BAC Information

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BAC

Clone NameB6Ng01-105L14
Chromosome13 (Build37)
Map Location 76,381,038 - 76,530,720
singlet/doubletdoublet
Overlap geneGm276, Mctp1
Upstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128
Downstream geneLOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105L14.bB6Ng01-105L14.g
ACCDH913665DH913666
length1,1731,139
definitionDH913665|Mus musculus domesticus DNA, BAC clone: B6Ng01-105L14, 5' end.DH913666|Mus musculus domesticus DNA, BAC clone: B6Ng01-105L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,381,038 - 76,382,241)(76,529,564 - 76,530,720)
sequence
gaattcaggtctacgggcttagtctacaaacacttgcacctactggacca
tctctcaggcccttagctactttgaatccgtttgttctttgccttatata
caaaatagaatttataagaaaaaaataagcatttaaatgttatcagtata
ccaccaaactgaaccaaatcatatttcattcaaaaggaagtgtttgttgc
ttaagtttttcaaaaacatattaagtaaggctggccaaaggttcattcat
gtttatcgttttatgtttttgtataacccacccagatctaaacattcttt
tgcatgtatcagatattatctaataacatagaatgatatataatattgta
tttatttactaagtctctggattatcagttaatttttctctgatgacttc
ctaaccatgaacattatttcctaaacagtattgaatttttaggggaataa
atcaacatttcagaaccatagaatctttcctagtaccactaagttatttg
tgttggaggacctcccctatctctgtccctacagcgtccctgttgaatgc
cttgctcattgcataagatcctactggtttctcagatgggacacttttgg
gaccaatgcaccttctacttatttgtcctacctgcctctcatttcataat
cttttactttgcagatcaaaattttgggtgtattctaaaaactttgacat
gtattcctctgtcctaattaatgttgattcatgtagtaatcctatagatt
ctattttcctatgtctgtcctctgcactgaacagccatgactaatgacgt
agttcaggcctacctacctctaccctgggctgctgccatagaatgcatct
aatttcgatgcccttgttctatatgtaccaccaattcagatattattaga
atgccattaccttatctaaaatccttttatagctatttacagtctttcac
atgaagttcacacactttactttgggctacagttcctcattttcattttt
attgttcttgacatatctccatctttacttgatagatatgccacaatatc
atactggaacactgtccccagtcagcttgggacatgccagcagactccct
ttactctcctccacacttctctgggtgaaggttcttccactctcttggac
atactgcaatctacggactgttc
gaattctgactttcgttctaatacttaattctcttgactggtacactcca
aggaactccttcctagtaagcttcaagcacaatgtgttcaaacctactct
gatccagacaatttgtaccaagcactgatgtaggatcagctctctttgcc
agaagttgaaactcatgggtaaatttagacccgatatataattgatttgg
cttgtgatagttttgaaaatatatgaacagccaaaaactcaggaatctta
acacttagcacaaaatcttgaatttctcattcatactaagtaatgtgaaa
actgtcatttctaccttgaataacaagtataggtaaagtaggaacaaaca
tgaactccctggtttaccatagagtgaccatgttctttgcactctatcta
cccttgcttccatagccttgtggacataagagtttggagttttgagatcc
ctgctgtaaatcaatactgaccaatggaaatacaaatttaaaaagacaag
tgaaattgactttaatattttatttaacttaacccaaatgttggaacata
agatcaataaaaaagcttaatgctgatatatttcacattcctttctttgc
attaagcttttaggattcggtgtgcacacggttgtatacttacagcacaa
tctgaatgactacatttccagagttcaacaggcaaatgtgatgaaaggaa
agatccttaaccattaaatgctgcagactttctggagggaggctttgcta
tcctgcagttaggttcacaaacatccaggggtcacaaacatccaggggtc
actgtgggcatcaatgagctctgcattacctctacgtgactcagcaagca
ttcaatcattttaaaggtgtcagaataggccagtgaggtcaggactgatg
gtcaattggaattttactgtgagtgtggtgaaaaagatgtagatttctaa
gagagacagttttctaatgtgagtatggtatggatacagaggagactgtt
agtaacagacaggaggctcatagagggctcagaggaatacagagtaagca
gtctgagcggagctcactatttcgagcatagctgaaggctggatcagcga
attagatacaaactgagggaacggtgccagaggccagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76381038_76382241
seq2: B6Ng01-105L14.b_46_1218

