BAC Information

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BAC

Clone NameB6Ng01-108B02
Chromosome13 (Build37)
Map Location 6,169,998 - 6,304,371
singlet/doubletdoublet
Overlap geneLOC100039388
Upstream gene1700016G22Rik, Klf6
Downstream geneLOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108B02.bB6Ng01-108B02.g
ACCDH915350DH915351
length1,2331,161
definitionDH915350|Mus musculus domesticus DNA, BAC clone: B6Ng01-108B02, 5' end.DH915351|Mus musculus domesticus DNA, BAC clone: B6Ng01-108B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,303,108 - 6,304,371)(6,169,998 - 6,171,176)
sequence
gaattctactctaaaaagttgaacctatgaaatatctaatagataaataa
cttaaataatatacacagaaaaataattctcagcctatgaacatattcta
caaatgtaatattcaaattttccattttacagacaggtttctgattgaac
aatacttagaataggaattagagaaaaagatctaaatgaatacaagtaca
cgttgcctgtaaccattttttcctgggcaacagaaggattgttttctcat
gacagcacaaggcaagaaaactgtcacagcaaacctaagcagaaatgaat
ctaaatgaaaaactatgaatatattctttatggatacagagaaagaatta
cactgttactttctgaaaattctttagagtaggtctcatggaaatttaat
tttttagatgtgaaaacactagcagtatattactcaaacaattaaagaat
ctcatatcatcgcctacgagattctggattactagaataaattaacatat
ttttaatcaacaagaaatgttatgattgttttaaagaaatctatgttttg
ctgtcaggcacatacattttaaacattacatcttgttgtttcatttctct
tgagagatgaatcctggagcattcagagtaaataaattgttgccaaggaa
aaaaataaggtactgccttttagaattatggttattatgctaattttaat
tatattaaaagattagggaaaaaagcctaaatctgctttacaccttagtt
tcattgtctaaaatcattgttgtttcagagttgtatacattcaatatcct
aaccaccatagtcattcattattggagggacaaagaaagagaaggaagaa
aagttgagattacctctgcaatacattttgtgcaccagagaagaagctgt
gcttgttttttaaaacaacaagcaaacaaacaaacaaacatatcttttat
aaagtaacagagagagaaatgtgggtagcagcttcttcaagcacttgaat
ataccttggttttatgtctcttgagttgtgtgacttggcacatgcacatg
cagctacccggatctactgtattcataagcattgtatgactttcagacaa
aaagaatgttcttactttggggtatacagaattgtttaagttgtacagat
gtgcgagacgacctattctttcagtcattggcttagaaagagtgcatgga
gtctcacttattacctgtgaaagaatcctctcg

gaattctcttgcttgtgcctgcatactgtgtagccaaacccacttcaggc
ctctatcagtattcacgtaaccatttgttctggcttccttcataagggag
cctgcgatacagagaaagtatgccttctacaaactggttaaatcacacag
cactgcagcccagccttgcactgttggattggggacgctattgatttcca
gcatagtagacattcacatacagttcagtttttcagttttctacattcta
gtatcagaggcatcaggagcattcttacaagacctgtcggatgcttgctg
acagtgcaacccaagctggcccaggactcagtctcctcacctattttgaa
ttccaatgtaatgccttcatgctgaatgactctatcctccttgctggagg
gagatgtttttgtgttgtttttcttgataaaatgaggaccaaaatagtag
atgacaacaccacgccctgcagtctgccagccacctataaaagccatatg
ttcattaagttaataaatttgacctaaatctgtttccatacctgtgtgat
aaaatttcgtctacagctgcctctgtgtacagggaacatcaacctaacct
agcctataagtaaactgaaacctgatttaacagtatgttcttgtagttgt
cgggtttctccagagaagcagaattagtggaataaatgtacaccatgtta
ggggtatgctaccctggctcatgcagtagaggttggatagtttagcaagt
agccctgagcttacctgagagcttaaggaactgcttcccctctcacgaag
ctaagcgtctcaggagtcccagtgtgatgctgaagtcctagcatctttcc
tagagcacttctgctcttcagtccatggaaagctgaagaaactagtgttg
atatcagggaaatacggcagcagcagcagactgatgcacacagcagccag
aagcaacacagctttgtcaatggacccgaccagcccaggtgtgggtctct
gccctgagtgattttcccatagggatcatcttagttgatttcagaaggcg
gtcaaatgacagtcatgactacaattcttggatctgtacaggtgggcgaa
tggcacagttatatgccaggtccacatgtaatattccatattaacaccct
gtctgcatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6303108_6304371
seq2: B6Ng01-108B02.b_39_1271 (reverse)

