BAC Information

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BAC

Clone NameB6Ng01-108I09
Chromosome13 (Build37)
Map Location 115,342,757 - 115,512,831
singlet/doubletdoublet
Overlap gene4930467J12Rik
Upstream geneSnag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst
Downstream geneMocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108I09.bB6Ng01-108I09.g
ACCDH915688DH915689
length5271,193
definitionDH915688|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I09, 5' end.DH915689|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,512,299 - 115,512,831)(115,342,757 - 115,343,964)
sequence
ttaaggctttgaggcccatacctgtacagttcctgatagagggattatga
aaatctcatttttgtggtcttttattcttgaaagtgacggatcatctctt
tggcctaaagctttcgtccttctctccttaaggctcctgttgattcgcat
atgtgcctattacctggataccataaaagagatgagtacttcacatcact
atctagagttgaaaacagtagtgcttagaaattcaatgtttccaggtagt
gtcctcagtgtgctgtgactagtatatcccagactcacttatacgtttcc
tgctttagtgtccattataataaagttagaactaggtattgggtgcattc
ctatagtatcaagcacatagaggattgaagcaggggggtgggcagattgc
tgttaggtgaaggccagcctggactacacagtgaataccaagtgagtcag
tgctatatagtgtcaatcaataaatctgacgagtctccatagggatgagt
gtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattccttggcactcttggagggagcaggaagcttgggcagcaggacac
tcaccaaaggactcactatttctttttggttttaaaaataaaacattctt
acaaagtaagcctctggcttccaaaccacagcatttctgaagctggggtt
ttcaggaaaccgctggatttctgaatgagatgttgttaagtctccccgtt
gttttcaacggtcgtgtgctttttcagaacactctgatgtctattagggg
agccgttgcatgcaaggactagtgaagacgctaatgcagaatgaaaggca
agggatgcatctcttctttatttgggtttcaggcctttcctttgatacaa
tgggggactaaataagatccataagtgttctgtcgactctttcagaagta
tctgtctgagtttcttttcctgtggctagataaaacaggctgacaaaatg
aataatgcttttttccccctcagttttctttcttctttttgtacaggatc
tcagcccagggaatggttccactcacagtggatgacaggtcgtcccattt
caaacaaccccgggcaagatcatgctccacagaactgcctagagaccctt
cctacatgtgattctagatcttttcaagaggacagctgacattcatcatg
gcagtatcctattgcagaccatcatgtggatggaaagctttggtctttgg
tgtagataattccacagaatgcttatatttcatgcctaggtcatgaaaaa
gaaaaaaaaaatctagtaactttccttaactgaaaattctggagacactc
aatcaggtaggctgagccaattgctttaacaggtgcaccctgagataaat
atggcgtaattatgtttatttattctccttataccagtggcagctagaga
aaagtataaatgacagctttattttaacacagtcactcaaaaatctactt
gttgaagattgcaaacttgagtttcaggtcccaaggactgtctagaagac
ttgggacacgggacatggctgtaacatttcccattcttttgtaggtcaaa
atctaacttaggtgcttcagttgatgaaggtctgaaaagtacaactttag
ctggtacaatcctttcaaagttcctctgtgtcaggacatgattgttgggc
ttcacaacacgctgtcctatcttctcttgagcactttagtcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115512299_115512831
seq2: B6Ng01-108I09.b_50_582 (reverse)

seq1  CACACACACACACACACACACACACACACTCATCCCTATGGAGACTCGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACTCATCCCTATGGAGACTCGTC  50

seq1  AGATTTATTGATTGACACTATATAGCACTGACTCACTTGGTATTCACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTGATTGACACTATATAGCACTGACTCACTTGGTATTCACTGT  100

seq1  GTAGTCCAGGCTGGCCTTCACCTAACAGCAATCTGCCCACCCCCCTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCAGGCTGGCCTTCACCTAACAGCAATCTGCCCACCCCCCTGCTT  150

