BAC Information

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BAC

Clone NameB6Ng01-104E03
Chromosome13 (Build37)
Map Location 13,106,606 - 13,263,352
singlet/doubletdoublet
Overlap geneLOC434483, LOC674723
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2
Downstream genePrl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104E03.bB6Ng01-104E03.g
ACCDH912611DH912612
length1,161943
definitionDH912611|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E03, 5' end.DH912612|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,106,606 - 13,107,559)(13,262,429 - 13,263,352)
sequence
gaattccagggcaggtgaccatcttaatctgttgggtcaacctctataca
aattccagaaccattactgaggtatggggctggaaacagttgctagggaa
gtcaaaactgtgttgacccattgcccttgcctcaggccaagtggctctga
ctagctgccagaagcctgcctggggattttaccagtaactgactcacctg
ggttttcctggacttgtccagttctaggaaacggatttagacctagtctc
cttcactgcccatttgaagcctgtcatggaatcagcctatttcattcctc
tcaaacagggctcacaaaattaactgattgagtttcatgggaactcacag
agatcagggagcctgtgggaacttgacctatagcctctacatctatttta
tggtgtagtattttgatattcttgtggaaattctaacagagggaacacag
gttgcctgtgacacttttgcctacttgtgggactctttccacctactcac
ttgccttgtccaacctggttgtgatggcacgtgcctggtcttattgtaat
ttttcatgccatatttaattgtacctggaagacctgctcttttctgaagg
aaggcaggagtggagggaatctgggtgagagaagaggtaaacagaaaaga
ctgaaaggagatgaggaagggggaaatttcagttgagatgtaatatataa
aagaagaatttaaaaaaatgttttaaaaatcaaggaattgatttttttta
aatttagaattgaattaaaggaaaacacaacaccccaaacctatggggta
caataaatgcagttctcagaagcaagttcatagcactaagtgcctacata
atcaaacaaacaaaactggaagaatcttgtatttgttatttcatgaagaa
cttggttggaattctgatgggtactgcattaatctgtagattgcttccat
caaattggcatttttactacattaatcctgccaaaccatgagcatgggag
atatttccatctttctgggatcatcctcgatttctgtctttaaaagactg
aagttcatacaatctttcactgctggttagaagtcacaacaaggattttt
tatttgttggtgactattgtgtgaaggggttgtttccctaattcttccac
ctgttatcctt
gaattcttatctatgtacctccctagcatacaattatactgagattttgg
ttagaaaatggacttttctttgggaaaaacattctaactatctattttca
ttcttaacaataaagtatagttactcagtaaacatagtgaagagtctcca
gtaaattcttctagtgtagatatggattggtttttgatcctggcacctat
ctttacagttttgttgagtttttgggtatgtgaatgaagcattaatattt
catttgagagggatttcattttaattatctgtgtagcctattttgcattc
atttgctcatattttagattaatttctctttttatacactccaagtttta
ttgcggtaatactcacagtatctaaattacagaacacacctgaatgattt
gaggttaatttctatatcaatatgtagagtatggcaaacatttgcattta
tcttgattaactatttattaagtgtagatagggaataaaatctctgtata
ctccaaaacttgagctatgctttccattcttcctttgctatgttgttcaa
caaagccacaaaattgtgggatctctaaatacatttttatatgtacaaga
aacattgaaactgtgttgcctatgatctataaacattctagttgaatgtc
atgctttgttggttagagttagattcatttttttaattaatagatattgg
aagatagttatgtgtttccctcaaagataagcatcaactcccacattctt
cttgcctgacaagcaatctttgtcagtagataaatgaggactgtagaaga
ggtgccgtggaggcacaaactagtgtgtttcacattaagaatagccttct
tgtttgtgagcttggcatagaacagaaaagcttttgagtgatccacttat
tatagagggagtataacttagatgggattgtgggaaaaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13106606_13107559
seq2: B6Ng01-104E03.b_261_1205

seq1  TCCAGTTCTAGGAAATGGATTTAGACCTAGTCTCCTTCACTGCCCATTTG  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCTAGGAAACGGATTTAGACCTAGTCTCCTTCACTGCCCATTTG  50

seq1  AAGCCTGTCATGGAATCAGCCTATTTCATTCCTCTCAAACAGGGCTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTCATGGAATCAGCCTATTTCATTCCTCTCAAACAGGGCTCACA  100

seq1  AAATTAACTGATTGAGTTTCGTGGGAACTCACAGAGATCAGGGAGCCTGT  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAATTAACTGATTGAGTTTCATGGGAACTCACAGAGATCAGGGAGCCTGT  150

