BAC Information

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BAC

Clone NameB6Ng01-104F07
Chromosome13 (Build37)
Map Location 103,493,592 - 103,644,876
singlet/doubletdoublet
Overlap geneCd180, Mast4
Upstream genePik3r1
Downstream geneEG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104F07.bB6Ng01-104F07.g
ACCDH912662DH912663
length1,1561,109
definitionDH912662|Mus musculus domesticus DNA, BAC clone: B6Ng01-104F07, 5' end.DH912663|Mus musculus domesticus DNA, BAC clone: B6Ng01-104F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,493,592 - 103,494,764)(103,643,762 - 103,644,876)
sequence
gaattcactctgtcagccaggctgaccttgaactcacagatcattgcctg
ctactacctcctgagagctaggattaaaggctagcacccctacatctggc
ttctattagctctttatttacctgttttatacaaattggataaagagttc
cattatctgctctagaggcgaatcatgattccaactagtgaaatatagct
gaaaagttttatgtgaatgctgaagcaatgtttcagaacaaatgggcaga
aatatccaaagcaagtgagggtgtgcaacttgcatatgtggaaagaagag
agaagcctgaggcttccgagacacctctaaccctcgtagcagatttccac
attggtccttacgttcctgcagagcgggagaacacacacacctatgatga
tatttcttgtttgtaagcaccattgtgagatgctaccgccaatatcacta
ctcacttgtgggtagatgagggagccatcagtacgcatgtgtgcaaacaa
aggggtgtgtgttcacgtgcacaagtgtgtaattgattcagtgtttttta
gatataataccagaatggtgatttctttactgttttccagttcaagaagc
atttccccatctatcatctgacacatagtacttcataaactccttttgca
tatacctgatgagaaaagagcaagactatagcccattggtagaatgtatg
cttagcatgtgctaggtcctggattcaatctttaataacactgccctcca
caaaaaaaaaaaaaaatcagtaaaggttgtataggttgtatattgcccac
gatgttagcaatatatattgtctcctatgcagatatatagtttttgatat
agtttatattaaattaagcagtaaatcatagtttggttttttttacaatc
aatcaaatcacttgttttcttccttaccataaaagaaagaaatttaaaat
tccctggagcattcactctaaaagggacaggaatatatattaaattctga
atcagagtgttcagaactagactatcatattcaagaaactacgagtatgg
aagaagttctgttttactttcagtatgtatactatgtgcatgcacccaat
ggagttgttaatctaccactggctgggtgggatcatgtcctggtaaggat
tgctga
gaattcattactctttctgggtattgcactgacccaggagaataaatgac
taatgtgtattaaagaagacaaacaaacgtgaggaaacatgtatctttcc
atcactggggtttgtttttgctctagtctttgatgcttgtgcatgctacc
ttaaaattcatctgataaccccctaccagcagaaaatggaaaaagtaggt
accttgtagctgtctatatgaacccatttaccagatattcaagatacagc
caatagcagattagaagatgccgtcattgttgtcttaaaacactggaatc
tattttcctgttccctaacatgttctttaatgaggaatttaaatgtagca
cacaagatgaaaaatgagcgagcagcaagctgcatttatctcaggcatcg
actgttttattgacaaaaggcacaaatatgaaatttgtctaaataattag
atttttaattagtgcatcattgtaagatgaatgtcattccacttcgttgc
atatgactccctattagaagtttcatgtcgacaaggattctacctgtggt
ttgctaatctgaatccttaatttatcacttgcgtgtatggcatgtcacat
ccttgtagatgcaggcacgaggtgagaggagacgtttgattatagctctg
ctgtggtgaggaatattgatggtgctatgctgtatgaatacattatggct
tctcacattcaggggataggtttcaaccccatgttagtgagcacacacca
gttctctgtgctgtgagcagcagcgtgaggaggtcgtggaggctgtgccc
ccttgtctgtgtcggctttgaacttgctcaaacagtagtggcggtttctt
cacctggtttttctttccttctgacagttgccgaacaagcaaccggaaga
gtttgataggcaatggccagtctccagcactgcctcgaccacactcactc
tctctgctcatgcaggtaactgacgactgtcttgtttcttttgttgtctt
ttaaagcaatctagaccttttgaagacctacatgggtctatttacctgcc
tgattttctaattatgttactactaagtggttcttccgagataataatag
aatcctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103493592_103494764
seq2: B6Ng01-104F07.b_43_1198

seq1  GAATTCACTCTGTCAGCCAGGCTGACCTTGAACTCACAGATCATTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTCAGCCAGGCTGACCTTGAACTCACAGATCATTGCCTG  50

seq1  CTACTACCTCCTGAGAGCTAGGATTAAAGGCTAGCACCCCTACATCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACCTCCTGAGAGCTAGGATTAAAGGCTAGCACCCCTACATCTGGC  100

seq1  TTCTATTAGCTCTTTATTTACCTGTTTTATACAAATTGGATAAAGAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTAGCTCTTTATTTACCTGTTTTATACAAATTGGATAAAGAGTTC  150