seq1  CAATCCTCTATGTGCTTGATACTATAGGAATGCACCCAATACCTAGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCTATGTGCTTGATACTATAGGAATGCACCCAATACCTAGTTCT  200

seq1  AACTTTATTATAATGGACACTAAAGCAGGAAACGTATAAGTGAGTCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATTATAATGGACACTAAAGCAGGAAACGTATAAGTGAGTCTGGG  250

seq1  ATATACTAGTCACAGCACACTGAGGACACTACCTGGAAACATTGAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTAGTCACAGCACACTGAGGACACTACCTGGAAACATTGAATTTC  300

seq1  TAAGCACTACTGTTTTCAACTCTAGATAGTGATGTGAAGTACTCATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTACTGTTTTCAACTCTAGATAGTGATGTGAAGTACTCATCTCT  350

seq1  TTTATGGTATCCAGGTAATAGGCACATATGCGAATCAACAGGAGCCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTATCCAGGTAATAGGCACATATGCGAATCAACAGGAGCCTTAA  400

seq1  GGAGAGAAGGACGAAAGCTTTAGGCCAAAGAGATGATCCGTCACTTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGGACGAAAGCTTTAGGCCAAAGAGATGATCCGTCACTTTCAA  450

seq1  GAATAAAAGACCACAAAAATGAGATTTTCATAATCCCTCTATCAGGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAGACCACAAAAATGAGATTTTCATAATCCCTCTATCAGGAACT  500

seq1  GTACAGGTATGGGCCTCAAAGCCTTAAGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  GTACAGGTATGGGCCTCAAAGCCTTAAGAATTC  533

seq1: chr13_115342757_115343964
seq2: B6Ng01-108I09.g_69_1261

seq1  GAATTCCTTGGCACTCTTGGAGGGAGCAGGAAGCTTGGGCAGCAGGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGCACTCTTGGAGGGAGCAGGAAGCTTGGGCAGCAGGACAC  50

seq1  TCACCAAAGGACTCACTATTTCTTTTTGGTTTTAAAAATAAAACATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAAGGACTCACTATTTCTTTTTGGTTTTAAAAATAAAACATTCTT  100

seq1  ACAAAGTAAGCCTCTGGCTTCCAAACCACAGCATTTCTGAAGCTGGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAAGCCTCTGGCTTCCAAACCACAGCATTTCTGAAGCTGGGGTT  150

seq1  TTCAGGAAACCGCTGGATTTCTGAATGAGATGTTGTTAAGTCTCCCCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAACCGCTGGATTTCTGAATGAGATGTTGTTAAGTCTCCCCGTT  200

seq1  GTTTTCAACGGTCGTGTGCTTTTTCAGAACACTCTGATGTCTATTAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAACGGTCGTGTGCTTTTTCAGAACACTCTGATGTCTATTAGGGG  250

seq1  AGCCGTTGCATGCAAGGACTAGTGAAGACGCTAATGCAGAATGAAAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTTGCATGCAAGGACTAGTGAAGACGCTAATGCAGAATGAAAGGCA  300

seq1  AGGGATGCATCTCTTCTTTATTTGGGTTTCAGGCCTTTCCTTTGATACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGCATCTCTTCTTTATTTGGGTTTCAGGCCTTTCCTTTGATACAA  350

seq1  TGGGGGACTAAATAAGATCCATAAGTGTTCTGTCGACTCTTTCAGAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACTAAATAAGATCCATAAGTGTTCTGTCGACTCTTTCAGAAGTA  400

seq1  TCTGTCTGAGTTTCTTTTCCTGTGGCTAGATAAAACAGGCTGACAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGAGTTTCTTTTCCTGTGGCTAGATAAAACAGGCTGACAAAATG  450

seq1  AATAATGCTTTTTTCCCCCTCAGTTTTCTTTCTTCTTTTTGTACAGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCTTTTTTCCCCCTCAGTTTTCTTTCTTCTTTTTGTACAGGATC  500

