BAC Information

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BAC

Clone NameB6Ng01-108P17
Chromosome13 (Build37)
Map Location 5,618,589 - 5,639,592
singlet/doubletdoublet
Overlap genenone
Upstream geneEG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395, Pitrm1, Pfkp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108P17.bB6Ng01-108P17.g
ACCDH916021DH916022
length371776
definitionDH916021|Mus musculus domesticus DNA, BAC clone: B6Ng01-108P17, 5' end.DH916022|Mus musculus domesticus DNA, BAC clone: B6Ng01-108P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,639,216 - 5,639,592)(5,618,589 - 5,619,365)
sequence
tatcatagtctctgacatcataacacattagtcacaaccatgacttcatt
agaaagttactgtactgattagattttctatgagctggggagatggctct
ccggacacaggatttgccactttacaagcaagaagacttgatctcagatg
tctctaaaatgaatataactgcatgctacatcggtaacccgttttcttcc
tggaagatgcgaatagaaactggaatttccctggaagctttcaggccata
aatttgtacaacagactgcctcaaacatagtcaaaggcaagaactaatgc
ctgacatatgtgttctgtggcatatggacatgtgtactcacagacatgaa
gatacagtatgagtgtgtgtg

gaattcctattacccccttacctaactgataattttaaaaagatgattaa
tgttgtgagcccattccttcaaccacggcatacctcaattgccaaagttc
caccccctagcatggcgtgttgattatatatgtaaaactatgacacaatt
atgtcattcatattttaatatagaaagaatagtcccaagtataaaaatga
gttggtttatattttaaccacacttctcttccaactatttttgaaactta
atctaatgtctatgtctgccttgagactttattagtatatcagttcggtt
ttgtcttgaaattagaacagaatgcataattcactcaagagatttgtgag
tcattttaaaaatatgattaaaaaaagattgcatggtcctcaagtagtac
agttagaagaactggagatgtatgttttgcgagtgcagtggacaccataa
gatgtcccaaaacagtgaagagcacattcaccaacattatgagcacccaa
aagcaggcagaaagacagccaccctgattaccagtccttcttctcctcct
cctttccctcctcctcctcctccacccctcttcctcactttccttcttag
ttttcatattttgaggatagaaaggtgatttaaattgcttactacttttg
cacgggaccagaattcagttcccaggatccatgtcaggtgagccacaact
gcctgtatctctagctccagggaattaatgtccttctctagccttcgtaa
gcattctcatgctaccagggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5639216_5639592
seq2: B6Ng01-108P17.b_48_424 (reverse)

seq1  CACACACACTCATACTGTATCTTCATGTCTGTGAGTACACATGTCCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTCATACTGTATCTTCATGTCTGTGAGTACACATGTCCATAT  50

seq1  GCCACAGAACACATATGTCAGGCATTAGTTCTTGCCTTTGACTATGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAACACATATGTCAGGCATTAGTTCTTGCCTTTGACTATGTTTG  100

seq1  AGGCAGTCTGTTGTACAAATTTATGGCCTGAAAGCTTCCAGGGAAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCTGTTGTACAAATTTATGGCCTGAAAGCTTCCAGGGAAATTCC  150

seq1  AGTTTCTATTCGCATCTTCCAGGAAGAAAACGGGTTACCGATGTAGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTATTCGCATCTTCCAGGAAGAAAACGGGTTACCGATGTAGCATG  200

seq1  CAGTTATATTCATTTTAGAGACATCTGAGATCAAGTCTTCTTGCTTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATATTCATTTTAGAGACATCTGAGATCAAGTCTTCTTGCTTGTAA  250

seq1  AGTGGCAAATCCTGTGTCCGGAGAGCCATCTCCCCAGCTCATAGAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAAATCCTGTGTCCGGAGAGCCATCTCCCCAGCTCATAGAAAATC  300

