BAC Information

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BAC

Clone NameB6Ng01-107A16
Chromosome13 (Build37)
Map Location 20,887,135 - 20,888,163
singlet/doubletsinglet
Overlap geneAoah
Upstream geneGpr141, LOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107A16.bB6Ng01-107A16.g
ACCDH914617DH914618
length1,2351,021
definitionDH914617|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A16, 5' end.DH914618|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaagacttttccccac
cttctgctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcatttctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttc
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagttttttatcat
acagatctttcacttccttagttagagtcacgccaagatattttatatta
ttttgtgactattgagaagggtgttgtttccctaatttctttctcagcct
gttattctttgtatagagaaggccattgacttgtttgagttattttatat
ttcagctacttcaccgaagctgttattcaagtttaggagttctctggtag
attttaggtcacttataatactatctattcatctgcaaaggaattttgac
ttcgatttcattattcccttgaatcttgtgcgatgctggccaacttcaga
catagtgtgaaagagtaggagaaaaagatgaggag
gaattctcttaacatggcttccaacaatccacagccttgctggggacctg
gcagggaaggaaatgggaaccttgtgtccactctactggtgtgaaggtct
ggggatatcatggtagattgctagactaaacccatttgtatccccctgga
aacagaagtaactcccggagactttccctggtggatttcatttgataagc
ttgaagcagctttgagaaaatagaatggcagcaagctgtgattttaggaa
actaagtaaagatgacccctcatcctacacctggttccaaaggaaccatt
gaatcgggttctttgaatgctattttaaaaaggctttgcctctagagaca
cattccctggtgtgtataataaaatcatggttttgtcaaaacctgactaa
gtcagactttttgttattgcttctacacagaactcctaagtgtcagaact
tgtacccaggttccctgtgtgtagtatttggccaccacagttatccatag
ggtgatttttgggcaggactccatattgagtctgtttactcgtaattgtt
tcttagttctgagtctatgtggctccactacccatgccatctcagtcccc
tcttctgctacatgtccattgtatagtatgaatatggaagttgtcctggc
tagggttaccattgctgtgatgaaacaccacaatcaaagcaacttggggg
aggaaagggtttatctcagtttacacttccaggtaacagtccatcactga
gggaagtcagggcaggaactcaaacagggaaggaacttggatgcagagct
gatgaagagcttgtggaggggagttgtttactagtttgctcctcatggct
tgctcagcctgctttcatagagaacccaggacaaccaagcctaggaaaca
acccacccaccatgaactagactctactccatgagttcctaattaagaaa
atgccctgtagctgcagtctgatggaggcttcttagtgaggttctttcga
tgactcagcgtggtcacaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20887135_20888163
seq2: B6Ng01-107A16.g_67_1087 (reverse)

seq1  AAATGTGACATACGCTGAAGTCATCTGAAAGAACCTCAACTAAGAAGCCT  50
      || ||||||  |||||| ||||||| ||||||||||| ||||||||||||
seq2  AATTGTGAC-CACGCTG-AGTCATC-GAAAGAACCTC-ACTAAGAAGCCT  46

seq1  CCATCAGACTGCCAAGCCTACAGGGCATTTTCTTAATTAGGAACTCATGG  100
      ||||||||||||  || |||||||||||||||||||||||||||||||||
seq2  CCATCAGACTGC--AG-CTACAGGGCATTTTCTTAATTAGGAACTCATGG  93

seq1  AGTAGAGTCTAGTTCATGGTGGGTGGGTTGTTTCCTAGGCTTGGTTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGTCTAGTTCATGGTGGGTGGGTTGTTTCCTAGGCTTGGTTGTCC  143

seq1  TGGGTTCTCTATGAAAGCAGGCTGAGCAAGCCATGAGGAGCAAACTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTCTATGAAAGCAGGCTGAGCAAGCCATGAGGAGCAAACTAGTA  193

seq1  AACAACTCCCCTCCACAAGCTCTTCATCAGCTCCTGCATCCAAGTTCCTT  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACAACTCCCCTCCACAAGCTCTTCATCAGCT-CTGCATCCAAGTTCCTT  242

seq1  CCCTGTTTGAGTTCCTGCCCTGACTTCCCTCAGTGATGGACTGTTACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTGAGTTCCTGCCCTGACTTCCCTCAGTGATGGACTGTTACCTG  292

seq1  GAAGTGTAAACTGAGATAAACCCTTTCCTCCCCCAAGTTGCTTTGATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTAAACTGAGATAAACCCTTTCCTCCCCCAAGTTGCTTTGATTGT  342

seq1  GGTGTTTCATCACAGCAATGGTAACCCTAGCCAGGACAACTTCCATATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTCATCACAGCAATGGTAACCCTAGCCAGGACAACTTCCATATTC  392

seq1  ATACTATACAATGGACATGTAGCAGAAGAGGGGACTGAGATGGCATGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATACAATGGACATGTAGCAGAAGAGGGGACTGAGATGGCATGGGT  442

seq1  AGTGGAGCCACATAGACTCAGAACTAAGAAACAATTACGAGTAAACAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCCACATAGACTCAGAACTAAGAAACAATTACGAGTAAACAGAC  492

seq1  TCAATATGGAGTCCTGCCCAAAAATCACCCTATGGATAACTGTGGTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGGAGTCCTGCCCAAAAATCACCCTATGGATAACTGTGGTGGCC  542

seq1  AAATACTACACACAGGGAACCTGGGTACAAGTTCTGACACTTAGGAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTACACACAGGGAACCTGGGTACAAGTTCTGACACTTAGGAGTTC  592

seq1  TGTGTAGAAGCAATAACAAAAAGTCTGACTTAGTCAGGTTTTGACAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGAAGCAATAACAAAAAGTCTGACTTAGTCAGGTTTTGACAAAAC  642

seq1  CATGATTTTATTATACACACCAGGGAATGTGTCTCTAGAGGCAAAGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTTATTATACACACCAGGGAATGTGTCTCTAGAGGCAAAGCCTT  692

seq1  TTTAAAATAGCATTCAAAGAACCCGATTCAATGGTTCCTTTGGAACCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAGCATTCAAAGAACCCGATTCAATGGTTCCTTTGGAACCAGG  742

seq1  TGTAGGATGAGGGGTCATCTTTACTTAGTTTCCTAAAATCACAGCTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGATGAGGGGTCATCTTTACTTAGTTTCCTAAAATCACAGCTTGCT  792

seq1  GCCATTCTATTTTCTCAAAGCTGCTTCAAGCTTATCAAATGAAATCCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTATTTTCTCAAAGCTGCTTCAAGCTTATCAAATGAAATCCACC  842

seq1  AGGGAAAGTCTCCGGGAGTTACTTCTGTTTCCAGGGGGATACAAATGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGTCTCCGGGAGTTACTTCTGTTTCCAGGGGGATACAAATGGGT  892

seq1  TTAGTCTAGCAATCTACCATGATATCCCCAGACCTTCACACCAGTAGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTAGCAATCTACCATGATATCCCCAGACCTTCACACCAGTAGAGT  942

seq1  GGACACAAGGTTCCCATTTCCTTCCCTGCCAGGTCCCCAGCAAGGCTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAAGGTTCCCATTTCCTTCCCTGCCAGGTCCCCAGCAAGGCTGTG  992

seq1  GATTGTTGGAAGCCATGTTAAGAGAATTC  1029
      |||||||||||||||||||||||||||||
seq2  GATTGTTGGAAGCCATGTTAAGAGAATTC  1021