BAC Information

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BAC

Clone NameB6Ng01-112J08
Chromosome8 (Build37)13 (Build37)
Map Location 87,830,465 - 87,831,585119,064,292 - 119,064,361
singlet/doubletsingletsinglet
Overlap geneOrc6l
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35
Downstream geneD830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112J08.bB6Ng01-112J08.g
ACCDH918610DH918611
length1,116328
definitionDH918610|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J08, 5' end.DH918611|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,830,465 - 87,831,585)(119,064,292 - 119,064,361)
sequence
gaattccaggccaacgtgggctacacattgataccatctcacaacaacaa
caaaacagccttttaagcaataattaaaggaagtaacagaagtgtgagta
aaaatatatctggtggccaaagaatacagatattactaatttttagaggt
atatctggtacagcatgacatgtctttaatcccagcactcagagacaggg
ccaggctgatctctgagttccaggccagcctggtatacaaagcaagttct
agatcagtcagaaccacacagtgagaatttgtttaaaaaaaaaaagagcg
agagaagagaaagaaaagtgtgaatgttggtaactaaactgtacctgggt
tcatattttactttgccagtgttaaaatctttaggcaaattaaacaattc
aagcagactgactcataaattggacagcttcaaatctaaaattggttccg
aaaacaccacccagtggttaaacagaagtcctaatagagttaattaggtt
ataaggagatagaaaacatccaattgagtcaaactactcatttactttat
ttaaggatatctagtgtgaggtccctgtttggataaccagaaaggtagct
tttgtgatgggctgctttttttttttttttcttcctctaaaaatatattt
ccaaattaagttctagttacctacataggaactttagctacaagaacaat
cttgatactaatggctaattgtttaacactacctactggctgtgtgcatt
tgaaaaggtgataaaatttctacaagcttcattctcctaatctgtaaaat
gtgactaatgttagcataatgttgtgatggggattacttgaggtacaagg
ttgatgtcttagagtgcttagagtataggaagagaaaagtgagagctgcc
ttgttaaacctgcacttctagggtcttaatcttttactttaattgaagta
atacttgccaatttttacttttatgccatttataaacttgtttaaattgc
atttgctgacttctcccacagaaatagaagtatagatcctttcattaact
acttaagatgaagatctgacccaggattattgaaaaatggaaaggaagat
tgaaatggctgccaaa
agtcttgctcagcatctcaatataggaatagaatgtagccagattctttg
ccacaatttaacaaacatggcttgtaactagttcccagtagagagtcctt
gctctcctctgaaaactcatgagctgagcttggtcttccaaactgtcacc
agaatggcccgttagtctctgtttaactagggcttcttttgtctgcagct
ccacagtctgcctaagaatcacatggttaagtttatctatagttcatgtc
tgtgtgtgtgcctatatgtgtggttgtgtgtctgtgtgtgtgtgtgagtg
agagagagagaaagagagagagagaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87830465_87831585
seq2: B6Ng01-112J08.b_44_1159

seq1  GAATTCCAGGCCAACGTGGGCTACACATTGATACCATCTCACAACAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAACGTGGGCTACACATTGATACCATCTCACAACAACAA  50

seq1  CAAAACAGCCTTTTAAGCAATAATTAAAGGAAGTAACAGAAGTGTGAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGCCTTTTAAGCAATAATTAAAGGAAGTAACAGAAGTGTGAGTA  100

seq1  AAAATATATCTGGTGGCCAAAGAATACAGATATTACTAATTTTTAGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATCTGGTGGCCAAAGAATACAGATATTACTAATTTTTAGAGGT  150

seq1  ATATCTGGTACAGCATGACATGTCTTTAATCCCAGCACTCAGAGACAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGTACAGCATGACATGTCTTTAATCCCAGCACTCAGAGACAGGG  200

seq1  CCAGGCTGATCTCTGAGTTCCAGGCCAGCCTGGTATACAAAGCAAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGATCTCTGAGTTCCAGGCCAGCCTGGTATACAAAGCAAGTTCT  250

seq1  AGATCAGTCAGAACCACACAGTGAGAATTTGTTTAAAAAAAAAAAGAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGTCAGAACCACACAGTGAGAATTTGTTTAAAAAAAAAAAGAGCG  300

seq1  AGAGAAGAGAAAGAAAAGTGTGAATGTTGGTAACTAAACTGTACCTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGAAAGAAAAGTGTGAATGTTGGTAACTAAACTGTACCTGGGT  350

