BAC Information

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BAC

Clone NameB6Ng01-105D05
Chromosome13 (Build37)
Map Location 112,354,234 - 112,494,811
singlet/doubletdoublet
Overlap geneLOC100040666, Mier3
Upstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
Downstream geneMap3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105D05.bB6Ng01-105D05.g
ACCDH913286DH913287
length1,215939
definitionDH913286|Mus musculus domesticus DNA, BAC clone: B6Ng01-105D05, 5' end.DH913287|Mus musculus domesticus DNA, BAC clone: B6Ng01-105D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,493,581 - 112,494,811)(112,354,234 - 112,355,520)
sequence
gaattctctccaaactccactcctctgatgggttaaaatgtccaaattaa
gtgactggtgatactgcttaaaaagcagcaggtacggatttgtatgaaag
tcactgtcgcacagcaggtacccaaggctgaatgacactgaggaaagcac
acaggaagcggtcccaagatgtggactctctcgtcctgcctaaagcctaa
ctggcaaagccgctcagaaccccacccagagaggcatggcctcaggattc
tcctcagcaaggagtgtgcctccctacaagcagtctgtgagagacgtgtc
atcatggccttgcctgctgtgaccactgtcacccagaagcacaactctgc
ctaagccagtttgatgtgcaggctctgggagattcgttaacagaggtctt
cagaccaactgcagttaaagggaaatcccctagctacaatgtctaaacag
aaatactgagcaagagttgaacagctgggctggtgagatggctcagtggt
taagagcattgactgctctaccgaaggtcctgagttcaaatcccagcaac
cacatggtggctcacaaccatccgtaaaaagatatgactccctcttctgg
ggtatctgaagacagctacagtgtacttacatataataaataaataaatc
tttttttaaaaaagagttgaacagctactattactcttaaagcaacagga
tcaaatccaaatggatgtttagatgagtaagaggaagtttatatatttat
ttcagaattagaacatgctttaagcattaagaaccttagaaaccaggcaa
tgacagtgaccctgaaactttccgtaagggcccatactcactttgtctag
agtcatgtctggtagttcgtctgcaagttcacttggggagctgtttgcac
tggaattcgcaaccgctggaattgtagatttatagccgtagaacgctaca
ggtctttttagcggcatgttcccttcctgggcgagcaggtagacatggac
taagtggtgccgtaatctgatcgtgggttcagactgcaatgctcaagttt
attcagcaagtatcaacagcagtcaaacagccaagctttaaaaagtgcat
tcttttgtatactgcgtgtgaaatatgacttagccaaggagtaccgtcga
ttagccaaagacaggcgttccactaggtcaatcaagtgacacagacaact
tcaccatcttttagc
gaattctttatgcccgctctccccagctgcttgcgatcatcagttttcaa
ttctacatggcttcctagaatggcctcttctgagatatggcccattttct
gcatcatgaggttcagaggggatcaagtacaatgctgatttaaaagtctg
cccagggctgatgaaatggctccgtgtttaaccgcttatcaccaagcgtg
atgacctgagttcaaaccccaggactcacatgatggaagaagagaaccaa
ctcccctaggctgttctctgatctgtgcgtgtgagctgggctatgcatgc
acatcacactcacacacacacacacacacacacacacacacacacacaca
cacacacgtatgcacgcaccacaaaaaacatgttaaaaaaattgttctgc
tctgcatcttataaaaatcatagaaactatgccttttctctattatcctg
ccctctcccccaaataatgagtgtactactcgattcagatctcagctgct
ccactctgtgaatatgttgtacacagttttctcctctaattgctacgtgg
ccttcggtctgccagatgtaccttcattttggaagtcaagcagaagtatt
tttgactcagggtacagggcctcaaaagtcacgtgacctgccttcctgag
gccagtggatgagaaatgtgaaccatccgtatagtgtaggaatgccttgt
gttaccactgcagcagctcaaagttcagtagtagagtggagtgagtagtt
caggtagtatacaacctttttgttctgaaaggtggggagatgcacatacg
cacatgatgtgaccaatgtttcccgatccgtcaacggaactgccagcata
aacaagggaagtcctaatcactccaggcagctgtcccattcgaaagggat
catgaaggaggagaattatgtgaaggacactctttggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_112493581_112494811
seq2: B6Ng01-105D05.b_44_1258 (reverse)

