BAC Information

Click to search

BAC

Clone NameB6Ng01-106N16
Chromosome13 (Build37)
Map Location 113,965,235 - 113,966,329
singlet/doubletsinglet
Overlap geneGzmk
Upstream geneLOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik
Downstream geneEsm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106N16.bB6Ng01-106N16.g
ACCDH914477DH914478
length1,0931,253
definitionDH914477|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N16, 5' end.DH914478|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ttatttgttgaaaagtttgcctatttcgaaatcggaatggggatggaatt
tctcaggggatgtggattggatttcctaggattgattcgaattcaaatcc
aacatgcctgctaacccaaagctctggaggatgaggacaagccaaaatcc
ccaggagcaacaggctaacaggaaagtgggtgtgtctgtaactgctctcc
catggacagacagactgactgacagatgtgagggccaaacactgctgtgg
aaggtagactcaggtgaagggagatggctgagatttcaggtgctcattag
ctgttaccttgttctttggctagctattgactttgaaattttgtctctgc
agggacaggctaaataaccctgctccttgaatttcaactgtcccaccatg
gtcaaattttctgcccatggaataaataaaattacctgagttctagaatt
ctctctctctctctctctttctctctctcttgctctctctctctctctct
ccctctctctccctctctctccctctctctctccctccctctctccctct
ctcttctctggttttatttagttgtctattgtttatttgtttgttttgag
acagagtttttgttttgttttgtttgttttgttttgttttgttttgtttt
gagatagggcttctctgtgtaacagtcttagaactcactttgtagaccag
gctggtctcaaactcacagatattaatctgcctctgtctcctgagtgctg
gaattaaaggagtgctcaccaccactcatctgattctatttctttaaaaa
caacaaacaaacaaacaaacaaaaacctttttttacacacacacacacac
acacacacacacacacgtactgtggtgtgtgcatagaggttagaggacac
ctttcgggagtcagctctcagggtggtcaggcagcttcatagaagtccct
tacttgaatgtccctttactcgatcctctctttaattcatctgatatgaa
tttgcacgggagagtaggtaatagcggtcagggtcataattgtacatcag
aaagtttttctaggagtggctcatcacatatgggagggatttg
gaattctaaaccccgaaagcaagaagcttccaagttacatttaaaggaaa
gttcattagaccaaaaaaataatttcttttttagcagagtctccctacgt
gtcccaggctggccttgaattcaggacccagcctcaaaccactaaatgct
cagattgcaggcattttccaaacatgtctagttgccaaacagaagacaca
gcagaagcagcccttgtcaacagagcaaaagcaccaaaccataaagatga
gtgagaggaatcatggagcaaatagaactcaaagcaaataggaaaaggaa
cacatttatcaagcgtaaggccatatgtacatataaaatccttcagtgca
gataaatccccaaattaaaaagtaaagcctggattaaacagattaagaaa
taaaataaagcccaacgatatggtgcctatgagaaactgacttcactggt
aaggcacacgcagactggaaacgaaaacatatcccacaaagacagaaacc
aaaaataatcagagacacctattcttcattaagacaaaataaatttaaag
agaaaaactgcaaaaagaaatcaagacggttagaatgaccaaagaatcaa
tgaaacaggaacaggtaacagagccaaaagtctcagaaggttaacggcat
ttgccagcaagtcaggtgtcccaagttaagactgatcttatgacccacac
aggggaaaaagagactcaacttcaagtgttgtcctttggcttccacatga
acaccatggtaccccccactctctcatacacacacacacacacacacaca
cacacacacacacacacacacacaagcttttaaagtgtaaagactataaa
cagttgtaagtacatacgaacctgtgtagaagcacagacttccataaaca
atctttagtagagctaaagagaaagatgggatctaatacaacatcagtag
gaggccttcagtaacacacttctttgaaatgaataggatcatccagaata
gaaaaagtgacaaacataattacagcatactctagatcaaatggctttag
ttaataggtaccaacaaagcattattgaaaaaagactgctttacatttct
agagagactggaactttttgtaagatctcacaagcccgaagtgggcagct
ttagactgtaacccactttgtttgattaacttgcctgaggcattggatta
caacctcacttgccttgtattcacatgataattcagcctttttaaaccaa
aac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113965235_113966329
seq2: B6Ng01-106N16.b_58_1150

seq1  TTATTTGTTGAAAAGTTTGCCTATTTCGAAATCGGAATGGGGATGGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTGAAAAGTTTGCCTATTTCGAAATCGGAATGGGGATGGAATT  50

seq1  TCTCAGGGGATGTGGATTGGATTTCCTAGGATTGATTCGAATTCAAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGGATGTGGATTGGATTTCCTAGGATTGATTCGAATTCAAATCC  100

