BAC Information

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BAC

Clone NameB6Ng01-110M04
Chromosome13 (Build37)
Map Location 113,827,475 - 113,828,457
singlet/doubletsinglet
Overlap geneEG622422
Upstream geneLOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408
Downstream gene2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110M04.bB6Ng01-110M04.g
ACCDH917292DH917293
length802976
definitionDH917292|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M04, 5' end.DH917293|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaactgaggaatctcaaatggctgagaagcacctaaagaaatg
ttcaaagtccttagacatcagagaaatgcaaatcaaaacaaccctgagat
tccaccttacaccaatcagaatggctaagatcaaaacctcaggtaacaat
acatgttggagaggatgtggagaaaaaggaacactcctccattgctgatg
ggattgcaaactgatacaatcactctggaaatcaatctggatgttcctca
gaaaattggaatagatctacctgaagacacagctataccactcttagaaa
tatacccaaacgatgccccaccatgccaaaggggcacgagttccactatg
ttcatagcagccgtatttgtgatagccagaagctacgacagaagaatgga
tactgaaaatgtggttcatttacacaatggaatactactcagctgttaag
aacaaggacatcctgacttttgcaggcagatggatggaactagaaaatat
catcctgagtgaggtaactcagacccaaaagaacatgcatggtatgtact
cactaataagtggctattagccaaaaagaaaagaaaagacaaaaaacata
cagaatacacaagatacagtccacagaattcaaaaggctcaacaagctga
agtgcccaagtgaggatacctcagtcccacttgggagagagaagaaagca
atcacaagtggggagggggggagggacttgggcacttcagcttgttgagc
cttttgaattttggggactgtatcctgggtttctgctagatttatgtcat
at
gaattcacatggtggaaggagaaaactggctccctcagagttcccttgct
ctccgtatccacgccaccacactccagcagctctgcagcagtgtctttct
gttagaaacttagcctcagccactccacagactgtgaaaatccgaacttg
ccagactcgggtaggcagtgttgttagctggctgcgttgggtcaggccag
cagccacagctaccctgccacttccttctggctgggttcttcttgttaat
gaggtgcgctgtcttgcctgtgtgtgatggcttggcagtgtattgttagc
tggttgagtatgtgagcggcaccagctaacatgcgactgctctcctattg
cacacacaatcaccaccagcatgcatttacagctcatgtatgtgctttgc
catgaagaggggtactattatgataacagctattagtggcttggggtgac
acaaggacatatttatagcagtgaaagtactaaccattgttactttaaaa
actcaagtaatattttctgagtcctagcttgacattatcaaagcatttat
aaagttatgtgtttgttgttttaacacaagatttagaataaaatggaaag
ccttgtgtatttgcccaagtttccaactaaatcagtttcatgatagagta
gagcaggtctctccaactttatgtatacaccaagtggagggagaatttgt
gttaactttcaaaatgacccacacgttaaaacatcttcactagaagtatc
tagacaatttgggatatcttggggatgtggtagggatgggcttatttatt
tgggggagacaactcagttcttccctttgtataaaatattgcaaatattt
ttacaatattggaagacattgagatctagtttttaaagaaagagaatagc
tggccataatatatttaaaatacttcctctttctttggaggccgtttgat
tcacggaacgattcaagtgtcatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113827475_113828457
seq2: B6Ng01-110M04.g_69_1044

seq1  GAATTCACATGGTGGAAGGAGAAAACTGGCTCCCTCAGAGTTCCCTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGTGGAAGGAGAAAACTGGCTCCCTCAGAGTTCCCTTGCT  50

seq1  CTCCGTATCCACGCCACCACACTCCAGCAGCTCTGCAGCAGTGTCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTATCCACGCCACCACACTCCAGCAGCTCTGCAGCAGTGTCTTTCT  100

seq1  GTTAGAAACTTAGCCTCAGCCACTCCACAGACTGTGAAAATCCGAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAACTTAGCCTCAGCCACTCCACAGACTGTGAAAATCCGAACTTG  150