seq1  GCTAAAAATGAT-GTGAAGTTGTCTGTTGGTCACTTGATTGGCCTAGTGG  49
      |||||||  ||| ||||||||||||||  |||||||||||| ||||||||
seq2  GCTAAAA--GATGGTGAAGTTGTCTGT--GTCACTTGATTGACCTAGTGG  46

seq1  AACTGCTTGCTTTTGCTAATACAGCAGTTACTCACTGGGCTTAGTACTAT  99
      |||  ||  |||| ||||||   |  | ||||| || |||| |||  |||
seq2  AACGCCTGTCTTTGGCTAAT--CGACGGTACTC-CTTGGCTAAGTCATAT  93

seq1  TTTCTACAGCAGTATACAAAAAGGAATGCACTTTTTTAAAGCTTGGCTGT  149
      ||   || |||||||||||||  |||||||| ||||||||||||||||||
seq2  TTCACAC-GCAGTATACAAAA--GAATGCAC-TTTTTAAAGCTTGGCTGT  139

seq1  GTTGACTGCCCTGTTGATACTTTGCTGTATAAACTTGAGCATTGCAGTTC  199
       |||||||  |||||||||| |||||| ||||||||||||||||||| ||
seq2  -TTGACTG--CTGTTGATAC-TTGCTGAATAAACTTGAGCATTGCAG-TC  184

seq1  TGAACCCACGGTTCAGATTACGGCACCACTTAGTCCATGTCTACCCTGCT  249
      ||||||||| | ||||||||||||||||||||||||||||||| ||||||
seq2  TGAACCCAC-GATCAGATTACGGCACCACTTAGTCCATGTCTA-CCTGCT  232

seq1  CGCCCAGGAAGGGAACATGCCGCT-AGAAGACCTGTTGGCGTTCTACGGC  298
      |||||||||||||||||||||||| | |||||||| | ||||||||||||
seq2  CGCCCAGGAAGGGAACATGCCGCTAAAAAGACCTG-TAGCGTTCTACGGC  281

seq1  TATGAATCTACAATTCCAGCGGTTGCGAATTCCAGTGCAAACAGCTCCCC  348
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATCTACAATTCCAGCGGTTGCGAATTCCAGTGCAAACAGCTCCCC  331

seq1  AAGTGAACTTGCAGACGAACTACCAGACATGACTCTAGACAAAGTGAGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACTTGCAGACGAACTACCAGACATGACTCTAGACAAAGTGAGTA  381

seq1  TGGGCCCTTACGG-AAGTTTCAGGGTCACTGTCATTGCCTGGTTTCTAAG  447
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCTTACGGAAAGTTTCAGGGTCACTGTCATTGCCTGGTTTCTAAG  431

seq1  GTTCTTAATGCTTAAAGCATGTTCTAATTCTGAAATAAATATATAAACTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAATGCTTAAAGCATGTTCTAATTCTGAAATAAATATATAAACTT  481

seq1  CCTCTTACTCATCTAAACATCCATTTGGATTTGATCCTGTTGCTTTAAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTACTCATCTAAACATCCATTTGGATTTGATCCTGTTGCTTTAAGA  531

seq1  GTAATAGTAGCTGTTCAACTCTTTTTTAAAAAAAGATTTATTTATTTATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGTAGCTGTTCAACTCTTTTTTAAAAAAAGATTTATTTATTTATT  581

seq1  ATATGTAAGTACACTGTAGCTGTCTTCAGATACCCCAGAAGAGGGAGTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGTACACTGTAGCTGTCTTCAGATACCCCAGAAGAGGGAGTCA  631

seq1  TATCTTTTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAA  681

seq1  CTCAGGACCTTCGGTAGAGCAGTCAATGCTCTTAACCACTGAGCCATCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACCTTCGGTAGAGCAGTCAATGCTCTTAACCACTGAGCCATCTC  731