seq1  GGGAACTTGACCTATAGCCTCTACATCTATTTTATGGTGTAGTATTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTTGACCTATAGCCTCTACATCTATTTTATGGTGTAGTATTTTGA  200

seq1  TATTCTTGTGGAAATCCTAACAGAGGGAACACAGGTTGCCTGTGACACTT  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTCTTGTGGAAATTCTAACAGAGGGAACACAGGTTGCCTGTGACACTT  250

seq1  TTGCCTACTTGTGGGACTCTTTCCACCTACTCACTTGCCTTGTCCAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTACTTGTGGGACTCTTTCCACCTACTCACTTGCCTTGTCCAACCT  300

seq1  GGTTGTGATGGCACGTGCCTGGTCTTATTGTAATTTTTCATGCCATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGATGGCACGTGCCTGGTCTTATTGTAATTTTTCATGCCATATTT  350

seq1  AATTGTACCTGGAAGACCTGCTCTTTTCTGAAGGAAGGCAGGAGTGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTACCTGGAAGACCTGCTCTTTTCTGAAGGAAGGCAGGAGTGGAGG  400

seq1  GAATCTGGGTGAGAGAAGAGGTAAACAGAAAAGACTGAAAGGAGATGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGGTGAGAGAAGAGGTAAACAGAAAAGACTGAAAGGAGATGAGG  450

seq1  AAGGGGGAAATTTCAGTTGAGATGTAATATATAAAAGAAGAATTTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAAATTTCAGTTGAGATGTAATATATAAAAGAAGAATTTAAAAA  500

seq1  AATGTTTTAAAAATCAAGGAATTGATTTTTTTTTTAAATTTAGAATTGAA  550
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  AATGTTTTAAAAATCAAGGAATTGA--TTTTTTTTAAATTTAGAATTGAA  548

seq1  TTAAAGGAAAACACAACACCCCAAACCTATGGGGTACAATAAATGCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAAAACACAACACCCCAAACCTATGGGGTACAATAAATGCAGTT  598

seq1  CTCAGAAGCAAGTTCATAGCACTAAGTGCCTACATAATCAAACAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGCAAGTTCATAGCACTAAGTGCCTACATAATCAAACAAACAAA  648

seq1  ACTGGAAGAATCTTGTATTTGTTATTTCATGAAGAACTTGTTTGGAATTC  700
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTGGAAGAATCTTGTATTTGTTATTTCATGAAGAACTTGGTTGGAATTC  698

seq1  TGATGGGTACTGCATTAATCTGTAGATTGCTTCCATCAAAATTGGCATTT  750
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGATGGGTACTGCATTAATCTGTAGATTGCTTCCATC-AAATTGGCATTT  747

seq1  TTACTACATTAATCCTGCCAAACCATGAGCATGGGAGATATTTCCATC-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTACTACATTAATCCTGCCAAACCATGAGCATGGGAGATATTTCCATCTT  797

seq1  TCTGAGATCATCCTCGATTTCTGTCTTT-AGAGACTTGAAGTGTCATACA  848
      |||| ||||||||||||||||||||||| | |||| |||||| |||||| 
seq2  TCTGGGATCATCCTCGATTTCTGTCTTTAAAAGAC-TGAAGT-TCATAC-  844

seq1  AATCTTTCACTTGCTTGTTTAGAGTCACAACAAGGTATTTTATA-TTGTT  897
      |||||||||| |||| |||   ||||||||||||| ||||| || |||||
seq2  AATCTTTCAC-TGCTGGTTAGAAGTCACAACAAGG-ATTTTTTATTTGTT  892

seq1  TGTGACTAT--TGTGAAGGGTGTTGTTTCCCTAATTTCTTTCCCAACCTG  945
       ||||||||  ||||||||| ||||||||||||| |||||   | |||||
seq2  GGTGACTATTGTGTGAAGGG-GTTGTTTCCCTAA-TTCTT---CCACCTG  937

seq1  TTTATCCTT  954
       ||||||||
seq2  -TTATCCTT  945

seq1: chr13_13262429_13263352
seq2: B6Ng01-104E03.g_70_1012 (reverse)

seq1  TCTCTTTCTTCCCACTAGTCCCATCTAAGTTTATACTCCCTCTATTATAA  50
      ||||||| ||||||| | ||||||||||| ||||||||||||||| ||||
seq2  TCTCTTT-TTCCCAC-AATCCCATCTAAG-TTATACTCCCTCTATAATAA  47

