BAC Information

Click to search

BAC

Clone NameB6Ng01-104B13
Chromosome13 (Build37)
Map Location 40,650,375 - 40,732,719
singlet/doubletdoublet
Overlap geneLOC100039048
Upstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894
Downstream geneTcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104B13.bB6Ng01-104B13.g
ACCDH912495DH912496
length1,0761,006
definitionDH912495|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B13, 5' end.DH912496|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,731,642 - 40,732,719)(40,650,375 - 40,651,384)
sequence
gaattcacaatagcgaacaaaactgaatggaaatcacataaaaccaaact
cagtgaaatgtgtcaatagaacaccaccctgcacttgacaactttgcgtt
ttatttcagagaattttatttattattatgtatttttaaaagatttattt
atttaattaatatacttatgggtactctgtcactgtcttgtgacacacca
gaagagggcatctgatcccattaaagacagttgtaagtctccatgtggtt
gctgggatttgaactcaggacctctggaagagcagtcagtgctcttaacc
gctgagccatctctccagcccctcagagaattttataaactacatacttt
ttgggaaaaaaaaagcacacctaaatattttgagagaagaattgtctttt
cttgatatcttgaaaggtggcccatgcaaacgaaacagaaacaaacaaac
aaacaaacgccaaaaagcacctttgcaatttttttttctatatcaaattt
tcaccaggcaatgttagaaaaggtgttatttaacagggggcagatagatg
actcagtggttatgagctcttcctggccgctctttcagaagacctggttc
aatttgcagcccccatgtaatggttcccaagcatatgtaaccccagttcc
aggggactgaatgctttcatctgtcctctgtcaccatcaggcacacgcgt
ggtgcatagacacaggaggaggccgaacaccgatgcacgtaaaataagat
taaagttaggaaaaaaattaagattcacttcagtgtgctctgattgtcat
tgccacttgtgctgtacgaattgagcaagcaaagagaaggtggctttcat
cttcatggtccctgccctgagtcagtctgctttcctacaggtggaggttg
agctgtgtttgtttctgtccctacttgcccctctgggccgcagtgagtct
tctgcaactcctaacctgcacatccttttatttatttttttaagagacga
cacagctttaacaaactttgtctcgcttttggaagctgccacatatcact
ctttcctttgctgggtgaaatttcac
gaattccaggggcagcctgagctatagagaaagacctttttttttttttt
ttttaagtttgtaagttaactaagttggtacaattcttgccttgcaagta
tgacaagctcaagtccatatccagaagccagtgctgggcaggaggagatg
ggcaggtccttggggctccctgaccagattgcctagcctagtcaataaga
tctaagcctttcggtgaaagagcctttctgaaaacttacaaaaccacaca
gatacaaggagagtgtcatgatttggatgagaatcttccccataggggaa
cctttccacacgtggtccccagttgttgatgttgtctgagtaagcttggg
gatgtggacttgttagaggaagcttgtcaccgaaaggagggtttaagaat
taaagcaaagcctaagaacacttgcagctcagtcttcctgctccatcctt
gcagtgagcactgacttcctggaccctgctcctgctactgtgcctgtcat
ttgctgctatgcctctaagccacagtggacaggatcatgggcttctgggt
ccttatgcgtgttgtgtcccaggcctttgcgttgtcatatctcctttagc
ctctcgtgtatggttaaccttcctgggtctttgatctcctgcttctgctg
acacacttgtcctactcatttttctgagaacggtataattttctggacat
cagtttgtgctgtggtattgaccaattgaacaaacctccaggaaggacac
gcgccacattactaaactagcaacgcagaggtcaggtggttttagtccct
ggttgtctactgtggggggcggggatgaatctattaataagtgagagaac
tcattatgtcttttatattgaaagagaagaaggatagaagtggccgacca
tccagagatcctgctagtgatgtggaatttggagagtctttctgtcttgg
tagtagatgcgttcatgcatgttgcagtcactcatctactcacaaatgta
tctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40731642_40732719
seq2: B6Ng01-104B13.b_46_1121 (reverse)

seq1  GTGAAATATCACCCAGCAAAGGAAAGAGGTGAATATGTGGCAGCTTCCAA  50
      ||||||| ||||||||||||||||||| ||| ||||||||||||||||||
seq2  GTGAAATTTCACCCAGCAAAGGAAAGA-GTG-ATATGTGGCAGCTTCCAA  48

seq1  AAGCGAGACAAAGTTTGTTAAAGCTGTGTCGTCTCTTAAAAAAATAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAGACAAAGTTTGTTAAAGCTGTGTCGTCTCTTAAAAAAATAAATA  98