seq1  ACCAGCCCAGCTGTTCAACTCTTGCTCAGTATTTCTGTTTAGACATTGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCCAGCTGTTCAACTCTTGCTCAGTATTTCTGTTTAGACATTGTA  781

seq1  GCTAGGGGATTTCCCTTTAACTGCAGTTGGTCTGAAGACCTCTGTTAACG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGGATTTCCCTTTAACTGCAGTTGGTCTGAAGACCTCTGTTAACG  831

seq1  AATCTCCCAGAGCCTGCACATCAAACTGGCTTAGGCAGAGTTGTGCTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCCAGAGCCTGCACATCAAACTGGCTTAGGCAGAGTTGTGCTTCT  881

seq1  GGGTGACAGTGGTCACAGCAGGCAAGGCCATGATGACACGTCTCTCACAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACAGTGGTCACAGCAGGCAAGGCCATGATGACACGTCTCTCACAG  931

seq1  ACTGCTTGTAGGGAGGCACACTCCTTGCTGAGGAGAATCCTGAGGCCATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTGTAGGGAGGCACACTCCTTGCTGAGGAGAATCCTGAGGCCATG  981

seq1  CCTCTCTGGGTGGGGTTCTGAGCGGCTTTGCCAGTTAGGCTTTAGGCAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGGGTGGGGTTCTGAGCGGCTTTGCCAGTTAGGCTTTAGGCAGG  1031

seq1  ACGAGAGAGTCCACATCTTGGGACCGCTTCCTGTGTGCTTTCCTCAGTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGAGTCCACATCTTGGGACCGCTTCCTGTGTGCTTTCCTCAGTGT  1081

seq1  CATTCAGCCTTGGGTACCTGCTGTGCGACAGTGACTTTCATACAAATCCG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGCCTTGGGTACCTGCTGTGCGACAGTGACTTTCATACAAATCCG  1131

seq1  TACCTGCTGCTTTTTAAGCAGTATCACCAGTCACTTAATTTGGACATTTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCTGCTTTTTAAGCAGTATCACCAGTCACTTAATTTGGACATTTT  1181

seq1  AACCCATCAGAGGAGTGGAGTTTGGAGAGAATTC  1231
      ||||||||||||||||||||||||||||||||||
seq2  AACCCATCAGAGGAGTGGAGTTTGGAGAGAATTC  1215

seq1: chr13_112354234_112355520
seq2: B6Ng01-105D05.g_70_1008

seq1  GAATTCTTTATGCCCGCTCTCCCCAGCTGCTTGCGATCATCAGTTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGCCCGCTCTCCCCAGCTGCTTGCGATCATCAGTTTTCAA  50

seq1  TTCTACATGGCTTCCTAGAATGGCCTCTTCTGAGATATGGCCCATTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATGGCTTCCTAGAATGGCCTCTTCTGAGATATGGCCCATTTTCT  100

seq1  GCATCATGAGGTTCAGAGGGGATCAAGTACAATGCTGATTTAAAAGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATGAGGTTCAGAGGGGATCAAGTACAATGCTGATTTAAAAGTCTG  150

seq1  CCCAGGGCTGATGAAATGGCTCCGTGTTTAACCGCTTATCACCAAGCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCTGATGAAATGGCTCCGTGTTTAACCGCTTATCACCAAGCGTG  200

seq1  ATGACCTGAGTTCAAACCCCAGGACTCACATGATGGAAGAAGAGAACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGAGTTCAAACCCCAGGACTCACATGATGGAAGAAGAGAACCAA  250

seq1  CTCCCCTAGGCTGTTCTCTGATCTGTGCGTGTGAGCTGGGCTATGCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTAGGCTGTTCTCTGATCTGTGCGTGTGAGCTGGGCTATGCATGC  300

seq1  ACATCACACTCACACACACACACACACACACACACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACACTCACACACACACACACACACACACACACACACACACACACA  350

seq1  CACACACGTATGCACGCACCACAAAAAACATGTTAAAAAAATTGTTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGTATGCACGCACCACAAAAAACATGTTAAAAAAATTGTTCTGC  400

