BAC Information

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BAC

Clone NameB6Ng01-110P03
Chromosome13 (Build37)
Map Location 36,121,975 - 36,170,614
singlet/doubletdoublet
Overlap geneLyrm4
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, LOC100042773
Downstream geneFars2, LOC100041590, LOC666758, Nrn1, F13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110P03.bB6Ng01-110P03.g
ACCDH917423DH917424
length1,0141,091
definitionDH917423|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P03, 5' end.DH917424|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,121,975 - 36,123,002)(36,169,501 - 36,170,614)
sequence
gaattcacctaattttgcccaagtcctcacaagtaacaaaatatacattt
attaagttttgtttttatttataatcttaaatatggcaaagaactcaggt
tgcaacagtgggtgccttgtgcctgcctgccttggtggtggagaaactgg
gcatttagaactaagtcttggtagagaagtcttggtaggtaagtcttggc
agagaaactgggcatttagaactactccatgaaaatgaccttgagaaggc
taacctagttccccagagcctgagtttccttccctgtaaaagagggaacc
aacagcacatactgtgctcctgccatgaggggaggcacagaaacaagtga
acaatgactcgtcactcccattggaacctgtgcttcctaacagggagcgc
atccagattatccctgtaatggcttacacatctattctgaggtgcagtca
gaattggggaatactgttaggctggactcagatttaagaaattagtgatg
ttttagagccactcaagaacacttgaatgcactgaccatgtactcaatga
gtgctgaaacaaagacagagtcttaataattacaaaagaagacacacaga
acttgtctcttagaagcacaacatcccagacatttttgttaaattgcagc
aataaagctgagaacatcttctgcagaatgcaccaattctaaattactgg
ctaaatctagtaaagaaaattacctgcagaacgttattgtgaatgctggg
ggggacctatgtttttttttttttttttttttttttaacctaagctctag
aataaactgtaaggagaaaaaaaaaaatcaacctgcaaattagatattct
agatcttaaagccactaattttaatcaataccagcctggaagtttaaatg
actttctactgagcctctccacccatcaagtaatatcagaaatattgatt
ccatcccacacatcatcttacagttcataaaatatagctatagtaacata
aaatgcatttagtg
gaattcatacatgtctgaaaatgcaggaagatacacaaagtaatgttctt
gctaggtgctttgcctgcacagatttgttttattgttgtttctgctgctg
ctgctgctgttgttgtttaaatcaaatttaccaagaaaatagaggaagag
cccttaaagttgaattctggttatagccattcagtgacaaagatgagggc
ttatctctcccaagaatgccagtctcacagacatttgacattatggtgac
ccttcctgtagatccccatctttttcaggtaaacaaacaggtttggaaaa
tatctcagagaggaagagctctaggctacatatcagtaaaggtcaatacc
aaggtttaaactgaggcttctatcaccatactggtaatacatagtgcctc
aaagtaggatccttcagttgctgcaagggttctgtctgtactgtgctgtg
ctatgttggaactgtacaggttaggcaaactctcaaccactaatgtacac
atcagagcttttaattgcattttaatagaactttataaaaacataggatc
taatacacttctctaaccttgggaaaataagctgttaacaccaagagtca
ggcaatgatagaggcacacagagccccttcttgcttctgtatgcccttga
tccttcagaggacacagagaattgaaaagcacccacttcaagcccttgcg
gtgctcaaaagttcactaccaatagtgccagaaagacaatccttctagag
cagccagtaggctaatgaggtaaacaagagctgaataaaagactactaag
aggatcacatctgaccagtgaagtgacctatggaaagtaaattcaagtcc
tacttcctgagaactgagcaatggccagctcatcttgatcatgtgacacc
tctaaacctttgatctcaaactacatcttgtcagtgctgttttttttttt
tttggcttttttatcttgtacttttatagtgatcagactctgtcaagttt
agagatgaaaactagctgaaatgtgttgcttctacttagtagaaagaaca
cactagactagattggtacataggtgggtgactcgactcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_36121975_36123002
seq2: B6Ng01-110P03.b_47_1060

seq1  GAATTCACCTAATTTTGCCCAAGTCCTCACAAGTAACAAAATATACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAATTTTGCCCAAGTCCTCACAAGTAACAAAATATACATTT  50

seq1  ATTAAGTTTTGTTTTTATTTATAATCTTAAATATGGCAAAGAACTCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTTTGTTTTTATTTATAATCTTAAATATGGCAAAGAACTCAGGT  100

seq1  TGCAACAGTGGGTGCCTTGTGCCTGCCTGCCTTGGTGGTGGAGAAACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGTGGGTGCCTTGTGCCTGCCTGCCTTGGTGGTGGAGAAACTGG  150

seq1  GCATTTAGAACTAAGTCTTGGTAGAGAAGTCTTGGTAGGTAAGTCTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGAACTAAGTCTTGGTAGAGAAGTCTTGGTAGGTAAGTCTTGGC  200

