BAC Information

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BAC

Clone NameB6Ng01-110K04
Chromosome13 (Build37)
Map Location 73,479,675 - 73,480,797
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042828, LOC100042832, LOC100042836, Irx2, LOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36
Downstream geneAytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110K04.bB6Ng01-110K04.g
ACCDH917203DH917204
length1,1041,102
definitionDH917203|Mus musculus domesticus DNA, BAC clone: B6Ng01-110K04, 5' end.DH917204|Mus musculus domesticus DNA, BAC clone: B6Ng01-110K04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctgtagaccaggctggcctcaaactcagaaatcctcctgcc
tctgcctcctaagtgctagaataagaggcgtgtgccaccaccacctggag
ggacactggattcttgatttcctagctacaagatcattgcctcaggtctt
gctgcaccttagccgcagtgtgcatggttgccctcacttgggagaggaga
ggagcaagcagagaatttttatagaagaagcccactcttccattgtccac
agtttagaccaggaacaggcaactcagatattagccagatctctggtact
cccagcctcacagagaagtctcctgaagtatcccctagagtcactgccat
ggccgttgtcactgccttttgtgcagactgtgggttctgccacaactgag
gaccccagactggcagcttcaacagccaacattcagcttcccataacctt
gaagtggagatctgtgacccaagcgttggctttccttgaggcctcattgg
aggtcacccttctgtgtacatgtgtactaatggctcttcctatgcctaaa
agcataccagtcctgttatatcaggatccactcttatgacctcattccac
cccaacacctccctacagtctctgcctccaagtggggtctatgagtgtga
cacagaaacatagactgagatgaaccattatgagaaccattacaattaac
atatgaaagttggctgcagagagactggtatcccttagcctacccggcct
tcattcaaccaggggagcatgctttaaaaaaaaaaaaaagtccacacggt
atgaaactgggagaggtggatactatgcaaatgagacaaaatgatcacat
attccgtttcctttgtactttcctgtaataaactatctcctgtctgtaac
tatccatatgaccctatattattcattgcaaagagacacaagaacctgta
gactctaacagctgcgtcatggtcagcaggcaggagaggagatgaacaca
ggtgcttctgaactcttctgtcctaacaggacactatcatcccttctcac
actggaaattagggatgggtctccactagtgatagtcatttctagggaaa
taca
gaattctctctttagttctgtgcaccattttttattgggttatttcgttt
gttagaatttaacttcttgagtcctttatgtattttggatatcagccctc
tctcagatgtagggttagtgaagatcctttcccaatctattggctgccat
tttgtcctgttggtagtgtccttttccttatagaagcttttcagtttcat
gatgtctcatttattaattattgattctagtgtctgagctattgatgttc
agtaagttgccttctgtgctaatgtgttcgaggctatttcccactttctc
ttctattaggtttagcgtatccagttttatgttgaagtccttgatccact
tggacttgagtcttgtgcagggtgatacatatggatttatttgcattctt
ttacatgcagatatccagttagaccagcactgtttgttgaaggtgctttc
ttttttccactatgtggttttggcttctttgtcaaaaatcaagtatcaag
atgtgtggggttatttctggatttcaattctattccattgatcaacttgt
ctgtttctgtaccaatactatgcagggttttttatatcactattgctctg
tagtacagcttgaagtctgggatggtgatttcctcagaagttcttttact
gttcaggattattttagctatcctgggccttttgcttttccacatgaagt
ttgagaactgccctttcaaggtctataaggaattgtgctggaattttgat
gggaattgcattaaatctgtagattgcttttggtaaaatggctttttttt
tttactatgttaatcctatcaaccatgaacataggatctttacatcttct
gatatctctttcatttctttcttcaagatcttgaaattctgtcatacaga
tcttttacttgtttgctcagagttacacctagattttttatgttattgtg
gctattgtgaaggtgttttcccctagttcttctctgcttgttttcatttc
ctataagggggcctctggaattccttgagttaattatattcaagccactt
gctgaattggtttaccatgtaaagagatttcctgatagccggtaaatagg
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_73479675_73480797
seq2: B6Ng01-110K04.b_48_1151

