BAC Information

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BAC

Clone NameB6Ng01-106J07
Chromosome13 (Build37)
Map Location 62,589,085 - 62,779,971
singlet/doubletdoublet
Overlap geneLOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978
Upstream geneEG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik
Downstream geneEG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106J07.bB6Ng01-106J07.g
ACCDH914280DH914281
length9231,133
definitionDH914280|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J07, 5' end.DH914281|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,589,085 - 62,589,876)(62,778,836 - 62,779,971)
sequence
gaattccttcatagcttttaagatgactgtgatcttcaaaggctttacca
cattgcttccattcatagagtttctttccagtttgtactcttttacgaag
ctggagacgatgttgagcaaaggcttcaacaaattgaataattccaaggg
ggttcatttctgtatgaattctttcatgcctttgagcatgacggtgagca
taaaaaaagactttatcacattgagtatattcagacgctttctctgcact
ctgacttctttcatgcctgaggaaaaaatcggcacatgtgaaagctttat
cacactaacgaatactttcatctgtatgattaaatggtactatttgtcta
aatataaagaggaatcagatcttaagatttttatcactttgcttatattc
atgctgttaccccttcattataggatggttttcatcttcaaggatacctg
agaaggaatgagcatgtactacatggttcagctatatatattctttttat
attaaagggttttcccatatttgaacaaagggggagaactcagaccttta
ccacataagtgtattccaatttttcctagactgtgggtcattctatattt
gcaaagtgaaccaggagaaagagaagcatttccacattcctaggactcaa
gagaattttctacagaatgaggttgctgatgtattgtcaatgaagttgga
aaaccaatgatatgaaacttgtatcacattcaaaaatctacccgaactgc
aagcaaatgcatgtcttctaattgttctgggagacagaggggggtacact
atttcattcaatatcccttaagtacacgtggcaggtatccattaggatac
atgatacatctataaaaggacaacgaacaactaaaaagtttaacatttcg
tcactgagtataacattttgttc
gaattctggggagacctagtcattagaagcaacattaagaggtatgttgt
ggaatcctgctgggattctcctgggatgcagcacgagtggtctgtgaggt
agaccacaagcaatactgtgctgagtgtggcagccacggtttaggacagg
agattccatgcccaggaagagcaggtaggctgagctatcagaatctgatc
tgctgggcctgggatggactgtgagtcagacagtggttctcttcgtccat
gtggtgaactgagcagaaacccttggcctctcagccttcccgagtttgga
cttcatggggagagagaggttctgcagtcctggcagtgttaaactgtggt
ccttataaaattactatacagtgtacacactgagacattgttttgtggat
gtagtggaaagacaattttacaaaataaatttcttgtttctagggtttct
gaacactgtattccacagacatgtttgtgtgataaattttacaaatagtt
tcaaaactgagacatgaggtgatggggattatacttggaagaaagatcag
tagtagctggagggtgagaaatataacagattaaggtccagtttgagtca
ttattgtgggcattgagaagtctgtgttgttttaattttctacacataac
gcctttggtaacactgatcaagttcacattttgcctctcagagttgcctt
aggttcttggtgaaagctttactaaactgaggtgctgttttttgcatttc
aaatgctatcccatctgcttgatctcctctccctgtcatagagacctttc
ccatggcttctcctggccccaggtatcttcccacatttgctcatcaagtc
ttccccagattaggagcatcagataccatatcatgctacagttttatcaa
caggctctgctgcttggtcgtaccagctttggggggtttacagctcaagt
tggatgggacacagcattggatgaggccaaaagactggatgatctctggc
cttgttctttctccaattgtactggatgctatcacctaatggcttctaga
gacttgacaacgcctcttgcttctatggtgatgaaattgctggctttcca
attactgggcgtggatttttttactttaaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62589085_62589876
seq2: B6Ng01-106J07.b_46_837

seq1  GAATTCCTTCATAGCTTTTAAGATGACTGTGATCTTCAAAGGCTTTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATAGCTTTTAAGATGACTGTGATCTTCAAAGGCTTTACCA  50

seq1  CATTGCTTCCATTCATAGAGTTTCTTTCCAGTTTGTACTCTTTTACGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTCCATTCATAGAGTTTCTTTCCAGTTTGTACTCTTTTACGAAG  100