seq1  AACATGCCTGCTAACCCAAAGCTCTGGAGGATGAGGACAAGCCAAAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCCTGCTAACCCAAAGCTCTGGAGGATGAGGACAAGCCAAAATCC  150

seq1  CCAGGAGCAACAGGCTAACAGGAAAGTGGGTGTGTCTGTAACTGCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCAACAGGCTAACAGGAAAGTGGGTGTGTCTGTAACTGCTCTCC  200

seq1  CATGGACAGACAGACTGACTGACAGATGTGAGGGCCAAACACTGCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACAGACAGACTGACTGACAGATGTGAGGGCCAAACACTGCTGTGG  250

seq1  AAGGTAGACTCAGGTGAAGGGAGATGGCTGAGATTTCAGGTGCTCATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGACTCAGGTGAAGGGAGATGGCTGAGATTTCAGGTGCTCATTAG  300

seq1  CTGTTACCTTGTTCTTTGGCTAGCTATTGACTTTGAAATTTTGTCTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACCTTGTTCTTTGGCTAGCTATTGACTTTGAAATTTTGTCTCTGC  350

seq1  AGGGACAGGCTAAATAACCCTGCTCCTTGAATTTCAACTGTCCCACCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGGCTAAATAACCCTGCTCCTTGAATTTCAACTGTCCCACCATG  400

seq1  GTCAAATTTTCTGCCCATGGAATAAATAAAATTACCTGAGTTCTAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTTTCTGCCCATGGAATAAATAAAATTACCTGAGTTCTAGAATT  450

seq1  CTCTCTCTCTCTCTCTCTTTCTCTCTCTCTTGCTCTCTCTCTCTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTTTCTCTCTCTCTTGCTCTCTCTCTCTCTCTCT  500

seq1  CCCTCTCTCTCCCTCTCTCTCCCTCTCTCTCTCCCTCCCTCTCTCCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTCTCCCTCTCTCTCCCTCTCTCTCTCCCTCCCTCTCTCCCTCT  550

seq1  CTCTTCTCTGGTTTTATTTAGTTGTCTATTGTTTATTTGTTTGTTTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTGGTTTTATTTAGTTGTCTATTGTTTATTTGTTTGTTTTGAG  600

seq1  ACAGAGTTTTTGTTTTGTTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTTTTGTTTTGTTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTT  650

seq1  GAGATAGGGCTTCTCTGTGTAACAGTCTTAGAACTCACTTTGTAGACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGGGCTTCTCTGTGTAACAGTCTTAGAACTCACTTTGTAGACCAG  700

seq1  GCTGGTCTCAAACTCACAGATATTAATCTGCCTCTGTCTCCTGAGTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCTCAAACTCACAGATATTAATCTGCCTCTGTCTCCTGAGTGCTG  750

seq1  GAATTAAAGGAGTGCTCACCACCACTCATCTGATTCTATTTCTTTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAGGAGTGCTCACCACCACTCATCTGATTCTATTTCTTTAAAAA  800

seq1  CAAACAAACAAACAAACAAACAAAAACC-TTTTTTACACACACACACACA  849
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  C-AACAAACAAACAAACAAACAAAAACCTTTTTTTACACACACACACACA  849

seq1  CACACACACACACACACGTACTGTGGTGTGTGCATAGAGGTTAGAGGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACGTACTGTGGTGTGTGCATAGAGGTTAGAGGACA  899

seq1  GCTTTCGGGAGTCAGCTCTCA-GGTTGTCAGGCAGCTTCATAGTAAGTCC  948
       |||||||||||||||||||| ||| ||||||||||||||||| ||||||
seq2  CCTTTCGGGAGTCAGCTCTCAGGGTGGTCAGGCAGCTTCATAG-AAGTCC  948

seq1  CTTTACTTG-ATGTCCCTTTACTCGATCCTTCTCTTTATTTCAATCTAGA  997
      | ||||||| ||||||||||||||||||| |||||||| ||| |||| ||
seq2  C-TTACTTGAATGTCCCTTTACTCGATCC-TCTCTTTAATTC-ATCT-GA  994

seq1  TATGAATTTGCACGGGAGAG-AAGTAATAGC-GTCAGGCTCATTAATTTG  1045
      |||||||||||||||||||| | |||||||| |||||| ||||  | |||
seq2  TATGAATTTGCACGGGAGAGTAGGTAATAGCGGTCAGGGTCAT--AATTG  1042

seq1  TACATCAGAAAGTTTTTCTAGGAGTGGCCTTACACATAT-GGAGGGATTT  1094
      ||||||||||||||||||||||||||||    ||||||| ||||||||||
seq2  TACATCAGAAAGTTTTTCTAGGAGTGGCTCATCACATATGGGAGGGATTT  1092

seq1  G  1095
      |
seq2  G  1093