BAC Information

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BAC

Clone NameB6Ng01-108E04
Chromosome13 (Build37)
Map Location 59,385,229 - 59,499,704
singlet/doubletdoublet
Overlap genenone
Upstream geneKif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533
Downstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108E04.bB6Ng01-108E04.g
ACCDH915491DH915492
length7611,149
definitionDH915491|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E04, 5' end.DH915492|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,385,229 - 59,385,988)(59,498,529 - 59,499,704)
sequence
gaattcccactatctaattcaacaatcaggctagccattcctgggcctgg
agaggctgctcggcagttaaaagcacctgctgttcttgaagatgaccaga
attctgttcccggtacgcatactggacagctcataacctcttgtaactta
agctccaggggaattcaacatgatcttttggcctctgtgggtgcacacgc
aaacacacacacacacacacacacacacaatttttaaaaataattcttta
aaaagattccacaaagtatggccagtctggcctcgtgggtagcaaaggaa
gacctgcccagagacaaggaaggagataacatatgtgctccacgctgaaa
gcagcagtcccctctggtcacgtgagaagcaatatcccatctagtgtttc
tcagccactgctagctcttagcctcaaatattttatccatctgaacagtt
cttggaggtgcataggccagaccagcatgagacaattgccaggaggttaa
gaaaaaccaccatcctacagtgcggctggttacttaagggccattttcaa
catctttggtttagagaatatcagaactgcagtcacacatttacaaaagg
aatttctgaaatatcagtgggccaggagctgactgaacacaggtctttgt
gcttttggttgcatggaggagttgtcctcatgcccctgaagaatcattgc
tagagtataaaatcaagattcaaagcccttctgggtccatgtcacctgtt
gttggccctac
gaattcagggggttcgtttacctattttatctattttgcaagttaagctg
tgggacacagctggaagaaggaagcgatttatttgtgatcgatactggct
gctttaaataatccaatgtgttttgaaatctgttttatttaatttaaatt
tctcaagagttctttaaaaaaaaaaaaccctaccagaatttctttccaaa
gaacttttccaaatggctccaatccctccagctctacccaactcttgtct
gtattctacaatttagtcttgcttccttcttaaatagacctgggggaggg
gaagaggccctattcccagctttttagattggaatggtttttcctctcct
ggtttgaattttaaggctcataaaatgcagttgtcatttcctgtgggcat
ccctcatttgcaccttctttttgtaattaatcacccctgacacaagttca
caataagctatgtgttggcctgagctactgattgatatcttgccttgtta
gggtcaaggaattgggctactgttaggatacccttgttaggcacttggaa
actaaatgtgaatggccaccaggggacgccaggctcccagggtcttgtct
gggtcttcatttgagcagtgaaagagctggggaacattcgtcagcatcct
cctttctctggggcctcacaggtaaggagttttgtgacacttgaaattca
gggtcttcggcccccagttgagggatggggccacccacccatctcaaaaa
ttttaacccagaattgttcctatctaaaggaaatgcagagacaaaaatgg
agcagagactgaaggaaaggccatttcaagactgccccacctagggatcc
atcccatctgcagacactgaacccagacatattggtggatgctaagaagt
gtttgctgccaggagcctggtaatgctgtccctgagaggctctttcagca
cctgacatatacagatgcagatactcacagccaaccattgactgagcctg
ggaccctaatggaaagctagggaaggatgaaggagctgccatggaagatg
acatatgactatctgacacccaagctccaggactaaccccaccaagagta
ctgtgaggacctggctcctctgactttgtagcatagatatgaccttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_59385229_59385988
seq2: B6Ng01-108E04.b_43_803

seq1  GAATTCCCACTATCTAATTCAACAATCAGGCTAGCCATTCCTGGGCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTATCTAATTCAACAATCAGGCTAGCCATTCCTGGGCCTGG  50

seq1  AGAGGCTGCTCGGCAGTTAAAAGCACCTGCTGTTCTTGAAGATGACCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGCTCGGCAGTTAAAAGCACCTGCTGTTCTTGAAGATGACCAGA  100

seq1  ATTCTGTTCCCGGTACGCATACTGGACAGCTCATAACCTCTTGTAACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTCCCGGTACGCATACTGGACAGCTCATAACCTCTTGTAACTTA  150