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCTCCTGCC  50

seq1  TCTGCCTCCTAAGTGCTAGAATAAGAGGCGTGTGCCACCACCACCTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTAAGTGCTAGAATAAGAGGCGTGTGCCACCACCACCTGGAG  100

seq1  GGACACTGGATTCTTGATTTCCTAGCTACAAGATCATTGCCTCAGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGGATTCTTGATTTCCTAGCTACAAGATCATTGCCTCAGGTCTT  150

seq1  GCTGCACCTTAGCCGCAGTGTGCATGGTTGCCCTCACTTGGGAGAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCTTAGCCGCAGTGTGCATGGTTGCCCTCACTTGGGAGAGGAGA  200

seq1  GGAGCAAGCAGAGAATTTTTATAGAAGAAGCCCACTCTTCCATTGTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAGCAGAGAATTTTTATAGAAGAAGCCCACTCTTCCATTGTCCAC  250

seq1  AGTTTAGACCAGGAACAGGCAACTCAGATATTAGCCAGATCTCTGGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGACCAGGAACAGGCAACTCAGATATTAGCCAGATCTCTGGTACT  300

seq1  CCCAGCCTCACAGAGAAGTCTCCTGAAGTATCCCCTAGAGTCACTGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTCACAGAGAAGTCTCCTGAAGTATCCCCTAGAGTCACTGCCAT  350

seq1  GGCCGTTGTCACTGCCTTTTGTGCAGACTGTGGGTTCTGCCACAACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTTGTCACTGCCTTTTGTGCAGACTGTGGGTTCTGCCACAACTGAG  400

seq1  GACCCCAGACTGGCAGCTTCAACAGCCAACATTCAGCTTCCCATAACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGACTGGCAGCTTCAACAGCCAACATTCAGCTTCCCATAACCTT  450

seq1  GAAGTGGAGATCTGTGACCCAAGCGTTGGCTTTCCTTGAGGCCTCATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGAGATCTGTGACCCAAGCGTTGGCTTTCCTTGAGGCCTCATTGG  500

seq1  AGGTCACCCTTCTGTGTACATGTGTACTAATGGCTCTTCCTATGCCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACCCTTCTGTGTACATGTGTACTAATGGCTCTTCCTATGCCTAAA  550

seq1  AGCATACCAGTCCTGTTATATCAGGATCCACTCTTATGACCTCATTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACCAGTCCTGTTATATCAGGATCCACTCTTATGACCTCATTCCAC  600

seq1  CCCAACACCTCCCTACAGTCTCTGCCTCCAAGTGGGGTCTATGAGTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACCTCCCTACAGTCTCTGCCTCCAAGTGGGGTCTATGAGTGTGA  650

seq1  CACAGAAACATAGACTGAGATGAACCATTATGAGAACCATTACAATTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAACATAGACTGAGATGAACCATTATGAGAACCATTACAATTAAC  700

seq1  ATATGAAAGTTGGCTGCAGAGAGACTGGTATCCCTTAGCCTACCCGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAGTTGGCTGCAGAGAGACTGGTATCCCTTAGCCTACCCGGCCT  750

seq1  TCATTCAACCAGGGGAGCATGCTTTAAAAAAAAAAAAAAGTCCACACGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAACCAGGGGAGCATGCTTTAAAAAAAAAAAAAAGTCCACACGGT  800

seq1  ATGAAACTGGGAGAGGTGGATACTATGCAAATGAGACAAAATGATCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTGGGAGAGGTGGATACTATGCAAATGAGACAAAATGATCACAT  850

seq1  ATTCCGTTTCCTTTGTACTTTTCCTGTAATAAACTATCTCCTGTTCTGTA  900
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  ATTCCGTTTCCTTTGTAC-TTTCCTGTAATAAACTATCTCCTG-TCTGTA  898

seq1  ACTATCCATATGACCCTATATTATTCATTGCAAAGAGACACAAGAACCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCATATGACCCTATATTATTCATTGCAAAGAGACACAAGAACCTG  948

seq1  TAGACTCTAACAGCTGCGTCATGGTTCAGCCAGCCAGGAGATGAAGATGA  1000
      |||||||||||||||||||||||| |||| ||| ||||||| | ||||||
seq2  TAGACTCTAACAGCTGCGTCATGG-TCAG-CAGGCAGGAGA-GGAGATGA  995

seq1  ACACAAGGTGCTTCTGAACTTCCTTCTGTCCTAACAAGGACACTATCAAT  1050
      |||| |||||||||||||||  ||||||||||||| ||||||||||||  
seq2  ACAC-AGGTGCTTCTGAACT--CTTCTGTCCTAAC-AGGACACTATCA--  1039

seq1  CCCCCTTCTTCAACCACTTGGAAATTAGGGATGGGTCTCCACTAGTTGAT  1100
        |||||| |||  ||| ||||||||||||||||||||||||||| ||| 
seq2  -TCCCTTC-TCA--CAC-TGGAAATTAGGGATGGGTCTCCACTAG-TGA-  1082

seq1  TAGTCATTTCTTAGGGAAATACA  1123
      |||||||||| ||||||||||||
seq2  TAGTCATTTC-TAGGGAAATACA  1104