BAC Information

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BAC

Clone NameB6Ng01-109B03
Chromosome13 (Build37)
Map Location 83,865,135 - 84,052,339
singlet/doubletdoublet
Overlap geneLOC623241, LOC432789, 2810049E08Rik
Upstream geneLOC667018, Mef2c, LOC100043111
Downstream geneLOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111, LOC382786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109B03.bB6Ng01-109B03.g
ACCDH916082DH916083
length1,177156
definitionDH916082|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B03, 5' end.DH916083|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,051,154 - 84,052,339)(83,865,135 - 83,865,290)
sequence
gaattcctaaaaataaaataattatgactatgcacaagaacttactcaga
gaactgtcttaaatagtgtgaaaataaaaaagaagtgttctaaatgggaa
tactcaatatggggagattattcactattatggatttattaagaaaactt
tattcagcataagttacctaagagtttggctatttagatagtctggctac
cctgggtaccaagctcagcccagagatccctatgtccacctagcaatcat
tgtgactacaggtggactacgtcatgagcccagctgggattgcaactgtg
ttgttcccaattgcgccacaagtgttttatccactgagccttttccagag
gcgcaaattttatatttgtggtaataaatagttaaaattattgtgaaatg
taaagcgatcgttaaatgaataccccaaatgagaggacttttaaactaca
tttttagacgcacttagagctagattcttagaaagtctggtttctatttg
actcctctagataagaaaatatcttgaaaacagtggtgtttcagataact
gcccatgtaattgtcaagagctcactctaagattggtagacaagcaatgt
gtggacgctttctacaggaatttcaaacaagattctggcttacgagctgc
atgctgtattgccaaggcactgttaaaatacgggtggcagtctgcaatag
aaacaggctttctgcaccatgaaacaggcattaacttttactatcagtgg
aagacacatgctaactctcatagtatttgcattggtatccatggaatttc
tgttgcatccaagaatgctcagtcctggagacacagcagtgaaccatagt
cccaccttctccaatttagacaagttcctggtgaagaacaaatattaaga
tagctaataagactgttattcactctgttaagaattttaagagttctcac
ggtgaagtactatgaaaaggagggctgtatttcttacatccagttatact
gtcacattatccacacttctgttgcttgattgacaataattctcttaata
ttagatagagccatgattttcttactacttcacatggaatacctttctca
gtgtcataggaaatgggacctctattggggtgctgctgtcaagaactctc
tgccgtccagtaacaggaaactagagc
acacacggctgtacttcgactttgaaattaaaataaacaaaaggttcaaa
atctagcttcgcgggaaccgctcacaaaaagagttttaatatccttatct
caaaagacaaggaaagagggaggaagagaacgagggagggaagggggaga
gaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84051154_84052339
seq2: B6Ng01-109B03.b_50_1226 (reverse)

seq1  GCTCTAGTTTCCTGTTACTGGCAGGCAGAGAGTTTCTTTGCACCAGCAGC  50
      |||||||||||||||||||||  ||||||||| |||||     |||||||
seq2  GCTCTAGTTTCCTGTTACTGGACGGCAGAGAG-TTCTT---GACAGCAGC  46

seq1  ACCACAAATATGAGTACCACATTACCCTATGACACTGAGATAGTTATTCC  100
      ||| | |||| |||  || ||||  ||||||||||||||| || ||||||
seq2  ACC-CCAATA-GAGGTCC-CATT-TCCTATGACACTGAGAAAGGTATTCC  92

seq1  ATTGTGAAGTAGTAAGAAAATCATGGCTCTATTCTAATA-TAAGAG-ATT  148
      | ||||||||||||||||||||||||||||| ||||||| |||||| |||
seq2  A-TGTGAAGTAGTAAGAAAATCATGGCTCTA-TCTAATATTAAGAGAATT  140

seq1  ATTGTCATACAAGCAACAGAAGTGTGGAT-ATGTGACAGTATAACTGGAT  197
      |||||||  |||||||||||||||||||| ||||||||||||||||||||
seq2  ATTGTCAATCAAGCAACAGAAGTGTGGATAATGTGACAGTATAACTGGAT  190

seq1  GTAAGGAAATACAGCCCTCC-TTTCATAGTACTTCACCCGTGAGAACTCT  246
      |||| ||||||||||||||| ||||||||||||||| |||||||||||||
seq2  GTAA-GAAATACAGCCCTCCTTTTCATAGTACTTCA-CCGTGAGAACTCT  238

seq1  TAAAATTC-TAACAGAGTGAATAACAGTCTTATTAGCTATCTTTAATATT  295
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  TAAAATTCTTAACAGAGTGAATAACAGTCTTATTAGCTATC-TTAATATT  287

