BAC Information

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BAC

Clone NameB6Ng01-111E23
Chromosome13 (Build37)
Map Location 13,542,247 - 13,703,626
singlet/doubletdoublet
Overlap geneNid1, Lyst
Upstream geneLgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960
Downstream geneLOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1, Mrpl32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111E23.bB6Ng01-111E23.g
ACCDH917686DH917687
length1,1161,068
definitionDH917686|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E23, 5' end.DH917687|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,702,511 - 13,703,626)(13,542,247 - 13,543,318)
sequence
gaattcttcgtagagaactgaggcacattactgctcgcctttcctgtgtg
taaatatctaccaatattttaagatcatctctagaattttgtgggaataa
tgtcaagttcactaaaatctatggaatctgcattcccttaaattttcaaa
cactgcacttccacagcttcttacaagttttcatgtttattgcaattcct
caaagattaccagtttagccaaaacattaacaaatctgcatggaatctga
ccatgaggtgtgaattcatctagactagccagaggtcctagatctcctct
cttgccttgggcttcaattttcttttatgtttcttactttcatcttcatt
agtcggcctacagatcattctctcctagtcagagaaaacgaagaatggaa
gctgagaactttttcttattctttgaattcaattacagggtcagtttgtt
aacaatttatttgtagaatgtgtttttgagtcttgtttatgaatattata
tggtttcatatccttcttccttctgcacatgctattttaaaatcagtcta
tttgcctcatttattttcctatctctttgtccttcatgtatttccagttg
ttccattaaaaacactatgactgctatatgattacttttgtttccagagt
ctatatccatggcatcttatttatattttctttaaaccttacaaacttat
tttttattttaattttattattattgtatttgaacatatgcctttgttat
ttttctattgttgctaagtgacactatgaccaaggcaacttaacagacaa
gtttcttggggcttacggtttcaaagggtgagcccatggcatcacgacta
gagtatggcagtaggcagcagcatggctcaggaacagaatctagcagctt
atatctgatccacaagcagaggcagaaaagagtgctaactaggaatggta
tggtcttctccaacttcaagctcacctccctactttgacccccagtgacg
tatctccttctctcaaggtcataacttctttctttccaacagtttcatca
ttcaagaacaagttattcaatattgagccttattggcattcattctctat
caaaccatgtttgcac
gaattcacggctttcaggtttgtgtgttcagttctttgatcactgaaccc
tctccccagtggccctctcctcttctccttattcttgttgctgatgagtt
tttaaaagatttattatattcttgtgtgtgtgtgtgtgtgtgtatgcgta
tgcatgcgcgtgcacgtgcgcgcgcgcgtgcgctactgaatgcagttacc
ctcagaggccagaagagggtggctggagttacagctaggtatgagcttcc
tgacatggcttctgagaattacactttacagtatcagtgtgtgctcttaa
ccactgagccatctctctaaccttatgtgcagctccgatatgttacttgg
gggacagattggaaggagtggccgtccagagaaggaccagagtcagctga
tgctcagtattgagctttgtatactaagagagggagagatcaggatttta
aatatgtatatttttttaagcttttgttttaaggggtgatcccagccttc
aaatgctgggattacatgagagagttagtacactcagtttgagaatttgc
gttttgatattgagtttcaaagaaacaccaccaacaaaagatgaacaaaa
accatcatcatcatcatcaacaaaacccaaccaaaccaaatacatagaac
ccctccctcccaagagcaacacaaacctttatactaataccacacctatc
cagatcagtagttccttaaccaccaaagttatgctcaagctgcttaaaat
tcttcaatatctagggggtgggggtgcgagccctttggtcccagcactca
ggaagccagtagtcagacagacctcttaggagttcaagcatccttggttc
ttcagagcaatttccaggacagccaggaggttacacagagtttttctgcc
tttgattaaactaaaccaagacaaacaaattaatcaaaaccacacccaga
aaaaaatccagaaaaattttcttgatattccaagctgcctttacagccta
tttagcagaaaatcagaaaccgagctccaggaattgtttgggtcttcaca
tttgttcactctggttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13702511_13703626
seq2: B6Ng01-111E23.b_46_1161 (reverse)