seq1  CATTATCTGCTCTAGAGGCGAATCATGATTCCAACTAGTGAAATATAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTGCTCTAGAGGCGAATCATGATTCCAACTAGTGAAATATAGCT  200

seq1  GAAAAGTTTTATGTGAATGCTGAAGCAATGTTTCAGAACAAATGGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTTTATGTGAATGCTGAAGCAATGTTTCAGAACAAATGGGCAGA  250

seq1  AATATCCAAAGCAAGTGAGGGTGTGCAACTTGCATATGTGGAAAGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCAAAGCAAGTGAGGGTGTGCAACTTGCATATGTGGAAAGAAGAG  300

seq1  AGAAGCCTGAGGCTTCCGAGACACCTCTAACCCTCGTAGCAGATTTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTGAGGCTTCCGAGACACCTCTAACCCTCGTAGCAGATTTCCAC  350

seq1  ATTGGTCCTTACGTTCCTGCAGAGCGGGAGAACACACACACCTATGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCCTTACGTTCCTGCAGAGCGGGAGAACACACACACCTATGATGA  400

seq1  TATTTCTTGTTTGTAAGCACCATTGTGAGATGCTACCGCCAATATCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTGTTTGTAAGCACCATTGTGAGATGCTACCGCCAATATCACTA  450

seq1  CTCACTTGTGGGTAGATGAGGGAGCCATCAGTACGCATGTGTGCAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTGTGGGTAGATGAGGGAGCCATCAGTACGCATGTGTGCAAACAA  500

seq1  AGGGGTGTGTGTTCACGTGCACAAGTGTGTAATTGATTCAGTGTTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGTGTGTTCACGTGCACAAGTGTGTAATTGATTCAGTGTTTTTTA  550

seq1  GATATAATACCAGAATGGTGATTTCTTTACTGTTTTCCAGTTCAAGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATACCAGAATGGTGATTTCTTTACTGTTTTCCAGTTCAAGAAGC  600

seq1  ATTTCCCCATCTATCATCTGACACATAGTACTTCATAAACTCCTTTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCATCTATCATCTGACACATAGTACTTCATAAACTCCTTTTGCA  650

seq1  TATACCTGATGAGAAAAGAGCAAGACTATAGCCCATTGGTAGAATGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTGATGAGAAAAGAGCAAGACTATAGCCCATTGGTAGAATGTATG  700

seq1  CTTAGCATGTGCTAGGTCCTGGATTCAATCTTTAATAACACTGCCCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATGTGCTAGGTCCTGGATTCAATCTTTAATAACACTGCCCTCCA  750

seq1  CAAAAAAAAAAAAAAATCAGTAAAGGTTGTATAGGTTGTATATTGCCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAATCAGTAAAGGTTGTATAGGTTGTATATTGCCCAC  800

seq1  GATGTTAGCAATATATATTGTCTCCTATGCAGATATATAGTTTTTGATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGCAATATATATTGTCTCCTATGCAGATATATAGTTTTTGATAT  850

seq1  AGTTTATATTAAATTAAGCAGTAAATCATAGTTTGGTTTTTTTTACAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATATTAAATTAAGCAGTAAATCATAGTTTGGTTTTTTTTACAATC  900

seq1  AATCAAATCACTTGTTTTCTTCCTTACCATAAAAGAAAGAAATTTAAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATCACTTGTTTTCTTCCTTACCATAAAAGAAAGAAATTTAAAAT  950

seq1  TCCCT-GAGCATTCACTCTAAAAGGGACAAGGAATATATATTAAATTCTG  999
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCCTGGAGCATTCACTCTAAAAGGGAC-AGGAATATATATTAAATTCTG  999

seq1  AATCAGAGTGTTCAGAACTAAGACTATTCATTAATCCAAGAAACTACGAG  1049
      ||||||||||||||||||| |||||| ||||  || ||||||||||||||
seq2  AATCAGAGTGTTCAGAACT-AGACTA-TCAT--ATTCAAGAAACTACGAG  1045

seq1  TATGGAAGAAAGTTCTGTTTTACCTTTCAGTAATGTATACTATGTGGTTA  1099
      |||||||| ||||||||||||| |||||||| ||||||||||||||    
seq2  TATGGAAG-AAGTTCTGTTTTA-CTTTCAGT-ATGTATACTATGTG---C  1089

seq1  TTGCACACAATGGAGTTGTTAATCTACCACTGTGCTGGTGTGGGTTCATT  1149
       ||||| ||||||||||||||||||||||||| ||||| ||||| |||  
seq2  ATGCACCCAATGGAGTTGTTAATCTACCACTG-GCTGG-GTGGGATCA--  1135

seq1  TGTCCTTGTATAAGTGATTGCTGA  1173
      |||||| |  |||| |||||||||
seq2  TGTCCTGG--TAAG-GATTGCTGA  1156

seq1: chr13_103643762_103644876
seq2: B6Ng01-104F07.g_67_1175 (reverse)