seq1  AAAGGATGTGCAGGTTAGGAGTTGCAGAAGACTCACTGCGGCCCAGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGTGCAGGTTAGGAGTTGCAGAAGACTCACTGCGGCCCAGAGGG  148

seq1  GCAAGTAGGGACAGAAACAAACACAGCTCAACCTCCACCTGTAGGAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAGGGACAGAAACAAACACAGCTCAACCTCCACCTGTAGGAAAGC  198

seq1  AGACTGACTCAGGGCAGGGACCATGAAGATGAAAGCCACCTTCTCTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACTCAGGGCAGGGACCATGAAGATGAAAGCCACCTTCTCTTTGC  248

seq1  TTGCTCAATTCGTACAGCACAAGTGGCAATGACAATCAGAGCACACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAATTCGTACAGCACAAGTGGCAATGACAATCAGAGCACACTGAA  298

seq1  GTGAATCTTAATTTTTTTCCTAACTTTAATCTTATTTTACGTGCATCGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCTTAATTTTTTTCCTAACTTTAATCTTATTTTACGTGCATCGGT  348

seq1  GTTCGGCCTCCTCCTGTGTCTATGCACCACGCGTGTGCCTGATGGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGCCTCCTCCTGTGTCTATGCACCACGCGTGTGCCTGATGGTGACA  398

seq1  GAGGACAGATGAAAGCATTCAGTCCCCTGGAACTGGGGTTACATATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGATGAAAGCATTCAGTCCCCTGGAACTGGGGTTACATATGCTT  448

seq1  GGGAACCATTACATGGGGGCTGCAAATTGAACCAGGTCTTCTGAAAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCATTACATGGGGGCTGCAAATTGAACCAGGTCTTCTGAAAGAGC  498

seq1  GGCCAGGAAGAGCTCATAACCACTGAGTCATCTATCTGCCCCCTGTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAAGAGCTCATAACCACTGAGTCATCTATCTGCCCCCTGTTAAA  548

seq1  TAACACCTTTTCTAACATTGCCTGGTGAAAATTTGATATAGAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCTTTTCTAACATTGCCTGGTGAAAATTTGATATAGAAAAAAAAA  598

seq1  TTGCAAAGGTGCTTTTTGGCGTTTGTTTGTTTGTTTGTTTCTGTTTCGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGGTGCTTTTTGGCGTTTGTTTGTTTGTTTGTTTCTGTTTCGTT  648

seq1  TGCATGGGCCACCTTTCAAGATATCAAGAAAAGACAATTCTTCTCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGGCCACCTTTCAAGATATCAAGAAAAGACAATTCTTCTCTCAAA  698

seq1  ATATTTAGGTGTGCTTTTTTTTTCCCAAAAAGTATGTAGTTTATAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGGTGTGCTTTTTTTTTCCCAAAAAGTATGTAGTTTATAAAATT  748

seq1  CTCTGAGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCT  798

seq1  TCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGAGACTTACAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGAGACTTACAACT  848

seq1  GTCTTTAATGGGATCAGATGCCCTCTTCTGGTGTGTCACAAGACAGTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAATGGGATCAGATGCCCTCTTCTGGTGTGTCACAAGACAGTGAC  898

seq1  AGAGTACCCATAAGTATATTAATTAAATAAATAAATCTTTTAAAAATACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACCCATAAGTATATTAATTAAATAAATAAATCTTTTAAAAATACA  948

seq1  TAATAATAAATAAAATTCTCTGAAATAAAACGCAAAGTTGTCAAGTGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAAATAAAATTCTCTGAAATAAAACGCAAAGTTGTCAAGTGCAG  998

seq1  GGTGGTGTTCTATTGACACATTTCACTGAGTTTGGTTTTATGTGATTTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGTTCTATTGACACATTTCACTGAGTTTGGTTTTATGTGATTTCC  1048

seq1  ATTCAGTTTTGTTCGCTATTGTGAATTC  1078
      ||||||||||||||||||||||||||||
seq2  ATTCAGTTTTGTTCGCTATTGTGAATTC  1076

seq1: chr13_40650375_40651384
seq2: B6Ng01-104B13.g_67_1072

seq1  GAATTCCAGGGGCAGCCTGAGCTATAGAGAAAGACCTTTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGGCAGCCTGAGCTATAGAGAAAGACCTTTTTTTTTTTTTT  50