seq1  TCTGCATCTTATAAAAATCATAGAAACTATGCCTTTTCTCTATTATCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCTTATAAAAATCATAGAAACTATGCCTTTTCTCTATTATCCTG  450

seq1  CCCTCTCCCCCAAATAATGAGTGTACTACTCGATTCAGATCTCAGCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCCCCAAATAATGAGTGTACTACTCGATTCAGATCTCAGCTGCT  500

seq1  CCACTCTGTGAATATGTTGTACACAGTTTTCTCCTCTAATTGCTACGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGTGAATATGTTGTACACAGTTTTCTCCTCTAATTGCTACGTGG  550

seq1  CCTTCGGTCTGCCAGATGTACCTTCATTTTGGAAGTCAAGCAGAAGTA-T  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTTCGGTCTGCCAGATGTACCTTCATTTTGGAAGTCAAGCAGAAGTATT  600

seq1  TTTGACTCAGGGTACAGGGCCTCAAAAGTCACGTGACCTGCCTTCCTGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCAGGGTACAGGGCCTCAAAAGTCACGTGACCTGCCTTCCTGAG  650

seq1  GCCAGTGGATGAGAAATGTGAACCATCCGTATAGTGTAGGAATGCCTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGGATGAGAAATGTGAACCATCCGTATAGTGTAGGAATGCCTTGT  700

seq1  GTTACCACTGCAGCAGCTCAAAGTTCAGTAGTAGAGTGGAGTGAGTAGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCACTGCAGCAGCTCAAAGTTCAGTAGTAGAGTGGAGTGAGTAGTT  750

seq1  CAGGCAGTATACAACCATTCTTGTTCTG-AAGGTGGGGAGATGCACATAC  798
      |||| ||||||||||| || |||||||| |||||||||||||||||||||
seq2  CAGGTAGTATACAACC-TTTTTGTTCTGAAAGGTGGGGAGATGCACATAC  799

seq1  GCACATGATGTGACCAATGTTGCCAGATCCGTCAACGGAACTGCCAGCAG  848
      ||||||||||||||||||||| || |||||||||||||||||||||||| 
seq2  GCACATGATGTGACCAATGTTTCCCGATCCGTCAACGGAACTGCCAGCAT  849

seq1  AAACAAAGGGAAGTCCCTATCACTCCAGGCAGCTGTCCCATTCGTATAGG  898
      |||| |||||||||||  |||||||||||||||||||||||||| |  ||
seq2  AAAC-AAGGGAAGTCCTAATCACTCCAGGCAGCTGTCCCATTCGAAAGGG  898

seq1  ATCATGAAGGAGGAG-ACTATGTGAAGGACACTC-TTGGAGGCCTCTAAG  946
      ||||||||||||||| | |||||||||||||||| ||||||         
seq2  ATCATGAAGGAGGAGAATTATGTGAAGGACACTCTTTGGAG---------  939

seq1  TTAGGTGACATACCTGAAGTATGTGTACGTGTACATGTACGTGTGTGTGT  996
                                                        
seq2  --------------------------------------------------  939

seq1  GTGTGTGTGTGTGTGTGCATGTCTGTGCATGCACAAACTCTGCACACGAA  1046
                                                        
seq2  --------------------------------------------------  939

seq1  GTAAGAGTGAAGCCAGTAAGCATGAACAGTCTACCCTCACAGAATCGGGG  1096
                                                        
seq2  --------------------------------------------------  939

seq1  TTACAGGTGTGCAGCTACACTTAGCTTTTTACACAGAGCCTGGGGATTTG  1146
                                                        
seq2  --------------------------------------------------  939

seq1  AACTCAGGTCTCCATGCTTGTGCTTCAAGTCCTCTTACTCACTGTGGTGG  1196
                                                        
seq2  --------------------------------------------------  939

seq1  TTTGATAGAAGCTGGCTCCCATGTTTTTTAATGGAACTATTTAGGAAGGA  1246
                                                        
seq2  --------------------------------------------------  939

seq1  TTAGGAGGTGTGGCCTCGGAAGAGGCGTGGCCTTGTTGGAG  1287
                                               
seq2  -----------------------------------------  939