seq1  AGCTCCAGGGGAATTCAACATGATCTTTTGGCCTCTGTGGGTGCACACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGGGAATTCAACATGATCTTTTGGCCTCTGTGGGTGCACACGC  200

seq1  AAACACACACACACACACACACACACACAATTTTTAAAAATAATTCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACACACACACACACACACACACAATTTTTAAAAATAATTCTTTA  250

seq1  AAAAGATTCCACAAAGTATGGCCAGTCTGGCCTCGTGGGTAGCAAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTCCACAAAGTATGGCCAGTCTGGCCTCGTGGGTAGCAAAGGAA  300

seq1  GACCTGCCCAGAGACAAGGAAGGAGATAACATATGTGCTCCACGCTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCCAGAGACAAGGAAGGAGATAACATATGTGCTCCACGCTGAAA  350

seq1  GCAGCAGTCCCCTCTGGTCACGTGAGAAGCAATATCCCATCTAGTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTCCCCTCTGGTCACGTGAGAAGCAATATCCCATCTAGTGTTTC  400

seq1  TCAGCCACTGCTAGCTCTTAGCCTCAAATATTTTATCCATCTGAACAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACTGCTAGCTCTTAGCCTCAAATATTTTATCCATCTGAACAGTT  450

seq1  CTTGGAGGTGCATAGGCCAGACCAGCATGAGACAATTGCCAGGAGGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGTGCATAGGCCAGACCAGCATGAGACAATTGCCAGGAGGTTAA  500

seq1  GAAAAACCACCATCCTACAGTGCGGCTGGTTACTTAAGGGCCATTTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCACCATCCTACAGTGCGGCTGGTTACTTAAGGGCCATTTTCAA  550

seq1  CATCTTTGGTTTAGAGAATATCAGAACTGCAGTCACACATTTACAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGGTTTAGAGAATATCAGAACTGCAGTCACACATTTACAAAAGG  600

seq1  AATTTCTGAAATATCAGTGGGCCAGGAGCTGACTGAACACAGGTCTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGAAATATCAGTGGGCCAGGAGCTGACTGAACACAGGTCTTTGT  650

seq1  GCTTTTGGTTGCATGGAGGAGTTGTCCTCATGCCCCTGAAGAATCATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGTTGCATGGAGGAGTTGTCCTCATGCCCCTGAAGAATCATTGC  700

seq1  TAGAGTAT-AAATCAAGATTCAAAGCCCTTCTGGGTCCATGTCACCTGTT  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTATAAAATCAAGATTCAAAGCCCTTCTGGGTCCATGTCACCTGTT  750

seq1  GTTGGCCCTAC  760
      |||||||||||
seq2  GTTGGCCCTAC  761

seq1: chr13_59498529_59499704
seq2: B6Ng01-108E04.g_68_1216 (reverse)

seq1  AATAAGGTCAT-CCTCTGCTACATATGCAGCTGGAGCCAGGGCTCCCTCC  49
      |||||||||||  || ||||||| |  |||  |||||||||  |||   |
seq2  AATAAGGTCATATCTATGCTACAAAGTCAG-AGGAGCCAGG--TCCTCAC  47

seq1  ATGTGTACTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGTGGTCA  99
      |   |||||| |||||    || |||||||   |||||| ||||| ||||
seq2  A---GTACTC-TTGGT---GGGGTTAGTCC--TGGAGCT-TGGGT-GTCA  86

seq1  TGTTAGTCGATATTGTCATTCTTCCTATGGGGCAGCTCCTTCATTCCTTC  149
       | ||||| ||| ||||| |||||| ||  ||||||||||||| ||||| 
seq2  -GATAGTC-ATA-TGTCA-TCTTCC-AT--GGCAGCTCCTTCA-TCCTT-  127

seq1  CCCTAGCTCTCCCATTGGGTGTCCCCAGGCTCAGTCCAATGGTTGGCTGT  199
      |||||||| |||  | ||||   |||||||||||| ||||||||||||||
seq2  CCCTAGCTTTCCATTAGGGT---CCCAGGCTCAGT-CAATGGTTGGCTGT  173

seq1  GAGTATCTGCATCTGTATTGGTCAGGTGCTGAAAGAGCCTCTCAGGGGAC  249
      ||||||||||||||||||  |||||||||||||||||||||||| |||||
seq2  GAGTATCTGCATCTGTATATGTCAGGTGCTGAAAGAGCCTCTCA-GGGAC  222