seq1  AAAAGGATTCTAATTATTTATCTCAGAAAGAACAACTTAGTAGTAACATA  50
      ||||||||||| |||| ||||||| | |||||| ||||||||||||||||
seq2  AAAAGGATTCT-ATTA-TTATCTC-GGAAGAACCACTTAGTAGTAACATA  47

seq1  ATAGGAAAACCAAGGCAGGTATATAAGACACATGTAGGTC-TCAAAAGGT  99
      ||  ||||| | ||||||||| || |||| |||||||||| |||||||||
seq2  ATTAGAAAATC-AGGCAGGTAAAT-AGACCCATGTAGGTCTTCAAAAGGT  95

seq1  CTAGATTGCTTTTAAAAGACAACAAAAGAAACAAGACAGTCGTCAGTTAC  149
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTGC-TTTAAAAGACAACAAAAGAAACAAGACAGTCGTCAGTTAC  144

seq1  CTGCATGAGCAGAGAGAGGTGAGTGTGGTCGAGGCAGTGCTGGAGACTGG  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGCATGAGCAGAGAGA-GTGAGTGTGGTCGAGGCAGTGCTGGAGACTGG  193

seq1  CCATTGCCTATCAAACTCTTCCGGTTGCTTGTTCGGCAACTGTCAGAAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCCTATCAAACTCTTCCGGTTGCTTGTTCGGCAACTGTCAGAAGG  243

seq1  AAAGAAAAACCAGGTGAAGAAACCGCCACTACTGTTTGAGCAAGTTCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAACCAGGTGAAGAAACCGCCACTACTGTTTGAGCAAGTTCAAA  293

seq1  GCCGACACAGACAAGGGGGCACAGCCTCCACGACCTCCTCACGCTGCTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACACAGACAAGGGGGCACAGCCTCCACGACCTCCTCACGCTGCTGC  343

seq1  TCACAGCACAGAGAACTGGTGTGTGCTCACTAACATGGGGTTGAAACCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCACAGAGAACTGGTGTGTGCTCACTAACATGGGGTTGAAACCTA  393

seq1  TCCCCTGAATGTGAGAAGCCATAATGTATTCATACAGCATAGCACCATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGAATGTGAGAAGCCATAATGTATTCATACAGCATAGCACCATCA  443

seq1  ATATTCCTCACCACAGCAGAGCTATAATCAAACGTCTCCTCTCACCTCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTCACCACAGCAGAGCTATAATCAAACGTCTCCTCTCACCTCGT  493

seq1  GCCTGCATCTACAAGGATGTGACATGCCATACACGCAAGTGATAAATTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATCTACAAGGATGTGACATGCCATACACGCAAGTGATAAATTAA  543

seq1  GGATTCAGATTAGCAAACCACAGGTAGAATCCTTGTCGACATGAAACTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGATTAGCAAACCACAGGTAGAATCCTTGTCGACATGAAACTTC  593

seq1  TAATAGGGAGTCATATGCAACGAAGTGGAATGACATTCATCTTACAATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGGAGTCATATGCAACGAAGTGGAATGACATTCATCTTACAATGA  643

seq1  TGCACTAATTAAAAATCTAATTATTTAGACAAATTTCATATTTGTGCCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTAATTAAAAATCTAATTATTTAGACAAATTTCATATTTGTGCCTT  693

seq1  TTGTCAATAAAACAGTCGATGCCTGAGATAAATGCAGCTTGCTGCTCGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATAAAACAGTCGATGCCTGAGATAAATGCAGCTTGCTGCTCGCT  743

seq1  CATTTTTCATCTTGTGTGCTACATTTAAATTCCTCATTAAAGAACATGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCATCTTGTGTGCTACATTTAAATTCCTCATTAAAGAACATGTT  793

seq1  AGGGAACAGGAAAATAGATTCCAGTGTTTTAAGACAACAATGACGGCATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAGGAAAATAGATTCCAGTGTTTTAAGACAACAATGACGGCATC  843

seq1  TTCTAATCTGCTATTGGCTGTATCTTGAATATCTGGTAAATGGGTTCATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCTGCTATTGGCTGTATCTTGAATATCTGGTAAATGGGTTCATA  893

seq1  TAGACAGCTACAAGGTACCTACTTTTTCCATTTTCTGCTGGTAGGGGGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCTACAAGGTACCTACTTTTTCCATTTTCTGCTGGTAGGGGGTT  943

seq1  ATCAGATGAATTTTAAGGTAGCATGCACAAGCATCAAAGACTAGAGCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGAATTTTAAGGTAGCATGCACAAGCATCAAAGACTAGAGCAAA  993

seq1  AACAAACCCCAGTGATGGAAAGATACATGTTTCCTCACGTTTGTTTGTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCCCAGTGATGGAAAGATACATGTTTCCTCACGTTTGTTTGTCT  1043

seq1  TCTTTAATACACATTAGTCATTTATTCTCCTGGGTCAGTGCAATACCCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATACACATTAGTCATTTATTCTCCTGGGTCAGTGCAATACCCAG  1093

seq1  AAAGAGTAATGAATTC  1115
      ||||||||||||||||
seq2  AAAGAGTAATGAATTC  1109