seq1  GTGCATACATGGTTTGGATGAGAATGATTGCCA--TAGGCTCATATTTGA  48
      ||||| ||||||||||   |||||||| |||||   |||||||   ||||
seq2  GTGCAAACATGGTTTGATAGAGAATGAATGCCAATAAGGCTCAATATTGA  50

seq1  ATACTTGGTTCTTGATTGATGAAACTGTTTGGAAAGAA--GAGGTATGGA  96
      |||  | |||||||| ||||||||||| ||||||||||   || ||||  
seq2  ATAACTTGTTCTTGAATGATGAAACTG-TTGGAAAGAAAGAAGTTATGAC  99

seq1  CTTGAGAG-AGGAGATACGTCACTGGGGGTCAGAGTAGGGAGGTGAGCTT  145
      |||||||| ||||||||||||||||||||||| ||||||||||||||| |
seq2  CTTGAGAGAAGGAGATACGTCACTGGGGGTCAAAGTAGGGAGGTGAGC-T  148

seq1  TGAAGTTGGAGAAGACCATACCATTCCTAGTTAGCACTC-TTTCTGCCTC  194
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  TGAAGTTGGAGAAGACCATACCATTCCTAGTTAGCACTCTTTTCTGCCT-  197

seq1  CTGCTTGTGGATCAGATATAAGCTGCTAGATTCTGTTCCTGGGCCATGCC  244
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  CTGCTTGTGGATCAGATATAAGCTGCTAGATTCTGTTCCTGAGCCATG-C  246

seq1  TGCCTGCCTACTGCCATACTCCTAGTCGTGATGGCCATGGGCTCACCCTT  294
      || ||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  TG-CTGCCTACTGCCATACT-CTAGTCGTGAT-GCCATGGGCTCACCCTT  293

seq1  TGAAACCGTAAGCCCCAAGAAACTTGTCTG-TAAGTTGCCTTGGTCATAG  343
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAAACCGTAAGCCCCAAGAAACTTGTCTGTTAAGTTGCCTTGGTCATAG  343

seq1  TGTCACTTAGCAACAATAGAAAAATAACAAAGGCATATGTTCAAATACAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTAGCAACAATAGAAAAATAACAAAGGCATATGTTCAAATACAA  393

seq1  TAATAATAAAATTAAAATAAAAAATAAGTTTGTAAGGTTTAAAGAAAATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAAAATTAAAATAAAAAATAAGTTTGTAAGGTTTAAAGAAAATA  443

seq1  TAAATAAGATGCCATGGATATAGACTCTGGAAACAAAAGTAATCATATAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGATGCCATGGATATAGACTCTGGAAACAAAAGTAATCATATAG  493

seq1  CAGTCATAGTGTTTTTAATGGAACAACTGGAAATACATGAAGGACAAAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATAGTGTTTTTAATGGAACAACTGGAAATACATGAAGGACAAAGA  543

seq1  GATAGGAAAATAAATGAGGCAAATAGACTGATTTTAAAATAGCATGTGCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAAAATAAATGAGGCAAATAGACTGATTTTAAAATAGCATGTGCA  593

seq1  GAAGGAAGAAGGATATGAAACCATATAATATTCATAAACAAGACTCAAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAAGGATATGAAACCATATAATATTCATAAACAAGACTCAAAA  643

seq1  ACACATTCTACAAATAAATTGTTAACAAACTGACCCTGTAATTGAATTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCTACAAATAAATTGTTAACAAACTGACCCTGTAATTGAATTCA  693