seq1  AGCCATACCAGGCTCCTGGCAGCAAACACTTCTTAGCAT-CACCAATAGT  298
      |||  |||||||||||||||||||||||||||||||||| |||||||| |
seq2  AGCATTACCAGGCTCCTGGCAGCAAACACTTCTTAGCATCCACCAATA-T  271

seq1  GTCTGGGTTCAGTGTCTGCAGATGGGATGGATCCCTAGGTGGGGCAGTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGTTCAGTGTCTGCAGATGGGATGGATCCCTAGGTGGGGCAGTCT  321

seq1  TGAAATGGCCTTTCCTTCAGTCTCTGCTCCATTTTTGTCTCTGCATTTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGCCTTTCCTTCAGTCTCTGCTCCATTTTTGTCTCTGCATTTCC  371

seq1  TTTAGATAGGAACAATTCTGGGTTAAAATTTTTGAGATGGGTGGGTGGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATAGGAACAATTCTGGGTTAAAATTTTTGAGATGGGTGGGTGGCC  421

seq1  CCATCCCTCAACTGGGGGCCGAAGACCCTGAATTTCAAGTGTCACAAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTCAACTGGGGGCCGAAGACCCTGAATTTCAAGTGTCACAAAAC  471

seq1  TCCTTACCTGTGAGGCCCCAGAGAAAGGAGGATGCTGACGAATGTTCCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACCTGTGAGGCCCCAGAGAAAGGAGGATGCTGACGAATGTTCCCC  521

seq1  AGCTCTTTCACTGCTCAAATGAAGACCCAGACAAGACCCTGGGAGCCTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTCACTGCTCAAATGAAGACCCAGACAAGACCCTGGGAGCCTGG  571

seq1  CGTCCCCTGGTGGCCATTCACATTTAGTTTCCAAGTGCCTAACAAGGGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCCTGGTGGCCATTCACATTTAGTTTCCAAGTGCCTAACAAGGGTA  621

seq1  TCCTAACAGTAGCCCAATTCCTTGACCCTAACAAGGCAAGATATCAATCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACAGTAGCCCAATTCCTTGACCCTAACAAGGCAAGATATCAATCA  671

seq1  GTAGCTCAGGCCAACACATAGCTTATTGTGAACTTGTGTCAGGGGTGATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCAGGCCAACACATAGCTTATTGTGAACTTGTGTCAGGGGTGATT  721

seq1  AATTACAAAAAGAAGGTGCAAATGAGGGATGCCCACAGGAAATGACAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAAAAGAAGGTGCAAATGAGGGATGCCCACAGGAAATGACAACT  771

seq1  GCATTTTATGAGCCTTAAAATTCAAACCAGGAGAGGAAAAACCATTCCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTATGAGCCTTAAAATTCAAACCAGGAGAGGAAAAACCATTCCAA  821

seq1  TCTAAAAAGCTGGGAATAGGGCCTCTTCCCCTCCCCCAGGTCTATTTAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAGCTGGGAATAGGGCCTCTTCCCCTCCCCCAGGTCTATTTAAG  871

seq1  AAGGAAGCAAGACTAAATTGTAGAATACAGACAAGAGTTGGGTAGAGCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGCAAGACTAAATTGTAGAATACAGACAAGAGTTGGGTAGAGCTG  921

seq1  GAGGGATTGGAGCCATTTGGAAAAGTTCTTTGGAAAGAAATTCTGGTAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATTGGAGCCATTTGGAAAAGTTCTTTGGAAAGAAATTCTGGTAGG  971

seq1  GTTTTTTTTTTTTAAAGAACTCTTGAGAAATTTAAATTAAATAAAACAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTAAAGAACTCTTGAGAAATTTAAATTAAATAAAACAGA  1021

seq1  TTTCAAAACACATTGGATTATTTAAAGCAGCCAGTATCGATCACAAATAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAACACATTGGATTATTTAAAGCAGCCAGTATCGATCACAAATAA  1071

seq1  ATCGCTTCCTTCTTCCAGCTGTGTCCCACAGCTTAACTTGCAAAATAGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTTCCTTCTTCCAGCTGTGTCCCACAGCTTAACTTGCAAAATAGAT  1121

seq1  AAAATAGGTAAACGAACCCCCTGAATTC  1176
      ||||||||||||||||||||||||||||
seq2  AAAATAGGTAAACGAACCCCCTGAATTC  1149