BAC Information

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BAC

Clone NameB6Ng01-109M21
Chromosome13 (Build37)
Map Location 12,554,068 - 12,706,673
singlet/doubletdoublet
Overlap geneEdaradd, Ero1lb, LOC664862
Upstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900
Downstream geneEG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109M21.bB6Ng01-109M21.g
ACCDH916609DH916610
length1,130997
definitionDH916609|Mus musculus domesticus DNA, BAC clone: B6Ng01-109M21, 5' end.DH916610|Mus musculus domesticus DNA, BAC clone: B6Ng01-109M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,705,529 - 12,706,673)(12,554,068 - 12,555,060)
sequence
gaattctggcaaagcctacacaaatcgcctgtacgatagcactgtataaa
agtttatctgtcaccatacctgcaatgatttggctgttgcagccagtgcc
cacagctcctgtgtccttgtctctagcagggcggtacctgccagcagcca
agggcaaggcttgctggaaagcacagcctcattaaggccgttctgtttgc
acccattttgtagcacatgcacactttacagttggtgaatgctaggcgtc
tgttttcttacagtaacaagcaagctatcatccatttttacaacaaagtt
gtcagcattcatgtcagcaataaaaagactacagctcttaaatgttgtca
actggtgctggaatatacacgtgcagtggctgtgtaccacatgtagggaa
ggtcgtctgaactggctttgcgtcttctcccttacttcctctgctaacaa
aactgttcctaatgtgttagacataggaaaagaaaagttcatgttcacat
catgaaacttacaacctggtgatattaaagcacatggggccaaacatggt
attatggttataatcccagcgctagctcaagtctgaagttagccggggct
atagcattactctaagataagtaagttcatgggaataaggcattgccact
gaaaatgtcactctggtaccagcagtgaggtctgctgtaacaaggtcagg
acacacctttttagctgctgagccatttgcctgagcagttaggaattctg
gccaacctgtgttcatatccatcattgattgacacatattccttagataa
tgtctggagtgttgtagagttgtgaactagaggttattacagtatatgcc
ccagtcacattttattgtggaaccaacactagacccctatgaagagcaaa
agaagtattagtcactgggcacttcagaagcatgtgagaatctcatttgg
aggtatatactgtctgttagatgtatgcacacatatgcatgtgtgcctac
cttcacagggagatcatatatccaggcctgctaagcctggtatgctttgc
actgcactacacacaattctagcctttgctgtttgttctactcaggtaca
aatatttatcaaattcaagtttagcattat
gggtcactctgggacagatacctgatctcaagggtgttaaaaatacactt
aaagaataatcgtggggggtgtggccggggtactcctgggtttgcctcct
ttgcagccttgggtcagaactgaacaatgttgtgagccaatcagatttag
cagccactcattgccaataactagccttgtgtgtggaggaattcgttctt
ctttgtccctgcaagaaaccccatcctgtgagcagtagccagaacatgtc
aacactgggtgattggccgcttattctgtgctggagtttactacagggaa
cgcttccttaggaaacagtttagacactgatgctcagttctgagcagagt
agatggtcaataagcactgagctgcatagtcagggcgctgcactgctgac
ggtttgccccgtatttgtacgaacaaacttaaataaaactgtagggcgct
gagaatggctgactgagctacctagttttgatgtcctaatggcctcaagg
ttatgttcttttctagatattagccatgtttgtttttaaaggacatgttt
gacatagccatttggtctttttctctggctgtgtgttttattttgttttg
aacttgtattttatttttttaaagcctcttagcagcaacctcgtgttctg
attcgttactttttctccttcctcatgtccattttctaattttgattaac
tcctcaagattctactttaatagctggagttaacccttgatgtatgttgt
cttagctctgttgttattactaggtgtggtaggcttctcactacactttc
tggggtttgtaagagatagggtgtggagagctttttggagcccgttttct
agaaactttgcaggattaacattggggcgaggacaccagaagttagctca
tgcaggaataatcgttttgggctaaagcaaagaagtaggcttcagtcaga
atgtgtactttggctagagaagggaagataggctacgattatcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12705529_12706673
seq2: B6Ng01-109M21.b_49_1178 (reverse)

seq1  ATAATTGGCTAAACTTGTAAATTTTGATAAATTATTTGTAACCTTGTAGT  50
      |||||  ||||||||||   | ||||||||| ||||||| ||||   |||
seq2  ATAAT--GCTAAACTTG---AATTTGATAAA-TATTTGT-ACCT--GAGT  41

seq1  AGAACAAACAGCAAAGGCTAGAA-TGTGTGTAGTGCAGTGGCAAGGCATA  99
      ||||||||||||||||||||||| ||||||||||||||| |||| |||||
seq2  AGAACAAACAGCAAAGGCTAGAATTGTGTGTAGTGCAGT-GCAAAGCATA  90