seq1  CGAGAGGATTCTTT--CAGTTAATAGGTGGAGACTTTCCCCATTCACTCT  48
      ||||||||||||||  ||| ||||| || ||||||    |||| ||||||
seq2  CGAGAGGATTCTTTCACAGGTAATAAGT-GAGACT----CCATGCACTCT  45

seq1  TTCCTAAGCCAATATAAACTTGAAAAAGAATAGTTTCCTGTCTTCGCACA  98
      || ||||||||||    |||    ||||||||| |    ||| |||||||
seq2  TT-CTAAGCCAAT---GACT---GAAAGAATAGGT---CGTC-TCGCACA  84

seq1  TCTTGTCCTACTTATACA--TCTGTATACCCCAAAAGTAGACAATTTCCT  146
      || ||| | ||||| |||  |||||||||||||||   |||  |||  ||
seq2  TC-TGTACAACTTAAACAATTCTGTATACCCCAAAGTAAGAACATT--CT  131

seq1  TCTCTGTCTGAAGGTCATACAATGCTTATG-ATACAGGTTAGGATCCGAG  195
      | | |||||||| ||||||||||||||||| ||||||  || |||||| |
seq2  T-TTTGTCTGAAAGTCATACAATGCTTATGAATACAG--TA-GATCCGGG  177

seq1  TAGCTGCATGTGGCATTGTGCCCAAGTTCACACAACTCAAGAGACCAATT  245
      ||||||||||| ||| |||| ||||| ||||||||||||||||||  || 
seq2  TAGCTGCATGT-GCA-TGTG-CCAAG-TCACACAACTCAAGAGAC--AT-  220

seq1  AAAAACCAAAGGTATATTCAAGTGCTTGGAAGAAGCTGGCTTACCCACAT  295
       |||||| ||||||||||||||||||| ||||||||||   |||||||||
seq2  -AAAACC-AAGGTATATTCAAGTGCTT-GAAGAAGCTG--CTACCCACAT  265

seq1  TTCTCTCTCTGTTACTTTATAAAAGATATGTTTGTTTGTTTGTTTGCTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTGTTACTTTATAAAAGATATGTTTGTTTGTTTGTTTGCTTG  315

seq1  TTTGTTTTAAAAAACAAGCACAGCTTCTTCTCTGGTGCACAAAATGTATT  395
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGTTTTAAAAAACAAGCACAGCTTCTTCTCTGGTGCACAAAATGTATT  364

seq1  GCAGAGGTAATCTCAACTTTTCTTCCTTCTCTTTCTTTGTCCCTCCAATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTAATCTCAACTTTTCTTCCTTCTCTTTCTTTGTCCCTCCAATA  414

seq1  ATGAATGACTATGGTGGTTAGGATATTGAATGTATACAACTCTGAAACAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGACTATGGTGGTTAGGATATTGAATGTATACAACTCTGAAACAA  464

seq1  CAATGATTTTAGACAATGAAACTAAGGTGTAAAGCAGATTTAGGCTTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATTTTAGACAATGAAACTAAGGTGTAAAGCAGATTTAGGCTTTTT  514

seq1  TCCCTAATCTTTTAATATAATTAAAATTAGCATAATAACCATAATTCTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAATCTTTTAATATAATTAAAATTAGCATAATAACCATAATTCTAA  564

seq1  AAGGCAGTACCTTATTTTTTTCCTTGGCAACAATTTATTTACTCTGAATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTACCTTATTTTTTTCCTTGGCAACAATTTATTTACTCTGAATG  614

seq1  CTCCAGGATTCATCTCTCAAGAGAAATGAAACAACAAGATGTAATGTTTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGATTCATCTCTCAAGAGAAATGAAACAACAAGATGTAATGTTTA  664