seq1  TCATATTTTACTTTGCCAGTGTTAAAATCTTTAGGCAAATTAAACAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTACTTTGCCAGTGTTAAAATCTTTAGGCAAATTAAACAATTC  400

seq1  AAGCAGACTGACTCATAAATTGGACAGCTTCAAATCTAAAATTGGTTCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACTGACTCATAAATTGGACAGCTTCAAATCTAAAATTGGTTCCG  450

seq1  AAAACACCACCCAGTGGTTAAACAGAAGTCCTAATAGAGTTAATTAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCACCCAGTGGTTAAACAGAAGTCCTAATAGAGTTAATTAGGTT  500

seq1  ATAAGGAGATAGAAAACATCCAATTGAGTCAAACTACTCATTTACTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGATAGAAAACATCCAATTGAGTCAAACTACTCATTTACTTTAT  550

seq1  TTAAGGATATCTAGTGTGAGGTCCCTGTTTGGATAACCAGAAAGGTAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATATCTAGTGTGAGGTCCCTGTTTGGATAACCAGAAAGGTAGCT  600

seq1  TTTGTGATGGGCTGCTTTTTTTTTTTTTTTCTTCCTCTAAAAATATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATGGGCTGCTTTTTTTTTTTTTTTCTTCCTCTAAAAATATATTT  650

seq1  CCAAATTAAGTTCTAGTTACCTACATAGGAACTCTAGCTACAAGAACAAT  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCAAATTAAGTTCTAGTTACCTACATAGGAACTTTAGCTACAAGAACAAT  700

seq1  CTTGATACTAATGGCTAATTGTTTAACACTACCTACTGGCTGTGTGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATACTAATGGCTAATTGTTTAACACTACCTACTGGCTGTGTGCATT  750

seq1  TGAAAAGGTGATAAAATTTCTACAAGCTTCATTCTCCTAATCTGTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGTGATAAAATTTCTACAAGCTTCATTCTCCTAATCTGTAAAAT  800

seq1  GTGACTAATGTTAGCATAATGTTGTGAT-GGGATTACTTGAGGTACAAGG  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGACTAATGTTAGCATAATGTTGTGATGGGGATTACTTGAGGTACAAGG  850

seq1  TTGATGTCTTAGAGTGCTTAGAGTATAGG-AGAGAAAAGTGAGAGCTGCC  898
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGATGTCTTAGAGTGCTTAGAGTATAGGAAGAGAAAAGTGAGAGCTGCC  900

seq1  ATGTTACA-CTGCAC-TCTAGGGTCTTAATCTCTTACCTTAATTGAAGTA  946
       ||||| | |||||| |||||||||||||||| |||| ||||||||||| 
seq2  TTGTTAAACCTGCACTTCTAGGGTCTTAATCTTTTACTTTAATTGAAGT-  949

seq1  AATACTTGCCAATTTTTACTTTTATGCCATTTATAAACTTGTTTAAAATT  996
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATACTTGCCAATTTTTACTTTTATGCCATTTATAAACTTGTTT-AAATT  998

seq1  GCATTTGCTGACTTTCTCTCACAGAAATAGAAGTAATAGAAACCCTTCAT  1046
      |||||||||||| ||||| ||||||||||||||| |||| | || |||||
seq2  GCATTTGCTGAC-TTCTCCCACAGAAATAGAAGT-ATAG-ATCCTTTCAT  1045

seq1  AAACTACCTAAAGATGAAGATCTGACACAGGATTA-TGAAGAATGGAAAA  1095
       ||||| || |||||||||||||||| |||||||| |||| ||||| |||
seq2  TAACTA-CTTAAGATGAAGATCTGACCCAGGATTATTGAAAAATGG-AAA  1093

seq1  GGAAGATTTTGGAAAATGCTGCCAAA  1121
      ||||||||   ||||  |||||||||
seq2  GGAAGATT---GAAATGGCTGCCAAA  1116

seq1: chr13_119064292_119064361
seq2: B6Ng01-112J08.g_322_399 (reverse)

seq1  CATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACA  50
      |||||||||||||||| |||||||||||| |||||||||||||||| |||
seq2  CATTCTCTCTCTCTCTTTCTCTCTCTCTCACTCACACACACACACAGACA  50

seq1  CACA--CACACA------CACACACACA  70
      ||||  ||||||      ||||||||||
seq2  CACAACCACACATATAGGCACACACACA  78