seq1  AGAGAAACTGGGCATTTAGAACTACTCCATGAAAATGACCTTGAGAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTGGGCATTTAGAACTACTCCATGAAAATGACCTTGAGAAGGC  250

seq1  TAACCTAGTTCCCCAGAGCCTGAGTTTCCTTCCCTGTAAAAGAGGGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAGTTCCCCAGAGCCTGAGTTTCCTTCCCTGTAAAAGAGGGAACC  300

seq1  AACAGCACATACTGTGCTCCTGCCATGAGGGGAGGCACAGAAACAAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACATACTGTGCTCCTGCCATGAGGGGAGGCACAGAAACAAGTGA  350

seq1  ACAATGACTCGTCACTCCCATTGGAACCTGTGCTTCCTAACAGGGAGCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGACTCGTCACTCCCATTGGAACCTGTGCTTCCTAACAGGGAGCGC  400

seq1  ATCCAGATTATCCCTGTAATGGCTTACACATCTATTCTGAGGTGCAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATTATCCCTGTAATGGCTTACACATCTATTCTGAGGTGCAGTCA  450

seq1  GAATTGGGGAATACTGTTAGGCTGGACTCAGATTTAAGAAATTAGTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGGAATACTGTTAGGCTGGACTCAGATTTAAGAAATTAGTGATG  500

seq1  TTTTAGAGCCACTCAAGAACACTTGAATGCACTGACCATGTACTCAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGCCACTCAAGAACACTTGAATGCACTGACCATGTACTCAATGA  550

seq1  GTGCTGAAACAAAGACAGAGTCTTAATAATTACAAAAGAAGACACACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAAACAAAGACAGAGTCTTAATAATTACAAAAGAAGACACACAGA  600

seq1  ACTTGTCTCTTAGAAGCACAACATCCCAGACATTTTTGTTAAATTGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTCTTAGAAGCACAACATCCCAGACATTTTTGTTAAATTGCAGC  650

seq1  AATAAAGCTGAGAACATCTTCTGCAGAATGCACCAATTCTAAATTACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCTGAGAACATCTTCTGCAGAATGCACCAATTCTAAATTACTGG  700

seq1  CTAAATCTAGTAAAGAAAATTACCTGCAGAACGTTATTGTGAATGCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTAGTAAAGAAAATTACCTGCAGAACGTTATTGTGAATGCTGGG  750

seq1  GGGGACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCTAAGCTCTAG  800
      |||||||| | |||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCTATGTTTTTTTTTTTTTTTTTTTTTTTTTAACCTAAGCTCTAG  800

seq1  AATAAACTGTAAGGAG-AAAAAAAAAATCAACCCTGCAAATTAGATATTC  849
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  AATAAACTGTAAGGAGAAAAAAAAAAATCAA-CCTGCAAATTAGATATTC  849

seq1  TAGATCTTAAAGCCACTAATTTTAATCAATACCAGCCTGGAAGTTTTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGATCTTAAAGCCACTAATTTTAATCAATACCAGCCTGGAAG-TTTAAA  898

seq1  TGACTTTCTACTGAGCCTCTCCACCCCCATCAAGTAATTATCAGAAATAT  949
      |||||||||||||||||||||||  |||||||||||| ||||||||||||
seq2  TGACTTTCTACTGAGCCTCTCCA--CCCATCAAGTAA-TATCAGAAATAT  945

seq1  TGATTCCATCCCACACATTCAATCTTACAAGTTCATAAAATATTAGCTTA  999
      ||||||||||||||||||   ||||||| ||||||||||||| |||| ||
seq2  TGATTCCATCCCACACAT--CATCTTAC-AGTTCATAAAATA-TAGC-TA  990

seq1  TTAAGTTAACATAAAAATGCAATTTAGTG  1028
      |  || |||||| ||||||| ||||||||
seq2  T--AG-TAACAT-AAAATGC-ATTTAGTG  1014

seq1: chr13_36169501_36170614
seq2: B6Ng01-110P03.g_67_1157 (reverse)

seq1  TTGAGTCGAGTCACCCACCTATGTAACCAATTCTTAAGTCTAGTGTGTTC  50
      |||||||||||||||||||||||| ||||| |||  ||||||||||||||
seq2  TTGAGTCGAGTCACCCACCTATGT-ACCAA-TCT--AGTCTAGTGTGTTC  46

seq1  TATCCTACTAAGTAGAAGC-ACACATTTTCAGCTAAGTTTTTTCAATCTC  99
      | | ||||||||||||||| ||||| |||||||| ||||||    |||||
seq2  T-TTCTACTAAGTAGAAGCAACACA-TTTCAGCT-AGTTTT---CATCTC  90