seq1  TAATCAGTACAGTAACTTTCTAATGAAGTCATGGTTGTGACTAATGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTACAGTAACTTTCTAATGAAGTCATGGTTGTGACTAATGTGTT  350

seq1  ATGATGTCAGAGACTATGATAGAATTC  377
      |||||||||||||||||||||||||||
seq2  ATGATGTCAGAGACTATGATAGAATTC  377


seq1: chr13_5618589_5619365
seq2: B6Ng01-108P17.g_66_841

seq1  GAATTCCTATTACCCCCTTACCTAACTGATAATTTTAAAAAGATGATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTACCCCCTTACCTAACTGATAATTTTAAAAAGATGATTAA  50

seq1  TGTTGTGAGCCCATTCCTTCAACCACGGCATACCTCAATTGCCAAAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGAGCCCATTCCTTCAACCACGGCATACCTCAATTGCCAAAGTTC  100

seq1  CACCCCCTAGCATGGCGTGTTGATTATATATGTAAAACTATGACACAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTAGCATGGCGTGTTGATTATATATGTAAAACTATGACACAATT  150

seq1  ATGTCATTCATATTTTAATATAGAAAGAATAGTCCCAAGTATAAAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTCATATTTTAATATAGAAAGAATAGTCCCAAGTATAAAAATGA  200

seq1  GTTGGTTTATATTTTAACCACACTTCTCTTCCAACTATTTTTGAAACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTATATTTTAACCACACTTCTCTTCCAACTATTTTTGAAACTTA  250

seq1  ATCTAATGTCTATGTCTGCCTTGAGACTTTATTAGTATATCAGTTCGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGTCTATGTCTGCCTTGAGACTTTATTAGTATATCAGTTCGGTT  300

seq1  TTGTCTTGAAATTAGAACAGAATGCATAATTCACTCAAGAGATTTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGAAATTAGAACAGAATGCATAATTCACTCAAGAGATTTGTGAG  350

seq1  TCATTTTAAAAATATGATTAAAAAAAGATTGCATGGTCCTCAAGTAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAAAAATATGATTAAAAAAAGATTGCATGGTCCTCAAGTAGTAC  400

seq1  AGTTAGAAGAACTGGAGATGTATGTTTTGCGAGTGCAGTGGACACCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAGAACTGGAGATGTATGTTTTGCGAGTGCAGTGGACACCATAA  450

seq1  GATGTCCCAAAACAGTGAAGAGCACATTCACCAACATTATGAGCACCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCCAAAACAGTGAAGAGCACATTCACCAACATTATGAGCACCCAA  500

seq1  AAGCAGGCAGAAAGACAGCCACCCTGATTACCAGTCCTTCTTCTCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCAGAAAGACAGCCACCCTGATTACCAGTCCTTCTTCTCCTCCT  550

seq1  CCTTTCCCTCCTCCTCCTCCTCCACCCCTCTTCCTCACTTTCCTTCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCTCCTCCTCCTCCTCCACCCCTCTTCCTCACTTTCCTTCTTAG  600

seq1  TTTTCATATTTTGAGGATAGAAAGGTGATTTAAATTGCTTACTACTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATTTTGAGGATAGAAAGGTGATTTAAATTGCTTACTACTTTTG  650

seq1  CACGGGACCAGAATTCAGTTCCCAGGATCCATGTCAGGTGAGCCACAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGACCAGAATTCAGTTCCCAGGATCCATGTCAGGTGAGCCACAACT  700

seq1  GCCTGTATCTCTAGCTCCAGGGAATTAATGTCCTTCTCTAGCCTTCGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTATCTCTAGCTCCAGGGAATTAATGTCCTTCTCTAGCCTTCGTAA  750

seq1  GCATTCTCATGCTACCAGGTGTGTGTG  777
      ||||||||||||||||||| |||||||
seq2  GCATTCTCATGCTACCAGG-GTGTGTG  776


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