BAC Information

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BAC

Clone NameB6Ng01-107K20
Chromosome13 (Build37)
Map Location 110,507,391 - 110,628,477
singlet/doubletdoublet
Overlap genePde4d
Upstream geneLOC621663, LOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107K20.bB6Ng01-107K20.g
ACCDH915076DH915077
length1,165529
definitionDH915076|Mus musculus domesticus DNA, BAC clone: B6Ng01-107K20, 5' end.DH915077|Mus musculus domesticus DNA, BAC clone: B6Ng01-107K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,507,391 - 110,508,574)(110,627,943 - 110,628,477)
sequence
gaattcataaaacatcaatataatggcaccacaccatgtgcctcctgaaa
tatatgcaggttgcacatgatagtatatattatatataagtgtaaaatga
ccaggtcagagaggctggacatttcaaattattttactgccgtatttaaa
atttttgtttacagtaggttatatttcagcaaacccatataagctaaaaa
tattgtgtaaaaaaggccactgaatatacttagctaatgaacaccatacc
taaacattcttttaattgatagtggtcaaaacacaaaaccaactttccaa
tacaacattgaagactacctgtaaggcattgagcactagacagaatgtgt
aaaatcgacaagacaaaaccaatagcaaacatataggtatgcttgttaaa
aggttgaaaactccttagctgaaccatggcaagacagggactatctatct
gagtatcctactgttccataccattttggttacaatagtgccacatcctg
taatgccagcacattaaagaggcagaggcaggaggatcaagagatctttg
atagggtttgttgaggtggctcaatgataagaacatgttctacttgtcca
gaggatgaaggttcgattcccaccacccacatgatggctcacaaccatct
gtacctctggccctggggatctgatgccctcttctggcctcttcagaccc
caggcgcacgcatggtatgcaggcatccatgtaggtaaaacactcatatg
cataagaatgagttaagagcagctttagcaacatagtaaaacaaaacaaa
agttaggaacataacaagcagttcccatatcttgtaggataagcatcttc
tctcaccatatgggaccaagtatgtctcatgttctcacaggatcatagca
gtttatccagaacaaaatgatttgtctagctctttctctcacatgggcca
tttactgtctccctcctcttccattttattttttttttattcgccccaca
ctcattttatagtatcttgtaaaagaatcttaatcttctatctgctaaat
acttagcaattttagaaacactgtactgatcaaaccttaatttctataac
tcgatgcatggcatgttcgtacattttaattccaactaaggacgtattgt
ctgaggaaattttgt
caaggtgacttcctcaaagtcacagagctgtcttgaaaaccacagtcatc
ttacgccaaagcttttacacgtgatcacgtgtgccccagtagcctgcgta
gagattcactttggttaccagttaaaaatacaagctcacctattccttcc
caagcttgctccatcaaagcttaaggggtgggggtggggggcaggtcacg
tgttttttatctgagcttcatgggttttcaagcaggaaacctgcttgaga
atgctcatacagggtagaagtgaagaaaggaaactatcgtattcaataga
agagagaaaagaagggaagacggaaaggaagggagggaggaaaggtgaaa
agtaggaaagagaagaaatgagaggcaaataggagagggaagaagccggg
gagaagagatctcagcactaatgtgcggcagctgccggaccaagtgaagg
ctcttactaaatggatgtgttctttctatgtgcgcccagcttgtttactg
caaacccaaggagtcagccaacaggaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110507391_110508574
seq2: B6Ng01-107K20.b_45_1209

seq1  GAATTCATAAAACATCAATATAATGGCACCACACCATGTGCCTCCTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAACATCAATATAATGGCACCACACCATGTGCCTCCTGAAA  50

seq1  TATATGCAGGTTGCACATGATAGTATATATTATATATAAGTGTAAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCAGGTTGCACATGATAGTATATATTATATATAAGTGTAAAATGA  100