seq1  CCCAGTGCTTAGCAGGCCTGGATATATGATCTCCCCTGTGAAGGTAGGCA  149
       |||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  -CCAG-GCTTAGCAGGCCTGGATATATGATCT-CCCTGTGAAGGTAGGCA  137

seq1  CACATGCATATGTGTGCATAACATTCTAACAGACAGTATATACCTCCAAA  199
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  CACATGCATATGTGTGCAT-ACA-TCTAACAGACAGTATATACCTCCAAA  185

seq1  TGAGATTCTCACATTGCTTCTGAAGTGCCCAGTGACTAATACTTCTTTTG  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCTCACA-TGCTTCTGAAGTGCCCAGTGACTAATACTTCTTTTG  234

seq1  CTCTTCATAGGGGTCTAGTGTTGGTTCCACAATAAAATGTGACTGGGGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATAGGGGTCTAGTGTTGGTTCCACAATAAAATGTGACTGGGGCA  284

seq1  TATACTGTAATAACCTCTAGTTCACAACTCTACAACACTCCAGACATTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTAATAACCTCTAGTTCACAACTCTACAACACTCCAGACATTAT  334

seq1  CTAAGGAATATGTGTCAATCAATGATGGATATGAACACAGGTTGGCCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAATATGTGTCAATCAATGATGGATATGAACACAGGTTGGCCAGA  384

seq1  ATTCCTAACTGCTCAGGCAAATGGCTCAGCAGCTAAAAAGGTGTGTCCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAACTGCTCAGGCAAATGGCTCAGCAGCTAAAAAGGTGTGTCCTG  434

seq1  ACCTTGTTACAGCAGACCTCACTGCTGGTACCAGAGTGACATTTTCAGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTACAGCAGACCTCACTGCTGGTACCAGAGTGACATTTTCAGTG  484

seq1  GCAATGCCTTATTCCCATGAACTTACTTATCTTAGAGTAATGCTATAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCCTTATTCCCATGAACTTACTTATCTTAGAGTAATGCTATAGCC  534

seq1  CCGGCTAACTTCAGACTTGAGCTAGCGCTGGGATTATAACCATAATACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTAACTTCAGACTTGAGCTAGCGCTGGGATTATAACCATAATACCA  584

seq1  TGTTTGGCCCCATGTGCTTTAATATCACCAGGTTGTAAGTTTCATGATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCCCCATGTGCTTTAATATCACCAGGTTGTAAGTTTCATGATGT  634

seq1  GAACATGAACTTTTCTTTTCCTATGTCTAACACATTAGGAACAGTTTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGAACTTTTCTTTTCCTATGTCTAACACATTAGGAACAGTTTTGT  684

seq1  TAGCAGAGGAAGTAAGGGAGAAGACGCAAAGCCAGTTCAGACGACCTTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGGAAGTAAGGGAGAAGACGCAAAGCCAGTTCAGACGACCTTCC  734

seq1  CTACATGTGGTACACAGCCACTGCACGTGTATATTCCAGCACCAGTTGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTGGTACACAGCCACTGCACGTGTATATTCCAGCACCAGTTGAC  784

seq1  AACATTTAAGAGCTGTAGTCTTTTTATTGCTGACATGAATGCTGACAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAAGAGCTGTAGTCTTTTTATTGCTGACATGAATGCTGACAACT  834

seq1  TTGTTGTAAAAATGGATGATAGCTTGCTTGTTACTGTAAGAAAACAGACG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTAAAAATGGATGATAGCTTGCTTGTTACTGTAAGAAAACAGACG  884

seq1  CCTAGCATTCACCAACTGTAAAGTGTGCATGTGCTACAAAATGGGTGCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATTCACCAACTGTAAAGTGTGCATGTGCTACAAAATGGGTGCAA  934

seq1  ACAGAACGGCCTTAATGAGGCTGTGCTTTCCAGCAAGCCTTGCCCTTGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACGGCCTTAATGAGGCTGTGCTTTCCAGCAAGCCTTGCCCTTGGC  984

seq1  TGCTGGCAGGTACCGCCCTGCTAGAGACAAGGACACAGGAGCTGTGGGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCAGGTACCGCCCTGCTAGAGACAAGGACACAGGAGCTGTGGGCA  1034

seq1  CTGGCTGCAACAGCCAAATCATTGCAGGTATGGTGACAGATAAACTTTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCAACAGCCAAATCATTGCAGGTATGGTGACAGATAAACTTTTA  1084

seq1  TACAGTGCTATCGTACAGGCGATTTGTGTAGGCTTTGCCAGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGCTATCGTACAGGCGATTTGTGTAGGCTTTGCCAGAATTC  1130

seq1: chr13_12554068_12555060
seq2: B6Ng01-109M21.g_72_1068

seq1  GGGTCACTCTGGGACAGATACCTGATCTCAAGGGTGTTAAAAATACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACTCTGGGACAGATACCTGATCTCAAGGGTGTTAAAAATACACTT  50

