BAC Information

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BAC

Clone NameB6Ng01-110E19
Chromosome13 (Build37)
Map Location 64,878,872 - 64,879,971
singlet/doubletsinglet
Overlap geneCntnap3
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110E19.bB6Ng01-110E19.g
ACCDH916961DH916962
length1,0911,255
definitionDH916961|Mus musculus domesticus DNA, BAC clone: B6Ng01-110E19, 5' end.DH916962|Mus musculus domesticus DNA, BAC clone: B6Ng01-110E19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactagaaaaggacagacatgcttaagaattcaataagtacacac
tttatgattcattatcatctccaccaaagaaaaattacagtttaagagac
tttaatggcctcttctaaaattttaccatgttgcacttctatccagagtt
tttaataaaatccttaattgtattacattcaagcttgagaaagcttggca
aatgattatttttccatctttctctgactgaaaggattgtaggaattaaa
tcccaagcaaaggaacaaactgttacaacatgcattcttttttattttat
tttatttttaccatgtactatacagcctttaaacctttctttccgtgtga
ggatttatttgcctatatgtatatatgtgagagtatgtgtgttcacatgt
gtgtgtatgtggaggctatagactgacttcaattttctttttaacagctc
cccactttagtttaattttgtattttgagacagggttttttttgtgtgtg
tgtgtgttgccctggctgtcctgaaacttgctttgtagaccaggctgaca
ttaaattaagagatccacctgcctctgcttcctgagtgctggcattaaag
gcatatgccaccacacccagccaatactttattttataagatcagatttc
tcactcaacctggagattccaatttgattagatttgttggccagcagccc
cagggatcctcttgtctctgtctccctagtactgacatttcaggcagact
gccatgtctctccttttatatggggctggtgatctcatgtattcatgttt
gccaagcaagtactgtcccacctaagtcaccttgttctatatactatcct
actagattactttgctattgctgacagggtcacttttgctgtacttagta
tttcatatttgcttgtgtctcctgttgtcctagtgttagatgatggtaag
tgctgaggctgtagctcagtggcacagcagttgtcaatcatgtacaaggc
ctaggtttatctgtagcatcaataagcaatacttaaccataataagtgct
taaaataaaccagaacagaatttgtgctacaatacaaattc
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaaaagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctctcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgcagcctcagaagctctgtggctcttgccgggaaggtggc
tggttgtctggagctgaggatggtgccgccccagaatctctgtgactctc
tagcccgtcccagaaacggctggcactctgtattccacagggtcacccgt
gcagcctgccctccgcggagtcccggagccaagaaggctcccgccgggcg
cctgtgccacaaacctctcagccaggcagacccccgtgctctcaccagga
aggtggccggctgtctggagctgaagatggcgccgcccagaagctctgcg
actctctcgcccgtcccagaaacagctggcactctgtattccaacacggt
cacccgtgcagcctgccctccgcggagtcccggagccaagaaggctcctg
ccggcgcctgtgcaaaaacctctcaggccaggcagaccccgtgctctcac
caaggaagtggcgctgtctgagctaaaaatggcgccgcccaaaagcgtta
aagaaaaattataaccttgccctagtgctaaggagtactccagagcctca
acacattgctagaacaaggaactcacttactggaagcacaaacacatgac
ctgttggcaattcacaatgttctataacaggcttgtgaaaaaaggttcaa
taactctccaaggtacaaaaagagcgtggtgctctgaaaaaagctgatag
acttcaagacagcgcgtggttccaaaatggacatttataatagcatgaaa
tgtacacaccaaccacagagtggacatacacttaagttaatgcctcgtcg
taatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64878872_64879971
seq2: B6Ng01-110E19.b_44_1134

seq1  GAATTCACTAGAAAAGGACAGACATGCTTAAGAATTCAATAAGTACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGAAAAGGACAGACATGCTTAAGAATTCAATAAGTACACAC  50

seq1  TTTATGATTCATTATCATCTCCACCAAAGAAAAATTACAGTTTAAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATTCATTATCATCTCCACCAAAGAAAAATTACAGTTTAAGAGAC  100

seq1  TTTAATGGCCTCTTCTAAAATTTTACCATGTTGCACTTCTATCCAGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGCCTCTTCTAAAATTTTACCATGTTGCACTTCTATCCAGAGTT  150

