BAC Information

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BAC

Clone NameB6Ng01-110D18
Chromosome13 (Build37)
Map Location 116,368,251 - 116,461,791
singlet/doubletdoublet
Overlap genenone
Upstream gene4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
Downstream geneLOC100041045, EG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110D18.bB6Ng01-110D18.g
ACCDH916915DH916916
length1,1211,023
definitionDH916915|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D18, 5' end.DH916916|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,460,660 - 116,461,791)(116,368,251 - 116,369,308)
sequence
gaattcaactcagcattttcactcctgtggtttctcccaatttttactcc
aaagctgtgatgtcattatcttcaaataagtggataaaaacaatgggagc
ttgtttaaaactatgtctctgcatatatagcaaaatcatctgcctataca
atttttaatttttggaagtatgtaataattacctcattgcccctttcttt
tcaattgataaaaattgaattgaatttgcccattttgatacccagagcct
gattctttttccaaaatgcagatcgctacttataaactatcatccctttg
ttatacacacaaatcccttgcttacatttggtgatcagaatattatcctg
acacagcagcgctctactcaccgtggcatctcagaatagtaaactcttct
gaggtttttacgactatcaataatttatataaatggcaagtgtcttgaag
tatacataccacagtgctactataatgaaggcagcgttgcatctaccaaa
acgagcaagtgcatagagcaaaattaaccaagaaatgacaaaacaacagc
atgcacagtgtgcattagccttttgagtagttttgcttatgcaattccaa
attcaagagtaataataatctataatctgaaatccctaatgattcacact
ctacacttatgccagtgacttgctaaagcacaatcataaatcacaggtaa
atctaagttcctcaccattaactcctgtccacccttctatgcaggctctt
ttgcatgaagattcaagagtctatttgttcttggcatgttgattaaaacg
accaccgggaaattttataatttattaccatgtgcatgtatcatatagtt
aaattaaatatgtaccaaatacttatgctaaaacattataaacacatatt
aaatatcccctcatttaatattacatgcatttgtatggtatacagtaaca
ttataagttaagaataaaggttactattcaggtattattagtggaatttt
aagtcttcataaaagaaaacagcaaactgttactgaaatgcaaatatctt
taagatgtcctttgagtagacacgtggggagctatgtgtcttaggaacca
ttctcctgtaagattatggtg
gaattccatgagtccttagttctagtgttaatagctggttatatagaagg
ccaaatataaaaagtaaagaaatgtttctttacatggacattggagatca
atactcctaagatcaattgttcatattacagtttcagaaatagaaattgt
ctaatttcttttaatttataagacaacaaaaaccactaattacatttctg
gtatatcataaatgttgcataacacacttgttcccttagtatattgtctg
taataattcttaccattaggcaaaacactaataagttttatataatatat
agagaagaattttcaacatctaactttccctcagtaaaatatatatgaaa
aagtattatctcacatatctctaataaaataataatatggagcaagattg
agacatgaatgaactgtatatgtaccacactcaatgcatataacaaagaa
taaactaacaacattctttagttcagaaatgagggtacttgaataaaaca
ggaggtgcttaaattcaagattattcactttttctcattggaatattgga
tattctcatgggagtgcaatactttttccatccattaaagaaatgacaaa
agacccattcactatttcgtagtcattattgataatctgataattgatca
ctgagaaagccggtgtgataaatgttttcatattgatggctgagcttagt
cacctacatttctagtgatatgtgatagggttaaagaaaatcttagctct
aatgtaaggacagcataattattccatttatttttgtttctttgtttggt
tttttttttttttttttcaagacagggtttctctgtgtcgacctggctgt
cctggaactcacttttgtagacaaggctgccttgaactcagaagtccacc
tgctctgggataaagcgtgtgccaccacacccaggatatttagagagatg
ctctgcctctccattatttagtctggtcagcatagatagatcacacagta
gtaatgttacactagcagttgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116460660_116461791
seq2: B6Ng01-110D18.b_45_1165 (reverse)

seq1  CACCATAATTCCTCTACAGGAGGAAATGGTTCCCTAAGACACATAGGCTC  50
      |||||||||  || ||||||||  ||||||| ||||||||||||||   |
seq2  CACCATAAT--CT-TACAGGAG--AATGGTT-CCTAAGACACATAGCTCC  44

seq1  CCACGTTGTTCTACTTCAAAGGGACATCTTAAGGATATTTGCATTTCAGT  100
      ||||||   ||||| ||||| ||||||||||| |||||||||||||||||
seq2  CCACGT--GTCTAC-TCAAA-GGACATCTTAAAGATATTTGCATTTCAGT  90

seq1  AACAGTTTGCTGGTTTTTCTTTTATGAAGACTTAAAAATTCACTTATAAT  150
      ||||||||||||  ||||||||||||||||||||||| | |||| |||||
seq2  AACAGTTTGCTG--TTTTCTTTTATGAAGACTTAAAATTCCACTAATAAT  138

