatccaggcagatatggtgcagaaggagctgagagttctacatctttat
ctgaaggctgctaagagaataaaccataggcagctagatgaggatcttat
ttcccacacccacagtgacacacctgctccaacaaggccacacccactcc
aacaaggccacacctcccaacagtgccactccctgggccaagcatatata
agccattactctctctctctctcttttcctctctctctctctctctctct
ctctgtgtgtgtgtgtgtgtgtgtgtgtatgtgtacgtgtgtgaatgaat
gatgtatgtagcaatccagtttcatatatttgtgggagttatagatgtct
tgcctcatccattgaaaaatatttcttttccattgtgttatctgacgacc
ctgataaaaaaaaaatcaatcttactggtctgggagagtggcccctttct
tttacttttctgaaagaggtgggaggaccacaagtttgtaccacctggct
gtatttgctgcttctgtgtctaggcagtttgcaagga
gaattccagagtctgccccttgaccccgcaggtgcttatcgaaaatacat
actattaacaacaaagatggatggggatgtatgactcaactggtagtgtg
cttacctaaaatgcacaaagctctgggtttgatcccagcattgcatcaac
tgggtgaggtagcatagacttgtaaccccagcacctggaagatggagaca
agaggatcagaatttcaaagtcaccttcaggtacttagagagtttgaggt
cagtctaagctacatgagaccccatcacaagagcaactaccaccaccatc
accaccaaaaaaaaaaaaaaaaaaaaaaaagcaagataaattagattggc
tttgttccagcagagaagtgtaggggcttacagcgagcccttgggtggca
tattataacggagcttttacattgtccttccaaaattccctcctctctaa
aagtagatgatagaggtcagagcagcagcaatcaacagtgtagccttggc
acaaagacaaatgtttaaatgagaaaagaatccagggtgcgcataaagag
aaagacatttgaaggggaaaaaaaggcagtgccctccaactttattgtcc
tgaggtttatggccgtggtcacctcccagagaaggcagagggcaaagcat
ggccacttgctgtgtcttaaactctcacctgtgaatcttttaaaaattac
tctctcagattcattctctctgttgtctgtgaaattcagtttttctttga
gttatgagacataagatccagaagccactgacctgaggagtgagtggtcc
ctggctttcgggactccccacctactaaagctattgcccacctgaggctc
tctgtcacttctcaggcccccagcttcccctcctgagaatctattcctcc
tcttttctgtttcttctctttggaaagtgctctgtatcctggtgctcgct
gtagaagggaatctgcccaggttgcagttgtacttggaatatctgatcca
atgagactctggttgagaactcttgattgatgtgaacactagactgctgg
actgtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64216526_64217526
seq2: B6Ng01-103J10.b_42_1028 (reverse)

seq1  TCCTTGCAAACTTGCCTAGACACAGGAAGCAGACAAATGCAGCCCAGGCT  50
      ||||||||||| |||||||||||| ||||||| ||||| ||| ||||| |
seq2  TCCTTGCAAAC-TGCCTAGACACA-GAAGCAG-CAAATACAG-CCAGG-T  45

seq1  GGTACAAAACTTGTGGTCCTCCCACCTCTGTCTCAGAAAAAGTAAAATGA  100
      ||||| ||||||||||||||||||||||  | |||| |||||||||| ||
seq2  GGTAC-AAACTTGTGGTCCTCCCACCTC--TTTCAG-AAAAGTAAAA-GA  90

seq1  AAGGGGCCACCTCTCCCAGACCAGT-AGATTGATTTTTTTTTTATCAAGG  149
      ||||||||| ||||||||||||||| |||||||||||||||||||| |||
seq2  AAGGGGCCA-CTCTCCCAGACCAGTAAGATTGATTTTTTTTTTATC-AGG  138

seq1  GTCGTCAGATAACACAATGGAAAAAGAAATATTTTTTCAATGGATGGTGG  199
      |||||||||||||||||||| |||||||||| ||||||||||||| | ||
seq2  GTCGTCAGATAACACAATGG-AAAAGAAATA-TTTTTCAATGGAT-GAGG  185

seq1  CAAGACATCTATAACTCCCACAAATATATGAAACTGGATTGCTACATACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATCTATAACTCCCACAAATATATGAAACTGGATTGCTACATACA  235