seq1  TTTAATAAAATCCTTAATTGTATTACATTCAAGCTTGAGAAAGCTTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAATCCTTAATTGTATTACATTCAAGCTTGAGAAAGCTTGGCA  200

seq1  AATGATTATTTTTCCATCTTTCTCTGACTGAAAGGATTGTAGGAATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTATTTTTCCATCTTTCTCTGACTGAAAGGATTGTAGGAATTAAA  250

seq1  TCCCAAGCAAAGGAACAAACTGTTACAACATGCATTCTTTTTTATTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCAAAGGAACAAACTGTTACAACATGCATTCTTTTTTATTTTAT  300

seq1  TTTATTTTTACCATGTACTATACAGCCTTTAAACCTTTCTTTCCGTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTACCATGTACTATACAGCCTTTAAACCTTTCTTTCCGTGTGA  350

seq1  GGATTTATTTGCCTATATGTATATATGTGAGAGTATGTGTGTTCACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATTTGCCTATATGTATATATGTGAGAGTATGTGTGTTCACATGT  400

seq1  GTGTGTATGTGGAGGCTATAGACTGACTTCAATTTTCTTTTTAACAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTGGAGGCTATAGACTGACTTCAATTTTCTTTTTAACAGCTC  450

seq1  CCCACTTTAGTTTAATTTTGTATTTTGAGACAGGGTTTTTTTTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTAGTTTAATTTTGTATTTTGAGACAGGGTTTTTTTTGTGTGTG  500

seq1  TGTGTGTTGCCCTGGCTGTCCTGAAACTTGCTTTGTAGACCAGGCTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTGCCCTGGCTGTCCTGAAACTTGCTTTGTAGACCAGGCTGACA  550

seq1  TTAAATTAAGAGATCCACCTGCCTCTGCTTCCTGAGTGCTGGCATTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAAGAGATCCACCTGCCTCTGCTTCCTGAGTGCTGGCATTAAAG  600

seq1  GCATATGCCACCACACCCAGCCAATACTTTATTTTATAAGATCAGATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGCCACCACACCCAGCCAATACTTTATTTTATAAGATCAGATTTC  650

seq1  TCACTCAACCTGGAGATTCCAATTTGATTAGATTTGTTGGCCAGCAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAACCTGGAGATTCCAATTTGATTAGATTTGTTGGCCAGCAGCCC  700

seq1  CAGGGATCCTCTTGTCTCTGTCTCCCTAGTACTGACATTTCAGGCAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATCCTCTTGTCTCTGTCTCCCTAGTACTGACATTTCAGGCAGACT  750

seq1  GCCATGTCTCTCCTTTTATATGGGGCTGGTGATCTCATGTATTCATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTCTCTCCTTTTATATGGGGCTGGTGATCTCATGTATTCATGTTT  800

seq1  GCCAAGCAAGTACTGTCCCACCTAAGTCACCTTGTTCTATATACTATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCAAGTACTGTCCCACCTAAGTCACCTTGTTCTATATACTATCCT  850

seq1  ACTAGATTACTTTGCTATTGCTGACAAGGTTCACTTTTGCTGTACTTAGT  900
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  ACTAGATTACTTTGCTATTGCTGAC-AGGGTCACTTTTGCTGTACTTAGT  899

seq1  ATTTCATATTTGCTTGTGTTCTCCTGTTGTCCTAGTGTTAGATGATGTTA  950
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  ATTTCATATTTGCTTGTG-TCTCCTGTTGTCCTAGTGTTAGATGATGGTA  948

seq1  AGTGCTGAGGCTGTAGCTCAGTGGCACAGCAGTTGTCAATCATGTACAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTGCTGAGGCTGTAGCTCAGTGGCACAGCAGTTGTCAATCATGTACAAG  998

seq1  GCCTAGGTTTAATCTGTAGCATCAAATAAGCAAATACATAAACAATAAAT  1050
      |||||||||| |||||||||||| ||||||| ||||| | ||| ||||  
seq2  GCCTAGGTTT-ATCTGTAGCATC-AATAAGC-AATAC-TTAACCATAA--  1042

seq1  AAAGTGGCTTAAAATAAACCAGACAAGAATTGTTGCTACAATACATATTC  1100
       |||| |||||||||||||||||  ||||||  |||||||||||| ||||
seq2  TAAGT-GCTTAAAATAAACCAGAACAGAATTTGTGCTACAATACAAATTC  1091