seq1  GAATTCAGGTCTACGGGCTTAGTCTACAAACACTTGCACCTACTGGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCTACGGGCTTAGTCTACAAACACTTGCACCTACTGGACCA  50

seq1  TCTCTCAGGCCCTTAGCTACTTTGAATCCGTTTGTTCTTTGCCTTATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGGCCCTTAGCTACTTTGAATCCGTTTGTTCTTTGCCTTATATA  100

seq1  CAAAATAGAATTTATAAGAAAAAAATAAGCATTTAAATGTTATCAGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGAATTTATAAGAAAAAAATAAGCATTTAAATGTTATCAGTATA  150

seq1  CCACCAAACTGAACCAAATCATATTTCATTCAAAAGGAAGTGTTTGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAACTGAACCAAATCATATTTCATTCAAAAGGAAGTGTTTGTTGC  200

seq1  TTAAGTTTTTCAAAAACATATTAAGTAAGGCTGGCCAAAGGTTCATTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTTTCAAAAACATATTAAGTAAGGCTGGCCAAAGGTTCATTCAT  250

seq1  GTTTATCGTTTTATGTTTTTGTATAACCCACCCAGATCTAAACATTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCGTTTTATGTTTTTGTATAACCCACCCAGATCTAAACATTCTTT  300

seq1  TGCATGTATCAGATATTATCTAATAACATAGAATGATATATAATATTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATCAGATATTATCTAATAACATAGAATGATATATAATATTGTA  350

seq1  TTTATTTACTAAGTCTCTGGATTATCAGTTAATTTTTCTCTGATGACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTACTAAGTCTCTGGATTATCAGTTAATTTTTCTCTGATGACTTC  400

seq1  CTAACCATGAACATTATTTCCTAAACAGTATTGAATTTTTAGGGGAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCATGAACATTATTTCCTAAACAGTATTGAATTTTTAGGGGAATAA  450

seq1  ATCAACATTTCAGAACCATAGAATCTTTCCTAGTACCACTAAGTTATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACATTTCAGAACCATAGAATCTTTCCTAGTACCACTAAGTTATTTG  500

seq1  TGTTGGAGGACCTCCCCTATCTCTGTCCCTACAGCGTCCCTGTTGAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGGACCTCCCCTATCTCTGTCCCTACAGCGTCCCTGTTGAATGC  550

seq1  CTTGCTCATTGCATAAGATCCTACTGGTTTCTCAGATGGGACACTTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCATTGCATAAGATCCTACTGGTTTCTCAGATGGGACACTTTTGG  600

seq1  GACCAATGCACCTTCTACTTATTTGTCCTACCTGCCTCTCATTTCATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGCACCTTCTACTTATTTGTCCTACCTGCCTCTCATTTCATAAT  650

seq1  CTTTTACTTTGCAGATCAAAATTTTGGGTGTATTCTAAAAACTTTGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTTTGCAGATCAAAATTTTGGGTGTATTCTAAAAACTTTGACAT  700

seq1  GTATTCCTCTGTCCTAATTAATGTTGATTCATGTAGTAATCCTATAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCTCTGTCCTAATTAATGTTGATTCATGTAGTAATCCTATAGATT  750

seq1  CTATTTTCCTATGTCTGTCCTCTGCACTGAACAGCCATGACTAATGACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCCTATGTCTGTCCTCTGCACTGAACAGCCATGACTAATGACGT  800

seq1  AGTTCAGGGCCTACCTACCTCTACCCTGGGCTGCTGCCATAGAATGCATC  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCA-GGCCTACCTACCTCTACCCTGGGCTGCTGCCATAGAATGCATC  849