seq1  AAATGTATGTGCCTGACAGCAAAACATAGATTTCTTTAAAACAATCATAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATGTGCCTGACAGCAAAACATAGATTTCTTTAAAACAATCATAA  714

seq1  CATTTCTTGTTGATTAAAAATATGTTAATTTATTCTAGTAATCCAGAATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTGTTGATTAAAAATATGTTAATTTATTCTAGTAATCCAGAATC  764

seq1  TCGTAGGCGATGATATGAGATTCTTTAATTGTTTGAGTAATATACTGCTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGGCGATGATATGAGATTCTTTAATTGTTTGAGTAATATACTGCTA  814

seq1  GTGTTTTCACATCTAAAAAATTAAATTTCCATGAGACCTACTCTAAAGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCACATCTAAAAAATTAAATTTCCATGAGACCTACTCTAAAGAA  864

seq1  TTTTCAGAAAGTAACAGTGTAATTCTTTCTCTGTATCCATAAAGAATATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAAAGTAACAGTGTAATTCTTTCTCTGTATCCATAAAGAATATA  914

seq1  TTCATAGTTTTTCATTTAGATTCATTTCTGCTTAGGTTTGCTGTGACAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTTTTTCATTTAGATTCATTTCTGCTTAGGTTTGCTGTGACAGT  964

seq1  TTTCTTGCCTTGTGCTGTCATGAGAAAACAATCCTTCTGTTGCCCAGGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCCTTGTGCTGTCATGAGAAAACAATCCTTCTGTTGCCCAGGAA  1014

seq1  AAAATGGTTACAGGCAACGTGTACTTGTATTCATTTAGATCTTTTTCTCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTTACAGGCAACGTGTACTTGTATTCATTTAGATCTTTTTCTCT  1064

seq1  AATTCCTATTCTAAGTATTGTTCAATCAGAAACCTGTCTGTAAAATGGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTATTCTAAGTATTGTTCAATCAGAAACCTGTCTGTAAAATGGAA  1114

seq1  AATTTGAATATTACATTTGTAGAATATGTTCATAGGCTGAGAATTATTTT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAATATTACATTTGTAGAATATGTTCATAGGCTGAGAATTATTTT  1164

seq1  TCTGTGTATATTATTTAAGTTATTTATCTATTAGATATTTCATAGGTTCA  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTATATTATTTAAGTTATTTATCTATTAGATATTTCATAGGTTCA  1214

seq1  ACTTTTTAGAGTAGAATTC  1264
      |||||||||||||||||||
seq2  ACTTTTTAGAGTAGAATTC  1233


seq1: chr13_6169998_6171176
seq2: B6Ng01-108B02.g_69_1229

seq1  GAATTCTCTTGCTTGTGCCTGCATACTGTGTAGCCAAACCCACTTCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGCTTGTGCCTGCATACTGTGTAGCCAAACCCACTTCAGGC  50

seq1  CTCTATCAGTATTCACGTAACCATTTGTTCTGGCTTCCTTCATAAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCAGTATTCACGTAACCATTTGTTCTGGCTTCCTTCATAAGGGAG  100

seq1  CCTGCGATACAGAGAAAGTATGCCTTCTACAAACTGGTTAAATCACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGATACAGAGAAAGTATGCCTTCTACAAACTGGTTAAATCACACAG  150

seq1  CACTGCAGCCCAGCCTTGCACTGTTGGATTGGGGACGCTATTGATTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGCCCAGCCTTGCACTGTTGGATTGGGGACGCTATTGATTTCCA  200

seq1  GCATAGTAGACATTCACATACAGTTCAGTTTTTCAGTTTTCTACATTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTAGACATTCACATACAGTTCAGTTTTTCAGTTTTCTACATTCTA  250

seq1  GTATCAGAGGCATCAGGAGCATTCTTACAAGACCTGTCGGATGCTTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAGGCATCAGGAGCATTCTTACAAGACCTGTCGGATGCTTGCTG  300

seq1  ACAGTGCAACCCAAGCTGGCCCAGGACTCAGTCTCCTCACCTATTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCAACCCAAGCTGGCCCAGGACTCAGTCTCCTCACCTATTTTGAA  350