seq1  CTGGAGACGATGTTGAGCAAAGGCTTCAACAAATTGAATAATTCCAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACGATGTTGAGCAAAGGCTTCAACAAATTGAATAATTCCAAGGG  150

seq1  GGTTCATTTCTGTATGAATTCTTTCATGCCTTTGAGCATGACGGTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTTCTGTATGAATTCTTTCATGCCTTTGAGCATGACGGTGAGCA  200

seq1  TAAAAAAAGACTTTATCACATTGAGTATATTCAGACGCTTTCTCTGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAGACTTTATCACATTGAGTATATTCAGACGCTTTCTCTGCACT  250

seq1  CTGACTTCTTTCATGCCTGAGGAAAAAATCGGCACATGTGAAAGCTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCTTTCATGCCTGAGGAAAAAATCGGCACATGTGAAAGCTTTAT  300

seq1  CACACTAACGAATACTTTCATCTGTATGATTAAATGGTACTATTTGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAACGAATACTTTCATCTGTATGATTAAATGGTACTATTTGTCTA  350

seq1  AATATAAAGAGGAATCAGATCTTAAGATTTTTATCACTTTGCTTATATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAGAGGAATCAGATCTTAAGATTTTTATCACTTTGCTTATATTC  400

seq1  ATGCTGTTACCCCTTCATTATAGGATGGTTTTCATCTTCAAGGATACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTACCCCTTCATTATAGGATGGTTTTCATCTTCAAGGATACCTG  450

seq1  AGAAGGAATGAGCATGTACTACATGGTTCAGCTATATATATTCTTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAATGAGCATGTACTACATGGTTCAGCTATATATATTCTTTTTAT  500

seq1  ATTAAAGGGTTTTCCCATATTTGAACAAAGGGGGAGAACTCAGACCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGGTTTTCCCATATTTGAACAAAGGGGGAGAACTCAGACCTTTA  550

seq1  CCACATAAGTGTATTCCAATTTTTCCTAGACTGTGGGTCATTCTATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAAGTGTATTCCAATTTTTCCTAGACTGTGGGTCATTCTATATTT  600

seq1  GCAAAGTGAACCAGGAGAAAGAGAAGCATTTCCACATTCCTAGGACTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGAACCAGGAGAAAGAGAAGCATTTCCACATTCCTAGGACTCAA  650

seq1  GAGAATTTTCTACAGAATGAGGTTGCTGATGTATTGTCAATGAAGTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTTCTACAGAATGAGGTTGCTGATGTATTGTCAATGAAGTTGGA  700

seq1  AAACCAATGATATGAAACTTGTATCACATTCAAAAATCTACCCGAACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATGATATGAAACTTGTATCACATTCAAAAATCTACCCGAACTGC  750

seq1  AAGCAAATGCATGTCTTCTAATTGTTCTGGGAGACAGAGGGG  792
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATGCATGTCTTCTAATTGTTCTGGGAGACAGAGGGG  792

seq1: chr13_62778836_62779971
seq2: B6Ng01-106J07.g_69_1201 (reverse)

seq1  GTTTTATAAAGTAAAAAAAATGCACAGCAAGATAAATAGGAAAGCCAGCC  50
      ||||| |||||| |||||||| |||  | ||   ||| |||||||||| |
seq2  GTTTT-TAAAGT-AAAAAAATCCACGCCCAG--TAATTGGAAAGCCAG-C  45

seq1  ATTTTCATCCACACTATGAGCAAGA-GCG-TGTCAAGTCTCTAGAAGCCA  98
      | |||||| |||  ||  ||||||| ||| ||||||||||||||||||||
seq2  AATTTCAT-CACCATAGAAGCAAGAGGCGTTGTCAAGTCTCTAGAAGCCA  94

seq1  TTAGTGGATAGCATCCAGTACAATTGGAGAAAGATACAAGGCCAGAGATC  148
      ||||  |||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAGGTGATAGCATCCAGTACAATTGGAGAAAGA-ACAAGGCCAGAGATC  143

seq1  AT-CAGTCTTTTGGCCCTCATCCAATGCTGTGTCCCATCC-ACCTGAGCT  196
      || ||||||||||| ||||||||||||||||||||||||| || ||||||
seq2  ATCCAGTCTTTTGG-CCTCATCCAATGCTGTGTCCCATCCAACTTGAGCT  192