seq1  AAGAATAAGAAAAAGTTCTCAGCTTCCATTCTTCGTTTTCTCTGACTAGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAGAAAAAGTTCTCAGCTTCCATTCTTCGTTTTCTCTGACTAGG  743

seq1  AGAGAATGATCTGTAGGCCGACTAATGAAGATGAAAGTAAGAAACATAAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGATCTGTAGGCCGACTAATGAAGATGAAAGTAAGAAACATAAA  793

seq1  AGAAAATTGAAGCCCAAGGCAAGAGAGGAGATCTAGGACCTCTGGCTAGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTGAAGCCCAAGGCAAGAGAGGAGATCTAGGACCTCTGGCTAGT  843

seq1  CTAGATGAATTCACACCTCATGGTCAGATTCCATGCAGATTTGTTAATGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGAATTCACACCTCATGGTCAGATTCCATGCAGATTTGTTAATGT  893

seq1  TTTGGCTAAACTGGTAATCTTTGAGGAATTGCAATAAACATGAAAACTTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTAAACTGGTAATCTTTGAGGAATTGCAATAAACATGAAAACTTG  943

seq1  TAAGAAGCTGTGGAAGTGCAGTGTTTGAAAATTTAAGGGAATGCAGATTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCTGTGGAAGTGCAGTGTTTGAAAATTTAAGGGAATGCAGATTC  993

seq1  CATAGATTTTAGTGAACTTGACATTATTCCCACAAAATTCTAGAGATGAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTTTAGTGAACTTGACATTATTCCCACAAAATTCTAGAGATGAT  1043

seq1  CTTAAAATATTGGTAGATATTTACACACAGGAAAGGCGAGCAGTAATGTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATATTGGTAGATATTTACACACAGGAAAGGCGAGCAGTAATGTG  1093

seq1  CCTCAGTTCTCTACGAAGAATTC  1116
      |||||||||||||||||||||||
seq2  CCTCAGTTCTCTACGAAGAATTC  1116

seq1: chr13_13542247_13543318
seq2: B6Ng01-111E23.g_68_1135

seq1  GAATTCA-GGCTTTCAGGTTTGTGTGTTCAGTTCTTTGATCACTGAACCC  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGCTTTCAGGTTTGTGTGTTCAGTTCTTTGATCACTGAACCC  50

seq1  TCTCCCCAGTGGCCCTCTCCTCTTCTCCTTATTCTTGTTGCTGATGAGTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGTGGCCCTCTCCTCTTCTCCTTATTCTTGTTGCTGATGAGTT  100

seq1  TTTAAAAGATTTATTATATTCTTGTGTGTGTGTGTGTGTGTGTATGCGTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGATTTATTATATTCTTGTGTGTGTGTGTGTGTGTGTATGCGTA  150

seq1  TGCATGCGCGTGCACGTGCGCGCGCGCGTGCGCTACTGAATGCAGTTACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCGCGTGCACGTGCGCGCGCGCGTGCGCTACTGAATGCAGTTACC  200

seq1  CTCAGAGGCCAGAAGAGGGTGGCTGGAGTTACAGCTAGGTATGAGCTTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGCCAGAAGAGGGTGGCTGGAGTTACAGCTAGGTATGAGCTTCC  250

seq1  TGACATGGCTTCTGAGAATTACACTTTACAGTATCAGTGTGTGCTCTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGCTTCTGAGAATTACACTTTACAGTATCAGTGTGTGCTCTTAA  300

seq1  CCACTGAGCCATCTCTCTAACCTTATGTGCAGCTCCGATATGTTACTTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCCATCTCTCTAACCTTATGTGCAGCTCCGATATGTTACTTGG  350

seq1  GGGACAGATTGGAAGGAGTGGCCGTCCAGAGAAGGACCAGAGTCAGCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGATTGGAAGGAGTGGCCGTCCAGAGAAGGACCAGAGTCAGCTGA  400