seq1  CCAGGTCAGAGAGGCTGGACATTTCAAATTATTTTACTGCCGTATTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCAGAGAGGCTGGACATTTCAAATTATTTTACTGCCGTATTTAAA  150

seq1  ATTTTTGTTTACAGTAGGTTATATTTCAGCAAACCCATATAAGCTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTTACAGTAGGTTATATTTCAGCAAACCCATATAAGCTAAAAA  200

seq1  TATTGTGTAAAAAAGGCCACTGAATATACTTAGCTAATGAACACCATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTAAAAAAGGCCACTGAATATACTTAGCTAATGAACACCATACC  250

seq1  TAAACATTCTTTTAATTGATAGTGGTCAAAACACAAAACCAACTTTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTCTTTTAATTGATAGTGGTCAAAACACAAAACCAACTTTCCAA  300

seq1  TACAACATTGAAGACTACCTGTAAGGCATTGAGCACTAGACAGAATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATTGAAGACTACCTGTAAGGCATTGAGCACTAGACAGAATGTGT  350

seq1  AAAATCGACAAGACAAAACCAATAGCAAACATATAGGTATGCTTGTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCGACAAGACAAAACCAATAGCAAACATATAGGTATGCTTGTTAAA  400

seq1  AGGTTGAAAACTCCTTAGCTGAACCATGGCAAGACAGGGACTATCTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAAAACTCCTTAGCTGAACCATGGCAAGACAGGGACTATCTATCT  450

seq1  GAGTATCCTACTGTTCCATACCATTTTGGTTACAATAGTGCCACATCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCCTACTGTTCCATACCATTTTGGTTACAATAGTGCCACATCCTG  500

seq1  TAATGCCAGCACATTAAAGAGGCAGAGGCAGGAGGATCAAGAGATCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAGCACATTAAAGAGGCAGAGGCAGGAGGATCAAGAGATCTTTG  550

seq1  ATAGGGTTTGTTGAGGTGGCTCAATGATAAGAACATGTTCTACTTGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTTTGTTGAGGTGGCTCAATGATAAGAACATGTTCTACTTGTCCA  600

seq1  GAGGATGAAGGTTCGATTCCCACCACCCACATGATGGCTCACAACCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGAAGGTTCGATTCCCACCACCCACATGATGGCTCACAACCATCT  650

seq1  GTACCTCTGGCCCTGGGGATCTGATGCCCTCTTCTGGCCTCTTCAGACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCTGGCCCTGGGGATCTGATGCCCTCTTCTGGCCTCTTCAGACCC  700

seq1  CAGGCGCACGCATGGTATGCAGGCATCCATGTAGGTAAAACACTCATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGCACGCATGGTATGCAGGCATCCATGTAGGTAAAACACTCATATG  750

seq1  CATAAGAATGAGTTAAGAGCAGCTTTAGCAACATAGTAAAACAAAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAATGAGTTAAGAGCAGCTTTAGCAACATAGTAAAACAAAACAAA  800

seq1  AGTTAGGAACATAACAAGCAGTTCCCATATCTTGTAGGATAAGCATCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGAACATAACAAGCAGTTCCCATATCTTGTAGGATAAGCATCTTC  850

seq1  TCTCACCATATGGGACCAAGTATGTCTCATGTTCTCACAGGATCATAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCATATGGGACCAAGTATGTCTCATGTTCTCACAGGATCATAGCA  900

seq1  GTTTATCCAGAACAAAATGATTTGTCTAGCTCTTTCTCTCACATGGGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCAGAACAAAATGATTTGTCTAGCTCTTTCTCTCACATGGGCCA  950

seq1  TTTACTGTCTCCCCTCCTCTTCCCATTTTATTTTTTTTTATTTCGCCCCA  1000
      |||||||||| |||||||||| |||||||||||||||||  |||||||||
seq2  TTTACTGTCT-CCCTCCTCTT-CCATTTTATTTTTTTTTTATTCGCCCCA  998