seq1  TAATTTCGATGCCCTTGTTCTATATGTACCACCAATTCAGATATTATTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCGATGCCCTTGTTCTATATGTACCACCAATTCAGATATTATTAG  899

seq1  AATGCCATTACCTTATCTAAAATCCTTTTATAGCTATTTACAGTCTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATTACCTTATCTAAAATCCTTTTATAGCTATTTACAGTCTTTCA  949

seq1  CATGAAGTTCACACACTTTACTTTGGCCTACAAGGTTCCTCATTTTCAAT  1000
      |||||||||||||||||||||||||| |||||  ||||||||||||| ||
seq2  CATGAAGTTCACACACTTTACTTTGGGCTACA--GTTCCTCATTTTC-AT  996

seq1  TTTTATTGTTTCTTTGACATTATCTCCCATCTTTACTTGAATAGATATGC  1050
      ||||||||||   |||||| ||||| ||||||||||||| ||||||||||
seq2  TTTTATTGTT--CTTGACA-TATCT-CCATCTTTACTTG-ATAGATATGC  1041

seq1  CAACAATATCATAACTGGAACACTGTCCCCAAGGTCAGGCTTGGGACATG  1100
      | |||||||||| ||||||||||||||||||  |||| ||||||||||||
seq2  C-ACAATATCAT-ACTGGAACACTGTCCCCA--GTCA-GCTTGGGACATG  1086

seq1  CCCAGCAGACCTTCCCTTTACTCTCCTCCACACCTTTCCCTCCTGTGTGA  1150
       |||||||||  ||||||||||||||||||||| | |     ||| ||||
seq2  -CCAGCAGAC--TCCCTTTACTCTCCTCCACACTTCT-----CTGGGTGA  1128

seq1  AGTGTCTTTCCCACCTCTCTTGGATCATTACTGCAAATACTACGGAGTCT  1200
      ||  ||||  ||| |||||||||| || ||||||||   |||||||  ||
seq2  AGGTTCTT--CCA-CTCTCTTGGA-CA-TACTGCAA--TCTACGGA--CT  1169

seq1  GTTC  1204
      ||||
seq2  GTTC  1173

seq1: chr13_76529564_76530720
seq2: B6Ng01-105L14.g_68_1206 (reverse)

seq1  ATCTGGCCTCTGGCACTGTTCCTTCACGTTTGTATTCCTAATTTCTGCTG  50
      |||||||||||||||| ||||| ||| ||||||||  ||||||   ||||
seq2  ATCTGGCCTCTGGCACCGTTCCCTCA-GTTTGTAT--CTAATT--CGCTG  45

seq1  AT-CAGCCTTCAGCTATGCTCTGAATAGTGAGCTCTGCTCAGACCTGCTT  99
      || ||||||||||||||||||  |||||||||||| ||||||| ||||||
seq2  ATCCAGCCTTCAGCTATGCTCGAAATAGTGAGCTCCGCTCAGA-CTGCTT  94

seq1  ACTTCTGTTATTCCTCCTGAGCCCTCTTATGGGCTTCCTGTCTGTTACTA  149
      || |||| ||||||| |||||||||| |||| || |||||||||||||||
seq2  AC-TCTG-TATTCCT-CTGAGCCCTC-TATGAGCCTCCTGTCTGTTACTA  140

seq1  ACAGTCTCCTCTTGTATCCATACCATACTCACCATTAGAAAACTGTCTCT  199
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  ACAGTCTCCTC-TGTATCCATACCATACTCA-CATTAGAAAACTGTCTCT  188

seq1  CTTTTAGAAATCTACATCTTTTTCAACCACAACTCACAGTAAAATTTCAA  249
      |  ||||||||||||||||||||| ||||| ||||||||||||||| |||
seq2  C--TTAGAAATCTACATCTTTTTC-ACCAC-ACTCACAGTAAAATTCCAA  234