seq1  ACTTGAATAGTAA-CTTTA-TCTTAACTTAT-ATGTTACTTGTATACCAT  197
      || |||||||||| ||||| ||||||||||| ||||||| ||||||||||
seq2  ACCTGAATAGTAACCTTTATTCTTAACTTATAATGTTAC-TGTATACCAT  187

seq1  ACAAATGCATGTAAATATAAATGAGGGGATATTTAATATGTGTTTATAAT  247
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  ACAAATGCATGTAATATTAAATGAGGGGATATTTAATATGTGTTTATAAT  237

seq1  GTTTTAGCATAAGTATTTGGTACATATTTAATTTAACTATTATGATACAT  297
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTTTAGCATAAGTATTTGGTACATATTTAATTTAACTA-TATGATACAT  286

seq1  GCACATGGTAATAAATTATAAAATTTCCCGGTGGTCGTTTTAATCAACAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGTAATAAATTATAAAATTTCCCGGTGGTCGTTTTAATCAACAT  336

seq1  GCCAAGAACAAATAGACTCTTGAATCTTCATGCAAAAGAGCCTGCATAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAACAAATAGACTCTTGAATCTTCATGCAAAAGAGCCTGCATAGA  386

seq1  AGGGTGGACAGGAGTTAATGGTGAGGAACTTAGATTTACCTGTGATTTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGACAGGAGTTAATGGTGAGGAACTTAGATTTACCTGTGATTTAT  436

seq1  GATTGTGCTTTAGCAAGTCACTGGCATAAGTGTAGAGTGTGAATCATTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGCTTTAGCAAGTCACTGGCATAAGTGTAGAGTGTGAATCATTAG  486

seq1  GGATTTCAGATTATAGATTATTATTACTCTTGAATTTGGAATTGCATAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCAGATTATAGATTATTATTACTCTTGAATTTGGAATTGCATAAG  536

seq1  CAAAACTACTCAAAAGGCTAATGCACACTGTGCATGCTGTTGTTTTGTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTACTCAAAAGGCTAATGCACACTGTGCATGCTGTTGTTTTGTCA  586

seq1  TTTCTTGGTTAATTTTGCTCTATGCACTTGCTCGTTTTGGTAGATGCAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGTTAATTTTGCTCTATGCACTTGCTCGTTTTGGTAGATGCAAC  636

seq1  GCTGCCTTCATTATAGTAGCACTGTGGTATGTATACTTCAAGACACTTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTCATTATAGTAGCACTGTGGTATGTATACTTCAAGACACTTGC  686

seq1  CATTTATATAAATTATTGATAGTCGTAAAAACCTCAGAAGAGTTTACTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATATAAATTATTGATAGTCGTAAAAACCTCAGAAGAGTTTACTAT  736

seq1  TCTGAGATGCCACGGTGAGTAGAGCGCTGCTGTGTCAGGATAATATTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATGCCACGGTGAGTAGAGCGCTGCTGTGTCAGGATAATATTCTG  786

seq1  ATCACCAAATGTAAGCAAGGGATTTGTGTGTATAACAAAGGGATGATAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAATGTAAGCAAGGGATTTGTGTGTATAACAAAGGGATGATAGT  836

seq1  TTATAAGTAGCGATCTGCATTTTGGAAAAAGAATCAGGCTCTGGGTATCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTAGCGATCTGCATTTTGGAAAAAGAATCAGGCTCTGGGTATCA  886

seq1  AAATGGGCAAATTCAATTCAATTTTTATCAATTGAAAAGAAAGGGGCAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCAAATTCAATTCAATTTTTATCAATTGAAAAGAAAGGGGCAAT  936

seq1  GAGGTAATTATTACATACTTCCAAAAATTAAAAATTGTATAGGCAGATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATTATTACATACTTCCAAAAATTAAAAATTGTATAGGCAGATGA  986

seq1  TTTTGCTATATATGCAGAGACATAGTTTTAAACAAGCTCCCATTGTTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTATATATGCAGAGACATAGTTTTAAACAAGCTCCCATTGTTTTT  1036

seq1  ATCCACTTATTTGAAGATAATGACATCACAGCTTTGGAGTAAAAATTGGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTATTTGAAGATAATGACATCACAGCTTTGGAGTAAAAATTGGG  1086

seq1  AGAAACCACAGGAGTGAAAATGCTGAGTTGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  AGAAACCACAGGAGTGAAAATGCTGAGTTGAATTC  1121

seq1: chr13_116368251_116369308
seq2: B6Ng01-110D18.g_70_1092

seq1  GAATTCCATGAGTCCTTAGTTCTAGTGTTAATAGCTGGTTATATAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGTCCTTAGTTCTAGTGTTAATAGCTGGTTATATAGAAGG  50