seq1  TGCTCAGTATTGAGCTTTGTATACTAAGAGAGGGAGAGATCAGGATTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTATTGAGCTTTGTATACTAAGAGAGGGAGAGATCAGGATTTTA  450

seq1  AATATGTATATTTTTTTAAGCTTTTGTTTTAAGGGGTGATCCCAGCCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTATATTTTTTTAAGCTTTTGTTTTAAGGGGTGATCCCAGCCTTC  500

seq1  AAATGCTGGGATTACATGAGAGAGTTAGTACACTCAGTTTGAGAATTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGGATTACATGAGAGAGTTAGTACACTCAGTTTGAGAATTTGC  550

seq1  GTTTTGATATTGAGTTTCAAAGAAACACCACCAACAAAAGATGAACAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATATTGAGTTTCAAAGAAACACCACCAACAAAAGATGAACAAAA  600

seq1  ACCATCATCATCATCATCAACAAAACCCAAACCAAACCAAATACATAGAA  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCATCATCATCATCATCAACAAAACCC-AACCAAACCAAATACATAGAA  649

seq1  CCCCTCCCTCCCAAGAGCAACACAAACCATTATACTAATACCACACCTAT  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCCTCCCTCCCAAGAGCAACACAAACCTTTATACTAATACCACACCTAT  699

seq1  CCAGATCAGTAGTTCCTT-ACCACC-AAGTTATGCTCAAGCTGCTTAAAA  747
      |||||||||||||||||| |||||| |||||||||||||||||||| |||
seq2  CCAGATCAGTAGTTCCTTAACCACCAAAGTTATGCTCAAGCTGCTT-AAA  748

seq1  ATTCTTCAATATCTAGGGGGT-GGGGTGCGAG-CCTTTAGTCCCAGCACT  795
      ||||||||||||||||||||| |||||||||| ||||| |||||||||||
seq2  ATTCTTCAATATCTAGGGGGTGGGGGTGCGAGCCCTTTGGTCCCAGCACT  798

seq1  CAGGAAG-CAG-AGTCAGACAGACCTC-TAAGAGTTCAAGCATCC-TGGT  841
      ||||||| ||| ||||||||||||||| || |||||||||||||| ||||
seq2  CAGGAAGCCAGTAGTCAGACAGACCTCTTAGGAGTTCAAGCATCCTTGGT  848

seq1  TCTTCAGAGCAAGTTCCAGGACAGCCAG--AGATACACAGAGTTTTTCTG  889
      |||||||||||| |||||||||||||||   | |||||||||||||||||
seq2  TCTTCAGAGCAATTTCCAGGACAGCCAGGAGGTTACACAGAGTTTTTCTG  898

seq1  CCTTGAATAAAACTAAAAACAAAACAAAACAAAATAAACAAAACCACACA  939
      ||||  || ||||| ||| ||| || ||||||| ||| ||||||||||| 
seq2  CCTTTGATTAAACT-AAACCAAGAC-AAACAAATTAATCAAAACCACACC  946

seq1  CAAGAAAAAAAATCAAAGAAAAAAATTCTTGAATATTCCCAAAGCTGCCT  989
      ||   |||||||||  |||||||  |||||| |||||||  |||||||| 
seq2  CA--GAAAAAAATC-CAGAAAAATTTTCTTG-ATATTCC--AAGCTGCC-  989

seq1  TTTACAAGCCTTATTAAGCCAGAGATTCAGAAA-CGAGCTCACAGGACAA  1038
      ||||| |||| |||| || |||| | ||||||| ||||||| ||||  ||
seq2  TTTAC-AGCC-TATTTAG-CAGAAAATCAGAAACCGAGCTC-CAGG--AA  1033

seq1  TTG-TTGTGTCTTCCCCTTTGTTCACTCTTGTTAA  1072
      ||| ||| |||||| | |||||||||||| |||||
seq2  TTGTTTGGGTCTTCACATTTGTTCACTCTGGTTAA  1068