seq1  TGTGGATCACTCAAAGCCTTTTCTGTTCCTATGCCAAAGCTCACAAA---  97
       ||||||||||||||  |||||||||| ||||||| |||||||||||   
seq2  -GTGGATCACTCAAAAGCTTTTCTGTT-CTATGCC-AAGCTCACAAACAA  94

seq1  ----GCTATTTCTAATGTGAAACACACTAGTTTGTGCCTCCACGGCACCT  143
          ||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTATTCTTAATGTGAAACACACTAGTTTGTGCCTCCACGGCACCT  144

seq1  CTTCTACAGTCCTCATTTATCTACTGACAAAGATTGTTTGTCAGGCACAA  193
      |||||||||||||||||||||||||||||||||||| ||||||||||  |
seq2  CTTCTACAGTCCTCATTTATCTACTGACAAAGATTGCTTGTCAGGCAAGA  194

seq1  AGCATCTGGGAGATGATGCTTATCTTTGAGGG-AACACATAACTATCTTC  242
      || || |||||| ||||||||||||||||||| |||||||||||||||||
seq2  AGAATGTGGGAGTTGATGCTTATCTTTGAGGGAAACACATAACTATCTTC  244

seq1  CAATATCTATTAATT-AAAAAATGAATCTAACTCTAA-CAACAAAGCATG  290
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  CAATATCTATTAATTAAAAAAATGAATCTAACTCTAACCAACAAAGCATG  294

seq1  ACATTCACCTAGAATGTTTATAGACCATAGGCAACACAGTTTCAATGTTT  340
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  ACATTCAACTAGAATGTTTATAGATCATAGGCAACACAGTTTCAATGTTT  344

seq1  CTTGTACATATAAAAATGTATTTAGAGATCCCACAATTTTGAGGCTTTGT  390
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTGTACATATAAAAATGTATTTAGAGATCCCACAATTTTGTGGCTTTGT  394

seq1  TGCACAACATAGCAAAGGAAGAATGGAAAGCATAGCTCAAGTTTTGGAGT  440
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACATAGCAAAGGAAGAATGGAAAGCATAGCTCAAGTTTTGGAGT  444

seq1  ATACAGAGATTTTATTCCCTATCTACACTTAATAAATAGTTAGTCAAGAT  490
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATACAGAGATTTTATTCCCTATCTACACTTAATAAATAGTTAATCAAGAT  494

seq1  AAATCCAAATCTTTGCCATACTCTACATATTGATATAGAAATTAACCTCA  540
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAATGTTTGCCATACTCTACATATTGATATAGAAATTAACCTCA  544

seq1  AATCTTTCAGGTGTGTTCTGTAACTTAGATACTGTGAGTATTACTGCAAT  590
      |||| |||||||||||||||||| |||||||||||||||||||| |||||
seq2  AATCATTCAGGTGTGTTCTGTAATTTAGATACTGTGAGTATTACCGCAAT  594

seq1  AAAACTTGGAGTGTATAAAAAGAGAAATTAATCTAAAATATGAGCAAATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGGAGTGTATAAAAAGAGAAATTAATCTAAAATATGAGCAAATG  644

seq1  AATGCAAAATAGGCTACACAGATAATTAAAATGAAATCCCTCTCAAACGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATGCAAAATAGGCTACACAGATAATTAAAATGAAATCCCTCTCAAATGA  694

seq1  -----TAA----------ACATACCCAAAAACTCAACAAAACTGTAAAGA  725
           |||          ||||||||||||||||||||||||||||||||
seq2  AATATTAATGCTTCATTCACATACCCAAAAACTCAACAAAACTGTAAAGA  744

seq1  TAGGTGCCAGGATCACAAAACAATCCATATTTACACTGGAAGAATTTACT  775
      ||||||||||||||| ||| |||||||||| |||||| ||||||||||||
seq2  TAGGTGCCAGGATCAAAAACCAATCCATATCTACACTAGAAGAATTTACT  794

seq1  GGAGACTCTTCACTATGTTTACTGAGTAACTATACTTTATTGTTAAGAAT  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTCTTCACTATGTTTACTGAGTAACTATACTTTATTGTTAAGAAT  844

seq1  GAATATAGATAGTTAGAATGTTTTTCCCAAAGAAAAGTCCATTTTCTAAC  875
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGATAGTTAGAATGTTTTTCCCAAAGAAAAGTCCATTTTCTAAC  894

seq1  CAAAATCTCAGTGTAATTGTATGCTAGGGAGGTACATAGATAAGAATTC  924
      |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAAATCTCAGTATAATTGTATGCTAGGGAGGTACATAGATAAGAATTC  943