seq1  CCAAATATAAAAAGTAAAGAAATGTTTCTTTACATGGACATTGGAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATAAAAAGTAAAGAAATGTTTCTTTACATGGACATTGGAGATCA  100

seq1  ATACTCCTAAGATCAATTGTTCATATTACAGTTTCAGAAATAGAAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCTAAGATCAATTGTTCATATTACAGTTTCAGAAATAGAAATTGT  150

seq1  CTAATTTCTTTTAATTTATAAGACAACAAAAACCACTAATTACATTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCTTTTAATTTATAAGACAACAAAAACCACTAATTACATTTCTG  200

seq1  GTATATCATAAATGTTGCATAACACACTTGTTCCCTTAGTATATTGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCATAAATGTTGCATAACACACTTGTTCCCTTAGTATATTGTCTG  250

seq1  TAATAATTCTTACCATTAGGCAAAACACTAATAAGTTTTATATAATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTCTTACCATTAGGCAAAACACTAATAAGTTTTATATAATATAT  300

seq1  AGAGAAGAATTTTCAACATCTAACTTTCCCTCAGTAAAATATATATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAATTTTCAACATCTAACTTTCCCTCAGTAAAATATATATGAAA  350

seq1  AAGTATTATCTCACATATCTCTAATAAAATAATAATATGGAGCAAGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTATCTCACATATCTCTAATAAAATAATAATATGGAGCAAGATTG  400

seq1  AGACATGAATGAACTGTATATGTACCACACTCAATGCATATAACAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGAATGAACTGTATATGTACCACACTCAATGCATATAACAAAGAA  450

seq1  TAAACTAACAACATTCTTTAGTTCAGAAATGAGGGTACTTGAATAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAACAACATTCTTTAGTTCAGAAATGAGGGTACTTGAATAAAACA  500

seq1  GGAGGTGCTTAAATTCAAGATTATTCACTTTTTCTCATTGGAATATTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGCTTAAATTCAAGATTATTCACTTTTTCTCATTGGAATATTGGA  550

seq1  TATTCTCATGGGAGTGCAATACTTTTTCCATCCATTAAAGAAATGACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCATGGGAGTGCAATACTTTTTCCATCCATTAAAGAAATGACAAA  600

seq1  AGACCCATTCACTATTTCGTAGTCATTATTGATAATCTGATAATTGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATTCACTATTTCGTAGTCATTATTGATAATCTGATAATTGATCA  650

seq1  CTGAGAAAGCCGGTGTGATAAATGTTTTCATATTGATGGCTGAGCTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGCCGGTGTGATAAATGTTTTCATATTGATGGCTGAGCTTAGT  700

seq1  CACCTACATTTCTAGTGATATGTGATAGGGTTAAAGAAAATCTTAGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACATTTCTAGTGATATGTGATAGGGTTAAAGAAAATCTTAGCTCT  750

seq1  AATGTAAGGACAGCATAATTATTCCATTTTATTTTTTGTTTCTTTGTTTG  800
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  AATGTAAGGACAGCATAATTATTCCATTT--ATTTTTGTTTCTTTGTTTG  798

seq1  G-TTTTTTTTTTTTTTTTTCAAGACAGGGTTTCTCTGTGTCGACCTGGCT  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTTTTTCAAGACAGGGTTTCTCTGTGTCGACCTGGCT  848

seq1  GTCCTGGAACTCAC-TTTGTAGACCAGGCTGGCCTTGAACTCAGAAGTCC  898
      |||||||||||||| ||||||||| ||||| |||||||||||||||||||
seq2  GTCCTGGAACTCACTTTTGTAGACAAGGCT-GCCTTGAACTCAGAAGTCC  897

seq1  ACCTGCCTCTGGGATTAAAGGCGTGTGCCACCACACCCAGGGATTATTTT  948
      ||||| |||||||||  || ||||||||||||||||||| ||||   |||
seq2  ACCTG-CTCTGGGAT--AAAGCGTGTGCCACCACACCCA-GGAT--ATTT  941

seq1  AGAGGAAGATTGCCCTCTTGCCCTCTCCATTATTTTAGGTCCTTGGGTCC  998
      ||||  ||||    ||||   ||||||||||||||   |||  |||   |
seq2  AGAG--AGAT---GCTCT--GCCTCTCCATTATTT--AGTC--TGG--TC  978

seq1  AGGCCCAATAGATAAGATCAACACAGGTAAGTTAAAATGTTTACACACTA  1048
      ||     |||||| ||||| ||||||   |||   ||||||   ||||||
seq2  AG----CATAGAT-AGATC-ACACAG--TAGT---AATGTT---ACACTA  1014

seq1  GCAGGTTGAT  1058
      ||| ||||||
seq2  GCA-GTTGAT  1023