BAC Information

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BAC

Clone NameB6Ng01-107M23
Chromosome13 (Build37)
Map Location 21,363,418 - 21,489,004
singlet/doubletdoublet
Overlap geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream genePgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107M23.bB6Ng01-107M23.g
ACCDH915166DH915167
length1,059214
definitionDH915166|Mus musculus domesticus DNA, BAC clone: B6Ng01-107M23, 5' end.DH915167|Mus musculus domesticus DNA, BAC clone: B6Ng01-107M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,487,941 - 21,489,004)(21,363,418 - 21,363,631)
sequence
gaattccaaactcccaccagaatggcctagtaagctttacttatatacat
agggtcttaccctacagctgcaaactgttctctccacaaaccagtccaca
gttgtaagaaacacatggtcaagtttatcacagcaatggcctctgctctg
cactagttacattactttcttgttgcaatgacaaaataccaacagaagca
aacaaagtttattttggttgacagttagagggtacaatccatcatgggag
cagctactcacattctgtccagtgaggaaacagagaggtacgctggttcc
ccatttgctatcaccttgactgcgccccgagcccatggaatcatgccacc
cacagtcattagggtcttctgacttacattcagtctctccagaacaccct
cacagacatttatgattctaagtcccacaagatgacacagagacatttga
acgtggggatctcctcagctgctctttggcagtttccttggagtcctggg
cctaggaggaggggaacatttgcaactatagtggcttatggttctctcca
cctctcagtagtcttttacagaaatacaactcacagctacagtgaaacgg
gagaactgcttggttcgggatggctagagaatcaagggaaagcacaacct
tggactcacactctgcagaggaccagatggagctactggtcataaaggtg
gaacaagaagaggcctcccccttggcagaggagaccagttggctgggcag
tcctgggcctgaccgctcccgccagcgcttccgtgctttccgctacccag
aggcagccgggccccggcaggcgctgagccggctccgcgagctctgcaga
cagtggctgcggccagacatgcacagcaaggagcagatcctggagctgct
ggtgctggagcagttcctgaccatcctgccaggggagctgcaggcctggg
tgcgcgagcagcacccgacagcggggagaggtggtggcgctgctggagta
cttggacaggcagctggatgacccacctccacaggtagaagaacagttag
tttgacccg
ttgattcttagctggtgagagactttacccagactcctgggttaaagttt
ccttttctttctcacgctcccttagtcttagcttctctatcttgcctctc
atgcagactttgttagttttctgaagtcatgcttccatagacctgttcac
agggtgagcttatggtttcctatctataaatcacaagagtggagtagaag
gggagggggagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21487941_21489004
seq2: B6Ng01-107M23.b_45_1103 (reverse)

seq1  CGGGTCTAACTAAACCTGTTCCTTCTACCTGTGGAGGTGTGTCATCCAGC  50
      |||||| ||||||  ||||| |||||||||||||||||| ||||||||||
seq2  CGGGTCAAACTAA--CTGTT-CTTCTACCTGTGGAGGTGGGTCATCCAGC  47

seq1  TGCCTGTCCAAGTACTCCAGCAGCGCCACCACCTCCTCCCCGCTGTCGGG  100
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TGCCTGTCCAAGTACTCCAGCAGCGCCACCACCT-CTCCCCGCTGTC-GG  95

seq1  GTGCTGCTCGCGCACCCAGGCCTGCAGCTCCCCTGGCAGGATGGTCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTCGCGCACCCAGGCCTGCAGCTCCCCTGGCAGGATGGTCAGGA  145

seq1  ACTGCTCCAGCACCAGCAGCTCCAGGATCTGCTCCTTGCTGTGCATGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCAGCACCAGCAGCTCCAGGATCTGCTCCTTGCTGTGCATGTCT  195

seq1  GGCCGCAGCCACTGTCTGCAGAGCTCGCGGAGCCGGCTCAGCGCCTGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCAGCCACTGTCTGCAGAGCTCGCGGAGCCGGCTCAGCGCCTGCCG  245

seq1  GGGCCCGGCTGCCTCTGGGTAGCGGAAAGCACGGAAGCGCTGGCGGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCGGCTGCCTCTGGGTAGCGGAAAGCACGGAAGCGCTGGCGGGAGC  295

seq1  GGTCAGGCCCAGGACTGCCCAGCCAACTGGTCTCCTCTGCCAAGGGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGCCCAGGACTGCCCAGCCAACTGGTCTCCTCTGCCAAGGGGGAG  345