seq1  CACCCATTTTATTAAGTATCTTTGTAAAAAGAAATCTTAATCTTCCTATC  1050
      ||| ||||||||  |||||| ||||||||   |||||||||||| |||||
seq2  CACTCATTTTAT--AGTATC-TTGTAAAA--GAATCTTAATCTT-CTATC  1042

seq1  TGGCTAAATACTTAGGCAAAATTTTAAGAAACACTGTTACTGAGTCAAAA  1100
      | |||||||||||| ||||   ||| |||||||||| |||||| || |||
seq2  T-GCTAAATACTTA-GCAA---TTTTAGAAACACTG-TACTGA-TC-AAA  1084

seq1  CCTTAAATGTCTATAAACTCGATGCATGCGATG-TCGTACATTTTAA-TC  1148
      |||| ||| ||||| |||||||||||||  ||| ||||||||||||| ||
seq2  CCTT-AATTTCTAT-AACTCGATGCATGGCATGTTCGTACATTTTAATTC  1132

seq1  CAACTAAGGAACGTATTTGCTGTAGAGAAATTTTGT  1184
      ||||||||| |||||||  ||| || ||||||||||
seq2  CAACTAAGG-ACGTATTGTCTG-AG-GAAATTTTGT  1165

seq1: chr13_110627943_110628477
seq2: B6Ng01-107K20.g_68_602 (reverse)

seq1  GCTTCCTGTTGGCTGACTCCTTGGGTTTGCAGTAAACAAGCTGGGCGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGTTGGCTGACTCCTTGGGTTTGCAGTAAACAAGCTGGGCGCAC  50

seq1  ATAGAAAGAACACATCCATTTAGTAAGAGCCTTCACTTGGTCCGGCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGAACACATCCATTTAGTAAGAGCCTTCACTTGGTCCGGCAGCT  100

seq1  GCCGCACATTAGTGCTGAGATCTCTTCTCCCCGGCTTCTTCCCTCTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCACATTAGTGCTGAGATCTCTTCTCCCCGGCTTCTTCCCTCTCCTA  150

seq1  TTTGCCTCTCATTTCTTCTCTTTCCTACTTTTCACCTTTCCTCCCTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTCATTTCTTCTCTTTCCTACTTTTCACCTTTCCTCCCTCCCT  200

seq1  TCCTTTCCGTCTTCCCTTCTTTTCTCTCTTCTATTGAATACGATAGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCGTCTTCCCTTCTTTTCTCTCTTCTATTGAATACGATAGTTTC  250

seq1  CTTTCTTCACTTCTACCCTGTATGAGCATTCTCAAGCAGGTTTCCTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCACTTCTACCCTGTATGAGCATTCTCAAGCAGGTTTCCTGCTT  300

seq1  GAAAACCCATGAAGCTCAGATAAAAAACACGTGACCTGCCCCCCACCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCATGAAGCTCAGATAAAAAACACGTGACCTGCCCCCCACCCCC  350

seq1  ACCCCTTAAGCTTTGATGGAGCAAGCTTGGGAAGGAATAGGTGAGCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTAAGCTTTGATGGAGCAAGCTTGGGAAGGAATAGGTGAGCTTGT  400

seq1  ATTTTTAACTGGTAACCAAAGTGAATCTCTACGCAGGCTACTGGGGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAACTGGTAACCAAAGTGAATCTCTACGCAGGCTACTGGGGCACA  450

seq1  CGTGATCACGTGTAAAAGCTTTGGCGTAAGATGACTGTGGTTTTCAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATCACGTGTAAAAGCTTTGGCGTAAGATGACTGTGGTTTTCAAGAC  500

seq1  AGCTCTGTGACTTTGAGGAAGTCACCTTGGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTGACTTTGAGGAAGTCACCTTGGAATTC  535