seq1  CCAGACTCGGGTAGGCAGTGTTGTTAGCTGGCTGCGTTGGGTCAGGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCGGGTAGGCAGTGTTGTTAGCTGGCTGCGTTGGGTCAGGCCAG  200

seq1  CAGCCACAGCTACCCTGCCACTTCCTTCTGGCTGGGTTCTTCTTGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAGCTACCCTGCCACTTCCTTCTGGCTGGGTTCTTCTTGTTAAT  250

seq1  GAGGTGCGCTGTCTTGCCTGTGTGTGATGGCTTGGCAGTGTATTGTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCGCTGTCTTGCCTGTGTGTGATGGCTTGGCAGTGTATTGTTAGC  300

seq1  TGGTTGAGTATGTGAGCGGCACCAGCTAACATGCGACTGCTCTCCTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGTATGTGAGCGGCACCAGCTAACATGCGACTGCTCTCCTATTG  350

seq1  CACACACAATCACCACCAGCATGCATTTACAGCTCATGTATGTGCTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAATCACCACCAGCATGCATTTACAGCTCATGTATGTGCTTTGC  400

seq1  CATGAAGAGGGGTACTATTATGATAACAGCTATTAGTGGCTTGGGGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGAGGGGTACTATTATGATAACAGCTATTAGTGGCTTGGGGTGAC  450

seq1  ACAAGGACATATTTATAGCAGTGAAAGTACTAACCATTGTTACTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACATATTTATAGCAGTGAAAGTACTAACCATTGTTACTTTAAAA  500

seq1  ACTCAAGTAATATTTTCTGAGTCCTAGCTTGACATTATCAAAGCATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTAATATTTTCTGAGTCCTAGCTTGACATTATCAAAGCATTTAT  550

seq1  AAAGTTATGTGTTTGTTGTTTTAACACAAGATTTAGAATAAAATGGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGTGTTTGTTGTTTTAACACAAGATTTAGAATAAAATGGAAAG  600

seq1  CCTTGTGTATTTGCCCAAGTTTCCAACTAAATCAGTTTCATGATAGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTATTTGCCCAAGTTTCCAACTAAATCAGTTTCATGATAGAGTA  650

seq1  GAGCAGGTCTCTCCAACTTTATGTATACACCAAGTGGAGGGAGAATTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGTCTCTCCAACTTTATGTATACACCAAGTGGAGGGAGAATTTGT  700

seq1  GTTAACTTTCAAAATGACCCACACGTTAAAACATCTTCACTAGAAGTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTTCAAAATGACCCACACGTTAAAACATCTTCACTAGAAGTATC  750

seq1  TAGACAATTTGGGATATCTTGGGGATGTGGTAGGGATGGGCTTATTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATTTGGGATATCTTGGGGATGTGGTAGGGATGGGCTTATTTATT  800

seq1  T-GGGGAGACAACTCAGTTCTTCCATTTTGTATAAAATATTGCAAATATT  849
      | ||||||||||||||||||||||  |||||||||||||||||||||| |
seq2  TGGGGGAGACAACTCAGTTCTTCC-CTTTGTATAAAATATTGCAAATA-T  848

seq1  TTTTACAATAATTGGAAGGACA-TGAGATCTAGTTTATAAAGAAAGAAGA  898
      ||||||||| ||||||| |||| ||||||||||||| ||||||||| |||
seq2  TTTTACAAT-ATTGGAA-GACATTGAGATCTAGTTTTTAAAGAAAG-AGA  895

seq1  AGAGCTGGCCATAAATATTATTTAAAATACTTCCTCATTCTTTGGAAGGC  948
      | |||||||||| |||| |||||||||||||||||| |||||||| ||||
seq2  ATAGCTGGCCAT-AATA-TATTTAAAATACTTCCTCTTTCTTTGG-AGGC  942

seq1  CGTTTGATTCACGGAACAGAGTCAGAGGTCATATG  983
      ||||||||||||||||| || |||   ||||||||
seq2  CGTTTGATTCACGGAAC-GATTCAAGTGTCATATG  976