seq1  GCCTCTTCTTGTTCCACCTTTATGACCAGTAGCTCCATCTGGTCCTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTCTTGTTCCACCTTTATGACCAGTAGCTCCATCTGGTCCTCTGC  395

seq1  AGAGTGTGAGTCCAAGGTTGTGCTTTCCCTTGATTCTCTAGCCATCCCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGAGTCCAAGGTTGTGCTTTCCCTTGATTCTCTAGCCATCCCGA  445

seq1  ACCAAGCAGTTCTCCCGTTTCACTGTAGCTGTGAGTTGTATTTCTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCAGTTCTCCCGTTTCACTGTAGCTGTGAGTTGTATTTCTGTAAA  495

seq1  AGACTACTGAGAGGTGGAGAGAACCATAAGCCACTATAGTTGCAAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACTGAGAGGTGGAGAGAACCATAAGCCACTATAGTTGCAAATGTT  545

seq1  CCCCTCCTCCTAGGCCCAGGACTCCAAGGAAACTGCCAAAGAGCAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTCCTAGGCCCAGGACTCCAAGGAAACTGCCAAAGAGCAGCTGA  595

seq1  GGAGATCCCCACGTTCAAATGTCTCTGTGTCATCTTGTGGGACTTAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCCCCACGTTCAAATGTCTCTGTGTCATCTTGTGGGACTTAGAAT  645

seq1  CATAAATGTCTGTGAGGGTGTTCTGGAGAGACTGAATGTAAGTCAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGTCTGTGAGGGTGTTCTGGAGAGACTGAATGTAAGTCAGAAGA  695

seq1  CCCTAATGACTGTGGGTGGCATGATTCCATGGGCTCGGGGCGCAGTCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATGACTGTGGGTGGCATGATTCCATGGGCTCGGGGCGCAGTCAAG  745

seq1  GTGATAGCAAATGGGGAACCAGCGTACCTCTCTGTTTCCTCACTGGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGCAAATGGGGAACCAGCGTACCTCTCTGTTTCCTCACTGGACAG  795

seq1  AATGTGAGTAGCTGCTCCCATGATGGATTGTACCCTCTAACTGTCAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGTAGCTGCTCCCATGATGGATTGTACCCTCTAACTGTCAACCA  845

seq1  AAATAAACTTTGTTTGCTTCTGTTGGTATTTTGTCATTGCAACAAGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACTTTGTTTGCTTCTGTTGGTATTTTGTCATTGCAACAAGAAAG  895

seq1  TAATGTAACTAGTGCAGAGCAGAGGCCATTGCTGTGATAAACTTGACCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAACTAGTGCAGAGCAGAGGCCATTGCTGTGATAAACTTGACCAT  945

seq1  GTGTTTCTTACAACTGTGGACTGGTTTGTGGAGAGAACAGTTTGCAGCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTTACAACTGTGGACTGGTTTGTGGAGAGAACAGTTTGCAGCTG  995

seq1  TAGGGTAAGACCCTATGTATATAAGTAAAGCTTACTAGGCCATTCTGGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAAGACCCTATGTATATAAGTAAAGCTTACTAGGCCATTCTGGTG  1045

seq1  GGAGTTTGGAATTC  1064
      ||||||||||||||
seq2  GGAGTTTGGAATTC  1059

seq1: chr13_21363418_21363631
seq2: B6Ng01-107M23.g_72_285

seq1  TTGATTCTTAGCTGGTGAGAGACTTTACCCAGACTCCTGGGTTAAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCTTAGCTGGTGAGAGACTTTACCCAGACTCCTGGGTTAAAGTTT  50

seq1  CCTTTTCTTTCTCACGCTCCCTTAGTCTTAGCTTCTCTATCTTGCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTTCTCACGCTCCCTTAGTCTTAGCTTCTCTATCTTGCCTCTC  100

seq1  ATGCAGACTTTGTTAGTTTTCTGAAGTCATGCTTCCATAGACCTGTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACTTTGTTAGTTTTCTGAAGTCATGCTTCCATAGACCTGTTCAC  150

seq1  AGGGTGAGCTTATGGTTTCCTATCTATAAATCACAAGAGTGGAGTAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGCTTATGGTTTCCTATCTATAAATCACAAGAGTGGAGTAGAAG  200

seq1  GGGAGGGGGAGATG  214
      ||||||||||||||
seq2  GGGAGGGGGAGATG  214