BAC Information

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BAC

Clone NameB6Ng01-105A09
Chromosome13 (Build37)
Map Location 54,757,671 - 54,758,404
singlet/doubletsinglet
Overlap geneUbxd8, Rn4.5s-ps3
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb
Downstream geneRnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105A09.bB6Ng01-105A09.g
ACCDH913156DH913157
length1,270734
definitionDH913156|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A09, 5' end.DH913157|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctttgtgaccaggatgtagtaccaaatgggtctgcctttttgca
tggagaaaatagctcagttgcctgtactccccatccctaaacctcttacc
cctccccccacagaggcatgtattgaactgtgaggaccaccagaatggtc
ataacatttagctaatgcatggtttactgatggttcatcaaccactgtta
gaaccaaaattaatggaaagtgacagcttatagactaggggatgaaatgg
ccaatactgaggaaggaccacaaaatcagcgcaacactattgcctataag
acaaacaactaggaaaggaaaagaaaaatctctatcttctccaattcatg
gtgcatgtgtaatggtctagctatatggccatccaaatgaaagaccagta
actgtcaggtaaatggcaaagatacctggtcataggcatgaatggaaatg
gagaaacatagaaaaacttagcaaagacatcaaatattatataactcatg
caggtaatacaaacataaacatcagaaaataatgaaatagtgaacaaatt
ggcatcatgtttgtctagttctagaatgttaaaatttgccagggaacaaa
ttcagaataaattagcatggatgatagattacacatttgaaaaccttgaa
agtttacctctagcactaaaaaataaggggaaatggggcaccaaattaaa
ccagggacaactctatgagaataactattgtgagcaatccatagccagac
agtggctgggttttaatcctttaatcccaacacttgagaggcagaagcaa
gcacacaaaaattacagtgattaaactcaaaagaatttcctactgttgcc
aaaaatacattttgccctaggaaagatataacctgcacaaaaaaaaaaaa
aaaaaaaaaaaaaaagaaaagaaaattcccacccccagagttaacattgg
gggcaggtttttcttttatctttcaggaaaataaaaacatccaaataggg
aatctaagagaccactgggacagtggaacattttaggaaagaacctgatc
atcaagaaacagtagatagatgccagtgcacgtccactccagctcatctc
tgctgccttcgcaaacaggaggcaatgctcttttcggtgtccaatcaatt
aaattaaagctgactagcagggggcgccacctaatccaacccctgaagta
gacaggccatttcgaagtttaggccgcctcggtctccagaggtaggatca
tggtctgcacgagcgactaa
gaattccatccccaacactggaaattagaacccaaaaagcagctggttgt
ggtggcgcatgctggtaggatttgctgaaggaggcaaaggcgcaggagga
tcacgagtttgaggacagcctgggctacacattttgccaggcagtggtgg
cccatgcctttaattccagcacttgggaggcagaggcaggcgatttctga
gtttgaggccagcctggtctatagagtgagttccagaacagccaggactg
cacagagaaaccctgtctcaaaaagacaaaaaaaaatacccaaacacaaa
acaaaaacaaaaccccaaaacccaacccaaagagcaggtgtgagccttgt
tctcagtgtcatcggcttcgttcccagccacgcctcctcttcactctgtg
ctaggtcttttcatcttaccttgtgtgcttcctgcacatggtgtagttca
gaacacggttagaggggtgggaaggaggcctctgtccagcctgaaggttc
catcccagggacccacacagaggaagggaagcaacggcctcccgtggttt
gtcctcccctctgcatgcacacatctacagcccaaatcacagcatcatgt
ggcttaagtgatccttactgttagagactgtgagaagtggaatcgtctct
ctactctggattcatttgggtaacttgaaaatgatcttgacactttcggg
atcatcaggggagggctcaggggtcaggattcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54757671_54758404
seq2: B6Ng01-105A09.g_69_802 (reverse)

seq1  TGGAATGCCTGCCCCCTGAGCCCTCCCCTGATGATCCTGAAAGTGTCAAG  50
      |||||| |||| ||||||||||||||||||||||||| ||||||||||||
seq2  TGGAAT-CCTGACCCCTGAGCCCTCCCCTGATGATCCCGAAAGTGTCAAG  49

seq1  ATCATTTTCAAGTTACCC-AATGATTCCAGAGTAGAGAGACGATTCCACT  99
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  ATCATTTTCAAGTTACCCAAATGAATCCAGAGTAGAGAGACGATTCCACT  99

seq1  TCTCACAGTCTCTAACAGTAAGGATCACTTAAGCCACATGATGCTGTGAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGTCTCTAACAGTAAGGATCACTTAAGCCACATGATGCTGTGAT  149

seq1  TTGGGCTGTAGATGTGTGCATGCAGAGGGGAGGACAAACCACGGGAGGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGTAGATGTGTGCATGCAGAGGGGAGGACAAACCACGGGAGGCC  199

seq1  GTTGCTTCCCTTCCTCTGTGTGGGTCCCTGGGATGGAACCTTCAGGCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCCCTTCCTCTGTGTGGGTCCCTGGGATGGAACCTTCAGGCTGG  249

seq1  ACAGAGGCCTCCTTCCCACCCCTCTAACCGTGTTCTGAACTACACCATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCCTCCTTCCCACCCCTCTAACCGTGTTCTGAACTACACCATGT  299

seq1  GCAGGAAGCACACAAGGTAAGATGAAAAGACCTAGCACAGAGTGAAGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGCACACAAGGTAAGATGAAAAGACCTAGCACAGAGTGAAGAGG  349

seq1  AGGCGTGGCTGGGAACGAAGCCGATGACACTGAGAACAAGGCTCACACCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGGCTGGGAACGAAGCCGATGACACTGAGAACAAGGCTCACACCT  399

seq1  GCTCTTTGGGTTGGGTTTTGGGGTTTTGTTTTTGTTTTGTGTTTGGGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGGGTTGGGTTTTGGGGTTTTGTTTTTGTTTTGTGTTTGGGTAT  449

seq1  TTTTTTTTGTCTTTTTGAGACAGGGTTTCTCTGTGCAGTCCTGGCTGTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTCTTTTTGAGACAGGGTTTCTCTGTGCAGTCCTGGCTGTTC  499

seq1  TGGAACTCACTCTATAGACCAGGCTGGCCTCAAACTCAGAAATCGCCTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTCTATAGACCAGGCTGGCCTCAAACTCAGAAATCGCCTGC  549

seq1  CTCTGCCTCCCAAGTGCTGGAATTAAAGGCATGGGCCACCACTGCCTGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAAGTGCTGGAATTAAAGGCATGGGCCACCACTGCCTGGC  599

seq1  AAAATGTGTAGCCCAGGCTGTCCTCAAACTCGTGATCCTCCTGCGCCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGTAGCCCAGGCTGTCCTCAAACTCGTGATCCTCCTGCGCCTTT  649

seq1  GCCTCCTTCAGCAAATCCTACCAGCATGCGCCACCACAACCAGCTGCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTCAGCAAATCCTACCAGCATGCGCCACCACAACCAGCTGCTTT  699

seq1  TTGGGTTCTAATTTCCAGTGTTGGGGATGGAATTC  734
      |||||||||||||||||||||||||||||||||||
seq2  TTGGGTTCTAATTTCCAGTGTTGGGGATGGAATTC  734