seq1  TTCCAATGTAATGCCTTCATGCTGAATGACTCTATCCTCCTTGCTGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGTAATGCCTTCATGCTGAATGACTCTATCCTCCTTGCTGGAGG  400

seq1  GAGATGTTTTTGTGTTGTTTTTCTTGATAAAATGAGGACCAAAATAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTTTTGTGTTGTTTTTCTTGATAAAATGAGGACCAAAATAGTAG  450

seq1  ATGACAACACCACGCCCTGCAGTCTGCCAGCCACCTATAAAAGCCATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAACACCACGCCCTGCAGTCTGCCAGCCACCTATAAAAGCCATATG  500

seq1  TTCATTAAGTTAATAAATTTGACCTAAATCTGTTTCCATACCTGTGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAGTTAATAAATTTGACCTAAATCTGTTTCCATACCTGTGTGAT  550

seq1  AAAATTTCGTCTACAGCTGCCTCTGTGTACAGGGAACATCAACCTAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCGTCTACAGCTGCCTCTGTGTACAGGGAACATCAACCTAACCT  600

seq1  AGCCTATAAGTAAACTGAAACCTGATTTAACAGTATGTTCTTGTAGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATAAGTAAACTGAAACCTGATTTAACAGTATGTTCTTGTAGTTGT  650

seq1  CGGGTTTCTCCAGAGAAGCAGAATTAGTGGAATAAATGTACACCATGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTCTCCAGAGAAGCAGAATTAGTGGAATAAATGTACACCATGTTA  700

seq1  GGGGTATGCTACCCTGGCTCATGCAGTAGAGGTTGGATAGTTTAGCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATGCTACCCTGGCTCATGCAGTAGAGGTTGGATAGTTTAGCAAGT  750

seq1  AGCCCTGAGCTTACCTGAGAGCTTAAGGAACTGCTTCCCCTCTCACGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAGCTTACCTGAGAGCTTAAGGAACTGCTTCCCCTCTCACGAAG  800

seq1  CTAAGCGTCTCAGGAGTCCCAGTGTGATGCTGAAGTCCTAGCATC-TTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTAAGCGTCTCAGGAGTCCCAGTGTGATGCTGAAGTCCTAGCATCTTTCC  850

seq1  TAGAGCACTTCTGCTCTTCAGTCCATGGAAAGCTGAAGAAACTAGGTGTT  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGAGCACTTCTGCTCTTCAGTCCATGGAAAGCTGAAGAAACTA-GTGTT  899

seq1  GATATCAGGGAAATACGGCAGCAGCAGCAGAACTGATGCACACAGCAGCC  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GATATCAGGGAAATACGGCAGCAGCAGCAG-ACTGATGCACACAGCAGCC  948

seq1  AGAAGCAAACACAGCTTTTGTCAATGGACCCGACCAGCCCAGGTGTGGGT  999
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAAGC-AACACAGC-TTTGTCAATGGACCCGACCAGCCCAGGTGTGGGT  996

seq1  CTCTGCCCCTGGAAGTGATTTTTCCCATAGGAATCAATCTTAGTTGATTC  1049
      ||||| |||||  ||||| |||||||||||| ||| ||||||||||||| 
seq2  CTCTG-CCCTG--AGTGA-TTTTCCCATAGGGATC-ATCTTAGTTGATTT  1041

seq1  CAG-AGGCAGTCAAGTTGACAGTCATGACTTACCATTCTTGATTCTGTAA  1098
      ||| |||| |||||  ||||||||||||| ||| |||||||  ||||| |
seq2  CAGAAGGCGGTCAA-ATGACAGTCATGAC-TACAATTCTTGGATCTGT-A  1088

seq1  CAAGTGGCTGAATTGCAACCAGTTATAGTCCATGTCCACACATGTTAAAT  1148
      || ||||  |||| |||  ||||||||  ||| |||  |||||||  |||
seq2  CAGGTGGGCGAATGGCA--CAGTTATATGCCAGGTC--CACATGT--AAT  1132

seq1  ATCTCATTATTTAACACCATGTCTGCATGTT  1179
      ||  |||   |||||||| ||||||||||||
seq2  ATTCCAT--ATTAACACCCTGTCTGCATGTT  1161


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