seq1  TCAGCCCAGGGAATGGTTCCACTCACAGTGGATGACAGGTCGTCCCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCAGGGAATGGTTCCACTCACAGTGGATGACAGGTCGTCCCATTT  550

seq1  CAAACAACCCCGGGCAAGATCATGCTCCACAGAACTGCCTAGAGACCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACCCCGGGCAAGATCATGCTCCACAGAACTGCCTAGAGACCCTT  600

seq1  CCTACATGTGATTCTAGATCTTTTCAAGAGGACAGCTGACATTCATCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATGTGATTCTAGATCTTTTCAAGAGGACAGCTGACATTCATCATG  650

seq1  GCAGTATCCTATTGCAGACCATCATGTGGATGGAAAGCTTTGGTCTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATCCTATTGCAGACCATCATGTGGATGGAAAGCTTTGGTCTTTGG  700

seq1  TGTAGATAATTCCACAGAATGCTTATATTTCATGCCTAGGTCATGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATAATTCCACAGAATGCTTATATTTCATGCCTAGGTCATGAAAAA  750

seq1  GAAAAAAAAAATCTAGTAACTTTCCTTAACTGAAAATTCTGGAGACACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAATCTAGTAACTTTCCTTAACTGAAAATTCTGGAGACACTC  800

seq1  AATCAGTTAGGCTGAGCCAATTGCTTTAACAGGTGCACCCTGAGATAAAT  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGTAGGCTGAGCCAATTGCTTTAACAGGTGCACCCTGAGATAAAT  850

seq1  ATGGCGTAAATATGTTTATTTATTCCCCTTATACCAGTGGCAGCTAGAGA  900
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  ATGGCGTAATTATGTTTATTTATTCTCCTTATACCAGTGGCAGCTAGAGA  900

seq1  AAAGTATAAATGACAGCTTTATTTTAACACAGTCACTCAAAAATCTACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATAAATGACAGCTTTATTTTAACACAGTCACTCAAAAATCTACTT  950

seq1  GTTGGAGGATTGCAAACTTGAGTCTCAAGGTCCCAAGGACTGTCTAAGAA  1000
      ||| || |||||||||||||||| || |||||||||||||||||| ||||
seq2  GTT-GAAGATTGCAAACTTGAGTTTC-AGGTCCCAAGGACTGTCT-AGAA  997

seq1  GACATGGGACACGGGACATGGCTGTAACATTTCCACATTCTTTTTGTAGG  1050
      ||| |||||||||||||||||||||||||||||| ||||| |||||||||
seq2  GACTTGGGACACGGGACATGGCTGTAACATTTCC-CATTC-TTTTGTAGG  1045

seq1  TCAGAAGCTAACTATGTGGCTTCAGTTGACAGAAAGGGCCTGAAGAGTAC  1100
      ||| || ||||||  |  |||||||||||  |||  || ||||| |||||
seq2  TCAAAATCTAACTTAGGTGCTTCAGTTGA-TGAA--GGTCTGAAAAGTAC  1092

seq1  AGACCTTAGCTGG-ACAATCACTCTCAAAGGTTCTCTGTGTCAAGGACAT  1149
      | || |||||||| |||||| || |||||| | ||||||||| |||||||
seq2  A-ACTTTAGCTGGTACAATC-CTTTCAAAGTTCCTCTGTGTC-AGGACAT  1139

seq1  GAAATTTTGGTGGGCTGCCAACCACCGCTG-CCTTACTTCTCTTAAGACA  1198
      ||    ||| |||||| |  | || ||||| |||  |||||||| || ||
seq2  GA----TTGTTGGGCTTCACAACA-CGCTGTCCTATCTTCTCTTGAG-CA  1183

seq1  CTTTAGTCAG  1208
      |||||||| |
seq2  CTTTAGTCGG  1193