seq1  AAAGAATAATCGTGGGGGGTGTGGCCGGGGTACTCCTGGGTTTGCCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAATCGTGGGGGGTGTGGCCGGGGTACTCCTGGGTTTGCCTCCT  100

seq1  TTGCAGCCTTGGGTCAGAACTGAACAATGTTGTGAGCCAATCAGATTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCCTTGGGTCAGAACTGAACAATGTTGTGAGCCAATCAGATTTAG  150

seq1  CAGCCACTCATTGCCAATAACTAGCCTTGTGTGTGGAGGAATTCGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTCATTGCCAATAACTAGCCTTGTGTGTGGAGGAATTCGTTCTT  200

seq1  CTTTGTCCCTGCAAGAAACCCCATCCTGTGAGCAGTAGCCAGAACATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCCTGCAAGAAACCCCATCCTGTGAGCAGTAGCCAGAACATGTC  250

seq1  AACACTGGGTGATTGGCCGCTTATTCTGTGCTGGAGTTTACTACAGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGGTGATTGGCCGCTTATTCTGTGCTGGAGTTTACTACAGGGAA  300

seq1  CGCTTCCTTAGGAAACAGTTTAGACACTGATGCTCAGTTCTGAGCAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCCTTAGGAAACAGTTTAGACACTGATGCTCAGTTCTGAGCAGAGT  350

seq1  AGATGGTCAATAAGCACTGAGCTGCATAGTCAGGGCGCTGCACTGCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTCAATAAGCACTGAGCTGCATAGTCAGGGCGCTGCACTGCTGAC  400

seq1  GGTTTGCCCCGTATTTGTACGAACAAACTTAAATAAAACTGTAGGGCGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCCCCGTATTTGTACGAACAAACTTAAATAAAACTGTAGGGCGCT  450

seq1  GAGAATGGCTGACTGAGCTACCTAGTTTTGATGTCCTAATGGCCTCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGGCTGACTGAGCTACCTAGTTTTGATGTCCTAATGGCCTCAAGG  500

seq1  TTATGTTCTTTTCTAGATATTAGCCATGTTTGTTTTTAAAGGACATGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCTTTTCTAGATATTAGCCATGTTTGTTTTTAAAGGACATGTTT  550

seq1  GACATAGCCATTTGGTCTTTTTCTCTGGCTGTGTGTTTTATTTTGTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGCCATTTGGTCTTTTTCTCTGGCTGTGTGTTTTATTTTGTTTTG  600

seq1  AACTTGTATTTTATTTTTTTAAAGCCTCTTAGCAGCAACCTCGTGTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTATTTTATTTTTTTAAAGCCTCTTAGCAGCAACCTCGTGTTCTG  650

seq1  ATTCGTTACTTTTTCTCCTTCCTCATGTCCATTTTCTAATTTTGATTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTACTTTTTCTCCTTCCTCATGTCCATTTTCTAATTTTGATTAAC  700

seq1  TCCTCAAGATTCTACTTTAATAGCTGGAGTTAACCCTTGATGTATGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGATTCTACTTTAATAGCTGGAGTTAACCCTTGATGTATGTTGT  750

seq1  CTTAGCTCTGTTGTTATTACTAGGTGTGGTAGGCTTCTCACTACACTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTCTGTTGTTATTACTAGGTGTGGTAGGCTTCTCACTACACTTTC  800

seq1  TGGGGTTTGTAAGAGATAGGGTGTGGAGAGC-TTTTGGAGCCCG-TTTCT  848
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TGGGGTTTGTAAGAGATAGGGTGTGGAGAGCTTTTTGGAGCCCGTTTTCT  850

seq1  AGAAACTTTGCAGGAATTAAACATT-GGGCCAGGACA-CAGAAGTAAGCT  896
      |||||||||||||||  | |||||| |||| |||||| ||||||| ||||
seq2  AGAAACTTTGCAGGA--TTAACATTGGGGCGAGGACACCAGAAGTTAGCT  898

seq1  CAGGCAGGAAT-ATCGTTTTGGGCTAGAGCAAAGAAGTAGGCTTCAGTCA  945
      || |||||||| |||||||||||||| |||||||||||||||||||||| 
seq2  CATGCAGGAATAATCGTTTTGGGCTAAAGCAAAGAAGTAGGCTTCAGTC-  947

seq1  AGAATGTG-ACTTTGGGCTAGGAGAGGGAAG-TAGGCTCAGA-TATCTTG  992
      |||||||| ||||| ||||||   ||||||| ||||||  || |||||||
seq2  AGAATGTGTACTTT-GGCTAGAGAAGGGAAGATAGGCTACGATTATCTTG  996

seq1  G  993
      |
seq2  G  997