seq1  TCATTCATTCACACACGTACACATACACACACACACACACACACACACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTCACACACGTACACATACACACACACACACACACACACACAG  285

seq1  AGAGAGAGAGAGAGAGAGAGAGAGGAAAAGAGAGAGAGAGAGAGTAATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGGAAAAGAGAGAGAGAGAGAGTAATGG  335

seq1  CTTATATATGCTTGGCCCAGGGAGTGGCACTGTTGGGAGGTGTGGCCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATATGCTTGGCCCAGGGAGTGGCACTGTTGGGAGGTGTGGCCTTG  385

seq1  TTGGAGTGGGTGTGGCCTTGTTGGAGCAGGTGTGTCACTGTGGGTGTGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGGGTGTGGCCTTGTTGGAGCAGGTGTGTCACTGTGGGTGTGGG  435

seq1  AAATAAGATCCTCATCTAGCTGCCTATGGTTTATTCTCTTAGCAGCCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGATCCTCATCTAGCTGCCTATGGTTTATTCTCTTAGCAGCCTTC  485

seq1  AGATAAAGATGTAGAACTCTCAGCTCCTTCTGCACCATATCTGCCTGGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGATGTAGAACTCTCAGCTCCTTCTGCACCATATCTGCCTGGAT  535

seq1  GCTGCCATGCTCCCACCTTGATGATAACTGACTGAACCTCTGACCTGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATGCTCCCACCTTGATGATAACTGACTGAACCTCTGACCTGTAA  585

seq1  GCCAGCCCCAATTAAATGTTGTCCTTTACAAGATTTGAACTGGTCATGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCCCAATTAAATGTTGTCCTTTACAAGATTTGAACTGGTCATGGT  635

seq1  GTCTGTTCACAGCAATAAAATCCTAACTAAGACACACACACAGCCGGGCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCACAGCAATAAAATCCTAACTAAGACACACACACAGCCGGGCG  685

seq1  TGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGA  735

seq1  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCC  785

seq1  AGGGCTATACAGAGAAACCCTGTCTCGAAAAAACAAAAAAACAAAAAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTATACAGAGAAACCCTGTCTCGAAAAAACAAAAAAACAAAAAACA  835

seq1  AACAAACAAAAACAAAAAAAGACACACACACAACATAGAAAAAGTTTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAACAAAAAAAGACACACACACAACATAGAAAAAGTTTCTG  885

seq1  AAATAAAGATTGGTGATGGCTACACTGTACATATACTCTTTTGGGGGTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGATTGGTGATGGCTACACTGTACATATACTCTTTTGGGGGTCT  935

seq1  CCCCAAAGCTACCCTCAAACTCATTATGTAGCAAAGGCAATTCTTTGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGCTACCCTCAAACTCATTATGTAGCAAAGGCAATTCTTTGAAT  985

seq1  TC  1001
      ||
seq2  TC  987

seq1: chr13_64033265_64034332
seq2: B6Ng01-103J10.g_68_1125

seq1  GAATTCCAGAGTCTGCCCCTTGACCCCGCAGGTGCTTATCGAAAATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTCTGCCCCTTGACCCCGCAGGTGCTTATCGAAAATACAT  50

seq1  ACTATTAACAACAAAGATGGATGGGGATGTATGACTCAACTGGTAGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAACAACAAAGATGGATGGGGATGTATGACTCAACTGGTAGTGTG  100

seq1  CTTACCTAAAATGCACAAAGCTCTGGGTTTGATCCCAGCATTGCATCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTAAAATGCACAAAGCTCTGGGTTTGATCCCAGCATTGCATCAAC  150

seq1  TGGGTGAGGTAGCATAGACTTGTAACCCCAGCACCTGGAAGATGGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAGGTAGCATAGACTTGTAACCCCAGCACCTGGAAGATGGAGACA  200

seq1  AGAGGATCAGAATTTCAAAGTCACCTTCAGGTACTTAGAGAGTTTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCAGAATTTCAAAGTCACCTTCAGGTACTTAGAGAGTTTGAGGT  250