seq1  ATTTGACCATCAGTCCTGACCTCACTGGCCTATTCTGACACCTTTTAAAA  299
        |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  --TTGACCATCAGTCCTGACCTCACTGGCCTATTCTGACACC-TTTAAAA  281

seq1  TGATTGAATGCTTGCTGAGTCACGTAGAGGTAATGCAGAGCTCATTGATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAATGCTTGCTGAGTCACGTAGAGGTAATGCAGAGCTCATTGATG  331

seq1  CCCACAGTGACCCCTGGATGTTTGTGACCCCTGGATGTTTGTGAACCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTGACCCCTGGATGTTTGTGACCCCTGGATGTTTGTGAACCTAA  381

seq1  CTGCAGGATAGCAAAGCCTCCCTCCAGAAAGTCTGCAGCATTTAATGGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGATAGCAAAGCCTCCCTCCAGAAAGTCTGCAGCATTTAATGGTT  431

seq1  AAGGATCTTTCCTTTCATCACATTTGCCTGTTGAACTCTGGAAATGTAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTTTCCTTTCATCACATTTGCCTGTTGAACTCTGGAAATGTAGT  481

seq1  CATTCAGATTGTGCTGTAAGTATACAACCGTGTGCACACCGAATCCTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGATTGTGCTGTAAGTATACAACCGTGTGCACACCGAATCCTAAA  531

seq1  AGCTTAATGCAAAGAAAGGAATGTGAAATATATCAGCATTAAGCTTTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAATGCAAAGAAAGGAATGTGAAATATATCAGCATTAAGCTTTTTT  581

seq1  ATTGATCTTATGTTCCAACATTTGGGTTAAGTTAAATAAAATATTAAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCTTATGTTCCAACATTTGGGTTAAGTTAAATAAAATATTAAAGT  631

seq1  CAATTTCACTTGTCTTTTTAAATTTGTATTTCCATTGGTCAGTATTGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCACTTGTCTTTTTAAATTTGTATTTCCATTGGTCAGTATTGATT  681

seq1  TACAGCAGGGATCTCAAAACTCCAAACTCTTATGTCCACAAGGCTATGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGGGATCTCAAAACTCCAAACTCTTATGTCCACAAGGCTATGGA  731

seq1  AGCAAGGGTAGATAGAGTGCAAAGAACATGGTCACTCTATGGTAAACCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGGTAGATAGAGTGCAAAGAACATGGTCACTCTATGGTAAACCAG  781

seq1  GGAGTTCATGTTTGTTCCTACTTTACCTATACTTGTTATTCAAGGTAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCATGTTTGTTCCTACTTTACCTATACTTGTTATTCAAGGTAGAA  831

seq1  ATGACAGTTTTCACATTACTTAGTATGAATGAGAAATTCAAGATTTTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTTTTCACATTACTTAGTATGAATGAGAAATTCAAGATTTTGTG  881

seq1  CTAAGTGTTAAGATTCCTGAGTTTTTGGCTGTTCATATATTTTCAAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTTAAGATTCCTGAGTTTTTGGCTGTTCATATATTTTCAAAACT  931

seq1  ATCACAAGCCAAATCAATTATATATCGGGTCTAAATTTACCCATGAGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGCCAAATCAATTATATATCGGGTCTAAATTTACCCATGAGTTT  981

seq1  CAACTTCTGGCAAAGAGAGCTGATCCTACATCAGTGCTTGGTACAAATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTGGCAAAGAGAGCTGATCCTACATCAGTGCTTGGTACAAATTG  1031

seq1  TCTGGATCAGAGTAGGTTTGAACACATTGTGCTTGAAGCTTACTAGGAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATCAGAGTAGGTTTGAACACATTGTGCTTGAAGCTTACTAGGAAG  1081

seq1  GAGTTCCTTGGAGTGTACCAGTCAAGAGAATTAAGTATTAGAACGAAAGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTTGGAGTGTACCAGTCAAGAGAATTAAGTATTAGAACGAAAGT  1131

seq1  CAGAATTC  1157
      ||||||||
seq2  CAGAATTC  1139