seq1  GTAAACCCCCCAAAGCTGGTACGACCAAGCAGCAGAGCCTGTTGATAAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTAAACCCCCCAAAGCTGGTACGACCAAGCAGCAGAGCCTGTTGATAAAA  242

seq1  CTGTAGCCTGATATGGTATCTGATGCTCCTAATCTGGGGAAGACTTGATG  296
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCATGATATGGTATCTGATGCTCCTAATCTGGGGAAGACTTGATG  292

seq1  AGCAAATGTGGGAAGATACCTGGGGCCAGGAGAAGCCATGGGAAAGGTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGTGGGAAGATACCTGGGGCCAGGAGAAGCCATGGGAAAGGTCT  342

seq1  CTATGACAGGGAGGGGAGATC-AGCAGATGGGATAGCATTTGAAATGCAA  395
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  CTATGACAGGGAGAGGAGATCAAGCAGATGGGATAGCATTTGAAATGCAA  392

seq1  AAAACAGCACCTCAGTTTAGTAAAGCTTTCACCAAGAACCTAAGGCAACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCACCTCAGTTTAGTAAAGCTTTCACCAAGAACCTAAGGCAACT  442

seq1  CTGAGAGGCAAAATGTGAACTTGATCAGTGTTACCAAAGGCGTTATGTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGCAAAATGTGAACTTGATCAGTGTTACCAAAGGCGTTATGTGT  492

seq1  AGAAAATTAAAACAACACAGACTTCTCAATGCCCACAATAATGACTCAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTAAAACAACACAGACTTCTCAATGCCCACAATAATGACTCAAA  542

seq1  CTGGACCTTAATCTGTTATATTTCTCACCCTCCAGCTACTACTGATCTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCTTAATCTGTTATATTTCTCACCCTCCAGCTACTACTGATCTTT  592

seq1  CTTCCAAGTATAATCCCCATCACCTCATGTCTCAGTTTTGAAACTATTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGTATAATCCCCATCACCTCATGTCTCAGTTTTGAAACTATTTG  642

seq1  TAAAATTTATCACACAAACATGTCTGTGGAATACAGTGTTCAGAAACCCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTATCACACAAACATGTCTGTGGAATACAGTGTTCAGAAACCCT  692

seq1  AGAAACAAGAAATTTATTTTGTAAAATTGTCTTTCCACTACATCCACAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGAAATTTATTTTGTAAAATTGTCTTTCCACTACATCCACAAA  742

seq1  ACAATGTCTCAGTGTGTACACTGTATAGTAATTTTATAAGGACCACAGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCTCAGTGTGTACACTGTATAGTAATTTTATAAGGACCACAGTT  792

seq1  TAACACTGCCAGGACTGCAGAACCTCTCTCTCCCCATGAAGTCCAAACTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGCCAGGACTGCAGAACCTCTCTCTCCCCATGAAGTCCAAACTC  842

seq1  GGGAAGGCTGAGAGGCCAAGGGTTTCTGCTCAGTTCACCACATGGACGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCTGAGAGGCCAAGGGTTTCTGCTCAGTTCACCACATGGACGAA  892

seq1  GAGAACCACTGTCTGACTCACAGTCCATCCCAGGCCCAGCAGATCAGATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCACTGTCTGACTCACAGTCCATCCCAGGCCCAGCAGATCAGATT  942

seq1  CTGATAGCTCAGCCTACCTGCTCTTCCTGGGCATGGAATCTCCTGTCCTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGCTCAGCCTACCTGCTCTTCCTGGGCATGGAATCTCCTGTCCTA  992

seq1  AACCGTGGCTGCCACACTCAGCACAGTATTGCTTGTGGTCTACCTCACAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTGGCTGCCACACTCAGCACAGTATTGCTTGTGGTCTACCTCACAG  1042

seq1  ACCACTCGTGCTGCATCCCAGGAGAATCCCAGCAGGATTCCACAACATAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCGTGCTGCATCCCAGGAGAATCCCAGCAGGATTCCACAACATAC  1092

seq1  CTCTTAATGTTGCTTCTAATGACTAGGTCTCCCCAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATGTTGCTTCTAATGACTAGGTCTCCCCAGAATTC  1133