seq1  CAGTCTAAGCTACATGAGACCCCATCACAAGAGCAACTACCACCACCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAAGCTACATGAGACCCCATCACAAGAGCAACTACCACCACCATC  300

seq1  ACCACCAAAAAAAAAAAAAAAAAAAAAAAAGCAAGATAAATTAGATTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAAAAAAAAAAAAAAAAAAAAAAAAGCAAGATAAATTAGATTGGC  350

seq1  TTTGTTCCAGCAGAGAAGTGTAGGGGCTTACAGCGAGCCCTTGGGTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCAGCAGAGAAGTGTAGGGGCTTACAGCGAGCCCTTGGGTGGCA  400

seq1  TATTATAACGGAGCTTTTACATTGTCCTTCCAAAATTCCCTCCTCTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAACGGAGCTTTTACATTGTCCTTCCAAAATTCCCTCCTCTCTAA  450

seq1  AAGTAGATGATAGAGGTCAGAGCAGCAGCAATCAACAGTGTAGCCTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATGATAGAGGTCAGAGCAGCAGCAATCAACAGTGTAGCCTTGGC  500

seq1  ACAAAGACAAATGTTTAAATGAGAAAAGAATCCAGGGTGCGCATAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACAAATGTTTAAATGAGAAAAGAATCCAGGGTGCGCATAAAGAG  550

seq1  AAAGACATTTGAAGGGGAAAAAAAGGCAGTGCCCTCCAACTTTATTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATTTGAAGGGGAAAAAAAGGCAGTGCCCTCCAACTTTATTGTCC  600

seq1  TGAGGTTTATGGCCGTGGTCACCTCCCAGAGAAGGCAGAGGGCAAAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTATGGCCGTGGTCACCTCCCAGAGAAGGCAGAGGGCAAAGCAT  650

seq1  GGCCACTTGCTGTGTCTTAAACTCTCACCTGTGAATCTTTTAAAAATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTTGCTGTGTCTTAAACTCTCACCTGTGAATCTTTTAAAAATTAC  700

seq1  TCTCTCAGATTCATTCTCTCTGTTGTCTGTGAAATTCAGTTTTTCTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGATTCATTCTCTCTGTTGTCTGTGAAATTCAGTTTTTCTTTGA  750

seq1  GTTATGAGACATAAGATCCAGAAGCCACTGACCTGAGGAGTGAGTGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAGACATAAGATCCAGAAGCCACTGACCTGAGGAGTGAGTGGTCC  800

seq1  CTGGCTTTTCGGGACTCCCCACCTACTAAAGCTATTGCCCACCTGAGGCT  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGC-TTTCGGGACTCCCCACCTACTAAAGCTATTGCCCACCTGAGGCT  849

seq1  CTCTGTCAC-TCTCAGGGCCCCCAGCTTCCCCTCCTGAG-ATCTATTCCT  898
      ||||||||| ||||| ||||||||||||||||||||||| ||||||||||
seq2  CTCTGTCACTTCTCA-GGCCCCCAGCTTCCCCTCCTGAGAATCTATTCCT  898

seq1  CCTCTTTCCTGTTTCTTCCCTTTGGAAAGTGCTCTGTATCCT-GTGCTCG  947
      ||||||| |||||||||| ||||||||||||||||||||||| |||||||
seq2  CCTCTTTTCTGTTTCTTCTCTTTGGAAAGTGCTCTGTATCCTGGTGCTCG  948

seq1  CTGTAGGAAGGGAATCTGCCCAGGTTGCAGTTGTACCTTGAATATCTGAT  997
      ||||| |||||||||||||||||||||||||||||| | |||||||||| 
seq2  CTGTA-GAAGGGAATCTGCCCAGGTTGCAGTTGTACTTGGAATATCTGA-  996

seq1  TCAAATGAGACTCTGGGTTTGAG-ACTCTTGAATTGATGTTGGAACAACC  1046
      || |||||||||||||  ||||| ||||||| ||||||||  |||||  |
seq2  TCCAATGAGACTCTGG--TTGAGAACTCTTG-ATTGATGT--GAACA--C  1039

seq1  TAAGACTGCTGGGGACTGTCAG  1068
      | ||||||||  ||||||||||
seq2  T-AGACTGCT--GGACTGTCAG  1058