seq1  TGTTCTTCACCAGGAACTTGTCTAAATTGGAGAAGGTGGGACTATTGGTT  345
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTTCTTCACCAGGAACTTGTCTAAATTGGAGAAGGTGGGACTA-TGGTT  336

seq1  CACTGCTGTGTCTCCAGGACTGAGCATTCTTGGATGCAACAGAAATTCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGTGTCTCCAGGACTGAGCATTCTTGGATGCAACAGAAATTCCA  386

seq1  TGGATACCAATGCAAATACTATGAGAGTTAGCATGTGTCTTCCACTGATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACCAATGCAAATACTATGAGAGTTAGCATGTGTCTTCCACTGATA  436

seq1  GTAAAAGTTAATGCCTGTTTCATGGTGCAGAAAGCCTGTTTCTATTGCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTTAATGCCTGTTTCATGGTGCAGAAAGCCTGTTTCTATTGCAG  486

seq1  ACTGCCACCCGTATTTTAACAGTGCCTTGGCAATACAGCATGCAGCTCGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCACCCGTATTTTAACAGTGCCTTGGCAATACAGCATGCAGCTCGT  536

seq1  AAGCCAGAATCTTGTTTGAAATTCCTGTAGAAAGCGTCCACACATTGCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAATCTTGTTTGAAATTCCTGTAGAAAGCGTCCACACATTGCTT  586

seq1  GTCTACCAATCTTAGAGTGAGCTCTTGACAATTACATGGGCAGTTATCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCAATCTTAGAGTGAGCTCTTGACAATTACATGGGCAGTTATCTG  636

seq1  AAACACCACTGTTTTCAAGATATTTTCTTATCTAGAGGAGTCAAATAGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCACTGTTTTCAAGATATTTTCTTATCTAGAGGAGTCAAATAGAA  686

seq1  ACCAGACTTTCTAAGAATCTAGCTCTAAGTGCGTCTAAAAATGTAGTTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACTTTCTAAGAATCTAGCTCTAAGTGCGTCTAAAAATGTAGTTTA  736

seq1  AAAGTCCTCTCATTTGGGGTATTCATTTAACGATCGCTTTACATTTCACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTCTCATTTGGGGTATTCATTTAACGATCGCTTTACATTTCACA  786

seq1  ATAATTTTAACTATTTATTACCACAAATATAAAATTTGCGCCTCTGGAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTAACTATTTATTACCACAAATATAAAATTTGCGCCTCTGGAAA  836

seq1  AGGCTCAGTGGATAAAACACTTGTGGCGCAATTGGGAACAACACAGTTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGTGGATAAAACACTTGTGGCGCAATTGGGAACAACACAGTTGC  886

seq1  AATCCCAGCTGGGCTCATGACGTAGTCCACCTGTAGTCACAATGATTGCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCTGGGCTCATGACGTAGTCCACCTGTAGTCACAATGATTGCT  936

seq1  AGGTGGACATAGGGATCTCTGGGCTGAGCTTGGTACCCAGGGTAGCCAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGACATAGGGATCTCTGGGCTGAGCTTGGTACCCAGGGTAGCCAGA  986

seq1  CTATCTAAATAGCCAAACTCTTAGGTAACTTATGCTGAATAAAGTTTTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAAATAGCCAAACTCTTAGGTAACTTATGCTGAATAAAGTTTTCT  1036

seq1  TAATAAATCCATAATAGTGAATAATCTCCCCATATTGAGTATTCCCATTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATCCATAATAGTGAATAATCTCCCCATATTGAGTATTCCCATTT  1086

seq1  AGAACACTTCTTTTTTATTTTCACACTATTTAAGACAGTTCTCTGAGTAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTTCTTTTTTATTTTCACACTATTTAAGACAGTTCTCTGAGTAA  1136

seq1  GTTCTTGTGCATAGTCATAATTATTTTATTTTTAGGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTGCATAGTCATAATTATTTTATTTTTAGGAATTC  1177

seq1: chr13_83865135_83865290
seq2: B6Ng01-109B03.g_72_227

seq1  ACACACGGCTGTACTTCGACTTTGAAATTAAAATAAACAAAAGGTTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGGCTGTACTTCGACTTTGAAATTAAAATAAACAAAAGGTTCAAA  50

seq1  ATCTAGCTTCGCGGGAACCGCTCACAAAAAGAGTTTTAATATCCTTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCTTCGCGGGAACCGCTCACAAAAAGAGTTTTAATATCCTTATCT  100

seq1  CAAAAGACAAGGAAAGAGGGAGGAAGAGAACGAGGGAGGGAAGGGGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACAAGGAAAGAGGGAGGAAGAGAACGAGGGAGGGAAGGGGGAGA  150

seq1  GAGGGA  156
      ||||||
seq2  GAGGGA  156