seq1  TAAAACTTGAACAGAGTCTGAATCACTATAAAAGTAACAAGATAAAAAAG  149
      | ||||||| |||||||||| |||||||||||||| ||||||||||||||
seq2  T-AAACTTG-ACAGAGTCTG-ATCACTATAAAAGT-ACAAGATAAAAAAG  136

seq1  CCCAAAAAAAAAAAAAAAACAGCACTGGAACAAAGATGTAGTTTGGAGAT  199
      ||   ||||||||||||||||||||||  || |||||||||||| |||||
seq2  CC---AAAAAAAAAAAAAACAGCACTG--AC-AAGATGTAGTTT-GAGAT  179

seq1  CAAAGGTTTTAGAGGGTTGTCACATGATCAAGATGAGCTGGCCATTGCTC  249
      |||||| ||||||||  |||||||||||||||||||||||||||||||||
seq2  CAAAGG-TTTAGAGG--TGTCACATGATCAAGATGAGCTGGCCATTGCTC  226

seq1  AGTTCTCAGGAAGTAGGACTTGAATTTACTTTCCATAGGTCACTTCACTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGGAAGTAGGACTTGAATTTACTTTCCATAGGTCACTTCACTG  276

seq1  GTCAGATGTGATCCTCTTAGTAGTCTTTTATTCAGCTCTTGTTTACCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATGTGATCCTCTTAGTAGTCTTTTATTCAGCTCTTGTTTACCTCA  326

seq1  TTAGCCTACTGGCTGCTCTAGAAGGATTGTCTTTCTGGCACTATTGGTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTACTGGCTGCTCTAGAAGGATTGTCTTTCTGGCACTATTGGTAG  376

seq1  TGAACTTTTGAGCACCGCAAGGGCTTGAAGTGGGTGCTTTTCAATTCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTGAGCACCGCAAGGGCTTGAAGTGGGTGCTTTTCAATTCTCT  426

seq1  GTGTCCTCTGAAGGATCAAGGGCATACAGAAGCAAGAAGGGGCTCTGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCTGAAGGATCAAGGGCATACAGAAGCAAGAAGGGGCTCTGTGT  476

seq1  GCCTCTATCATTGCCTGACTCTTGGTGTTAACAGCTTATTTTCCCAAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTATCATTGCCTGACTCTTGGTGTTAACAGCTTATTTTCCCAAGGT  526

seq1  TAGAGAAGTGTATTAGATCCTATGTTTTTATAAAGTTCTATTAAAATGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGTGTATTAGATCCTATGTTTTTATAAAGTTCTATTAAAATGCA  576

seq1  ATTAAAAGCTCTGATGTGTACATTAGTGGTTGAGAGTTTGCCTAACCTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGCTCTGATGTGTACATTAGTGGTTGAGAGTTTGCCTAACCTGT  626

seq1  ACAGTTCCAACATAGCACAGCACAGTACAGACAGAACCCTTGCAGCAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCAACATAGCACAGCACAGTACAGACAGAACCCTTGCAGCAACT  676

seq1  GAAGGATCCTACTTTGAGGCACTATGTATTACCAGTATGGTGATAGAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATCCTACTTTGAGGCACTATGTATTACCAGTATGGTGATAGAAGC  726

seq1  CTCAGTTTAAACCTTGGTATTGACCTTTACTGATATGTAGCCTAGAGCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTAAACCTTGGTATTGACCTTTACTGATATGTAGCCTAGAGCTC  776

seq1  TTCCTCTCTGAGATATTTTCCAAACCTGTTTGTTTACCTGAAAAAGATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTGAGATATTTTCCAAACCTGTTTGTTTACCTGAAAAAGATGG  826

seq1  GGATCTACAGGAAGGGTCACCATAATGTCAAATGTCTGTGAGACTGGCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTACAGGAAGGGTCACCATAATGTCAAATGTCTGTGAGACTGGCAT  876

seq1  TCTTGGGAGAGATAAGCCCTCATCTTTGTCACTGAATGGCTATAACCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGAGAGATAAGCCCTCATCTTTGTCACTGAATGGCTATAACCAGA  926

seq1  ATTCAACTTTAAGGGCTCTTCCTCTATTTTCTTGGTAAATTTGATTTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTTTAAGGGCTCTTCCTCTATTTTCTTGGTAAATTTGATTTAAA  976

seq1  CAACAACAGCAGCAGCAGCAGCAGAAACAACAATAAAACAAATCTGTGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAGCAGCAGCAGCAGCAGAAACAACAATAAAACAAATCTGTGCA  1026

seq1  GGCAAAGCACCTAGCAAGAACATTACTTTGTGTATCTTCCTGCATTTTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCACCTAGCAAGAACATTACTTTGTGTATCTTCCTGCATTTTCA  1076

seq1  GACATGTATGAATTC  1114
      |||||||||||||||
seq2  GACATGTATGAATTC  1091