seq1  TTTTAAGTTTGTAAGTTAACTAAGTTGGTACAATTCTTGCCTTGCAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTTGTAAGTTAACTAAGTTGGTACAATTCTTGCCTTGCAAGTA  100

seq1  TGACAAGCTCAAGTCCATATCCAGAAGCCAGTGCTGGGCAGGAGGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCTCAAGTCCATATCCAGAAGCCAGTGCTGGGCAGGAGGAGATG  150

seq1  GGCAGGTCCTTGGGGCTCCCTGACCAGATTGCCTAGCCTAGTCAATAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTCCTTGGGGCTCCCTGACCAGATTGCCTAGCCTAGTCAATAAGA  200

seq1  TCTAAGCCTTTCGGTGAAAGAGCCTTTCTGAAAACTTACAAAACCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCCTTTCGGTGAAAGAGCCTTTCTGAAAACTTACAAAACCACACA  250

seq1  GATACAAGGAGAGTGTCATGATTTGGATGAGAATCTTCCCCATAGGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAGGAGAGTGTCATGATTTGGATGAGAATCTTCCCCATAGGGGAA  300

seq1  CCTTTCCACACGTGGTCCCCAGTTGTTGATGTTGTCTGAGTAAGCTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCACACGTGGTCCCCAGTTGTTGATGTTGTCTGAGTAAGCTTGGG  350

seq1  GATGTGGACTTGTTAGAGGAAGCTTGTCACCGAAAGGAGGGTTTAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGACTTGTTAGAGGAAGCTTGTCACCGAAAGGAGGGTTTAAGAAT  400

seq1  TAAAGCAAAGCCTAAGAACACTTGCAGCTCAGTCTTCCTGCTCCATCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAAAGCCTAAGAACACTTGCAGCTCAGTCTTCCTGCTCCATCCTT  450

seq1  GCAGTGAGCACTGACTTCCTGGACCCTGCTCCTGCTACTGTGCCTGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGCACTGACTTCCTGGACCCTGCTCCTGCTACTGTGCCTGTCAT  500

seq1  TTGCTGCTATGCCTCTAAGCCACAGTGGACAGGATCATGGGCTTCTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTATGCCTCTAAGCCACAGTGGACAGGATCATGGGCTTCTGGGT  550

seq1  CCTTATGCGTGTTGTGTCCCAGGCCTTTGCGTTGTCATATCTCCTTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGCGTGTTGTGTCCCAGGCCTTTGCGTTGTCATATCTCCTTTAGC  600

seq1  CTCTCGTGTATGGTTAACCTTCCTGGGTCTTTGATCTCCTGCTTCTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTGTATGGTTAACCTTCCTGGGTCTTTGATCTCCTGCTTCTGCTG  650

seq1  ACACACTTGTCCTACTCATTTTTCTGAGAACGGTATAATTTTCTGGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTGTCCTACTCATTTTTCTGAGAACGGTATAATTTTCTGGACAT  700

seq1  CAGTTTGTGCTGTGGTATTGACCAATTGAACAAACCTCCAGGAAGGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTGCTGTGGTATTGACCAATTGAACAAACCTCCAGGAAGGACAC  750

seq1  GCGCCACATTACT-AACTAGCAACGCAGAGGTCAGGTGGTTTTAGT-CCT  798
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  GCGCCACATTACTAAACTAGCAACGCAGAGGTCAGGTGGTTTTAGTCCCT  800

seq1  GGTTGTCTACTGTGGGGGGCGGGGATGAATCTATTAATAAGTGAGAGAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCTACTGTGGGGGGCGGGGATGAATCTATTAATAAGTGAGAGAAC  850

seq1  TCA-TATGTCTTCTATATTGAAAGAGAAGAAGGATAGAAGTGGCCGACCA  897
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCATTATGTCTTTTATATTGAAAGAGAAGAAGGATAGAAGTGGCCGACCA  900

seq1  TCCCAGAGATCCTGCTAGTGATGTGGAATTTGGAGAGGTCTTTCTGTCTG  947
      | |||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  T-CCAGAGATCCTGCTAGTGATGTGGAATTTGGAGA-GTCTTTCTGTCTT  948

seq1  GTTAGTAGATGCGTTCATGCATGTTTGCAGGTCACTCATCTTACTCACAA  997
      | ||||||||||||||||||||| ||||| |||||||||| ||||||| |
seq2  GGTAGTAGATGCGTTCATGCATG-TTGCA-GTCACTCATC-TACTCAC-A  994

seq1  AATGTTATCTCCC  1010
      |||| ||||||||
seq2  AATG-TATCTCCC  1006