BAC Information

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BAC

Clone NameB6Ng01-108N03
Chromosome13 (Build37)
Map Location 52,978,873 - 53,120,282
singlet/doubletdoublet
Overlap geneAuh, Nfil3
Upstream geneLOC100040321, Diras2, LOC100040572, Syk
Downstream geneRor2, Sptlc1, LOC100040421, Msx2, EG432760, E130119H09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108N03.bB6Ng01-108N03.g
ACCDH915903DH915904
length426198
definitionDH915903|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N03, 5' end.DH915904|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,978,873 - 52,979,304)(53,120,085 - 53,120,282)
sequence
aatcaaatcttcagtggtctactgtgacaggcccccaaagaacctagtgc
atgagagaaaactgtgatttctcagccttcggcttgcactgcctccctgt
ctcggaacagtcagtctgtccacagttacccacacagctgctctcacaca
aacactccagctcctactgagctcacagagcgcttcatgtacaagacaca
gtggatacccagatcagcgctgcccaccaccagggccgactacagctact
aatccggcagatgcgtcccttccactgctgctgccggtctcctaaggtgg
ctgtgataaatcaccacagacagtgctaaacaacagaaaggggttctctc
acagttctgagacagaactatcaaatgtgcgccaagctcactgggcatgg
cggctcccatctgtgggggggggggg
tcctccaaattctctttggctaaggagggtcacaggggccagatccgagg
ggaggagcttctttgtgctccccatagctctgctgaggtctcctgtgaag
ggtgttgaacctaaggctgctgacttccatgctcagtgttgatgctccct
cttaccgtggcaggagagtagagaccggggtggggtgaggtggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_52978873_52979304
seq2: B6Ng01-108N03.b_46_477

seq1  GAATTCAATCAAATCTTCAGTGGTCTACTGTGACAGGCCCCCAAAGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCAAATCTTCAGTGGTCTACTGTGACAGGCCCCCAAAGAACC  50

seq1  TAGTGCATGAGAGAAAACTGTGATTTCTCAGCCTTCGGCTTGCACTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCATGAGAGAAAACTGTGATTTCTCAGCCTTCGGCTTGCACTGCCT  100

seq1  CCCTGTCTCGGAACAGTCAGTCTGTCCACAGTTACCCACACAGCTGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCGGAACAGTCAGTCTGTCCACAGTTACCCACACAGCTGCTCT  150

seq1  CACACAAACACTCCAGCTCCTACTGAGCTCACAGAGCGCTTCATGTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACACTCCAGCTCCTACTGAGCTCACAGAGCGCTTCATGTACAA  200

seq1  GACACAGTGGATACCCAGATCAGCGCTGCCCACCACCAGGGCCGACTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTGGATACCCAGATCAGCGCTGCCCACCACCAGGGCCGACTACA  250

seq1  GCTACTAATCCGGCAGATGCGTCCCTTCCACTGCTGCTGCCGGTCTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTAATCCGGCAGATGCGTCCCTTCCACTGCTGCTGCCGGTCTCCTA  300

seq1  AGGTGGCTGTGATAAATCACCACAGACAGTGCTAAACAACAGAAAGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTGTGATAAATCACCACAGACAGTGCTAAACAACAGAAAGGGGT  350

seq1  TCTCTCACAGTTCTGAGACAGAACTATCAAATGTGCGCCAAGCTCACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACAGTTCTGAGACAGAACTATCAAATGTGCGCCAAGCTCACTGG  400

seq1  GCATGGCGGCTCCCATCTGTGGGGGGGGGGGG  432
      ||||||||||||||||||||||||||||||||
seq2  GCATGGCGGCTCCCATCTGTGGGGGGGGGGGG  432

seq1: chr13_53120085_53120282
seq2: B6Ng01-108N03.g_73_270 (reverse)

seq1  CCACCCCACCTCACCCCACCCCGGTCTCTACTCTCCTGCCACGGTAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCTCACCCCACCCCGGTCTCTACTCTCCTGCCACGGTAAGAG  50

seq1  GGAGCATCAACACTGAGCATGGAAGTCAGCAGCCTTAGGTTCAACACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCAACACTGAGCATGGAAGTCAGCAGCCTTAGGTTCAACACCCT  100

seq1  TCACAGGAGACCTCAGCAGAGCTATGGGGAGCACAAAGAAGCTCCTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGAGACCTCAGCAGAGCTATGGGGAGCACAAAGAAGCTCCTCCCC  150

seq1  TCGGATCTGGCCCCTGTGACCCTCCTTAGCCAAAGAGAATTTGGAGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATCTGGCCCCTGTGACCCTCCTTAGCCAAAGAGAATTTGGAGGA  198