BAC Information

Click to search

BAC

Clone NameB6Ng01-112L01
Chromosome13 (Build37)
Map Location 96,843,332 - 96,958,105
singlet/doubletdoublet
Overlap geneSv2c
Upstream genePde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2
Downstream geneLOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112L01.bB6Ng01-112L01.g
ACCDH918688DH918689
length1,1101,132
definitionDH918688|Mus musculus domesticus DNA, BAC clone: B6Ng01-112L01, 5' end.DH918689|Mus musculus domesticus DNA, BAC clone: B6Ng01-112L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,956,990 - 96,958,105)(96,843,332 - 96,844,482)
sequence
gaattcatgtaggacatgctaccatgtagcatgagaaaagtgaagtttac
agatgctaatattttgccaaaatcatattttagaactcaccttgagttca
aacctatgtatcccttaacaccatgcttttaagtatcattccatatgacc
taaggctattgtatctaaccttattagatccaacagctattctaatgttc
ttttattattctactgtcaaaattcatatatattactgacaaccctgtac
ttttataacactctcagcagtctgtgtatattaaaaatcagagatgaatg
gagaataatttatgatgcaatcatatagatttagatatgcaaataagaaa
gcatgaacacacctggaggctagtgtctccaagtagtcacatgtacttgc
gtgtacatgtaaactcattatatgagatactattaaaagcactgtagacg
tggataacgtgactttccaatatagaaacctttggggaaatctctgagca
aaaggcagttttccatgcatttttataatagcttagttcttgaaaatttt
ataaatattaaaaccatatcctcacattttgttcgatatatatatatata
tatatatccattatattattcatacacatacatgaatgcaaagtgacagt
ttagccagtggaggatttcaactattttaacagcaataataatagcaaca
aaccacactaaacccagaaaaatgcaacaaccatcagcacatgttttcga
aacattgcctaaggtgtagtaccacctccagtaaacatgactacattgga
aaagccctcacgagatttacaagttagttctgtaaaaatcacatctttca
ctcttgaatattcatctttctatatacagtcaggtgaggctaacaaagga
ataaagcagatccactcagagttctgaagatgaagggttgacacttcttg
aatggtcacacacacacacacacacacacacacacacatatcgtcacaca
ctatggcagtttcatgagaatggctccacagggtataaattgaatactgg
ttgccagggatgcactatttgaaatgataagtagtggtgccttgtggacg
aagggtgtca
gaattcatcacaagaagggagcccagaagataaaagaacagctatagatg
gggaccatgtcccagtgagtaaagaagctaaaacgttgaagccttcaatc
tatggtgtatcaattccaaactcttaaatcgttttttttttttctgacca
taggaaaaaaattaagctgctgatgtaaggcttttaactgaggcacggtc
attagtcttgtttgagtctagagaaacagaattacagtaatggaccaaaa
ggtcaaatcgccagcatccttagcccacttggctacgcgcctggcattga
tcttcatgtcttggatgtgtgccatggggtcctggctggagagttaagct
catacgcactttgctgtttatcaacagatctaattattcagcttcttaca
ccacagcacagagcatcaaaggatgaatcaggcacagttcagatggcagc
acggacaggagagaaagggcacggagggaaaggatagcactgaggctgtg
ctgagccatcagggcgtggtcttagttgtgtgtctgttttatagtgtgtt
aacatttcaggaaacaaaagctcaccatgttagttaccaccgttgggagg
caattcccatctctcccactaagctacaccccaccctaagaggtttgtaa
tttgtttatggttttcttcatttgtttttgcttttgcttttttgagacat
ttagaaaagtatgtaaatcacattgacttccatagttctagcaaaagagc
tttggctctaacagcttattttatcctcaccccctaaaaacctccaaaaa
gttctcatttagcaaaaaattctaccagcaagtgacatttttatgattat
ctgattccacataaattaataattaactgctgaatatttgaggtcttatg
ttagccccctctggcttttagaaacatatttcattgaaccaatccttcct
tcaatgctgcccagggaaagaaaccaagtcaccatctggcatattcatga
gagtcaaatagtaatcaggccctgagtagtttgaattgcttaggacgctg
cagaggagccatgactgactaaaccagagcccatctgatcctgattcttg
gaagcttcttgcaacagcaagaaagagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96956990_96958105
seq2: B6Ng01-112L01.b_46_1155 (reverse)

seq1  TGACACACTTCGTCCAACAAGGCACACCTACTTATCATTTCAAATAGTGC  50
      |||||| |||||||| |||||||||  |||||||||||||||||||||||
seq2  TGACACCCTTCGTCC-ACAAGGCACCACTACTTATCATTTCAAATAGTGC  49

seq1  CATTCCCTGGCAACCAAGTATTCAAATTTATAACCCTGTGGGAGCCATTC  100
         |||||||||||| ||||||| ||||||| ||||||| ||||||||||
seq2  --ATCCCTGGCAACC-AGTATTC-AATTTAT-ACCCTGT-GGAGCCATTC  93

seq1  TCATTGAAACTGCCATAGTGTGTGACGATATGTGTGTGTGTGTGTGTGTG  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-TGAAACTGCCATAGTGTGTGACGATATGTGTGTGTGTGTGTGTGTG  142

seq1  TGTGTGTGTGTGACCATTCAAGAAGTGTCAACCCTTCATCTTCAGAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGACCATTCAAGAAGTGTCAACCCTTCATCTTCAGAACTC  192

seq1  TGAGTGGGTCTGCTTTATTCCTTTGTTAGCCTCACCTGACTGTATATAGG  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGTGGATCTGCTTTATTCCTTTGTTAGCCTCACCTGACTGTATATAGA  242

seq1  AAGATGAATATTC-AGAGTG-AAGATGTGATTTTTACAGAACTAACTTGT  298
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  AAGATGAATATTCAAGAGTGAAAGATGTGATTTTTACAGAACTAACTTGT  292

seq1  AAATCTCGTGAGGGCTTTTCCAATGTAGTCATGTTTACTGGAGGTGGTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCGTGAGGGCTTTTCCAATGTAGTCATGTTTACTGGAGGTGGTAC  342

seq1  TACACCTTAGGCAATGTTTCGAAAACATGTGCTGATGGTTGTTGCATTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTAGGCAATGTTTCGAAAACATGTGCTGATGGTTGTTGCATTTT  392

seq1  TCTGGGTTTAGTGTGGTTTGTTGCTATTATTATTGCTGTTAAAATAGTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTAGTGTGGTTTGTTGCTATTATTATTGCTGTTAAAATAGTTG  442

seq1  AAATCCTCCACTGGCTAAACTGTCACTTTGCATTCATGTATGTGTATGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCCACTGGCTAAACTGTCACTTTGCATTCATGTATGTGTATGAA  492

seq1  TAATATAATGGATATATATATATATATATATATCGAACAAAATGTGAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATGGATATATATATATATATATATATCGAACAAAATGTGAGGA  542

seq1  TATGGTTTTAATATTTATAAAATTTTCAAGAACTAAGCTATTATAAAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTTAATATTTATAAAATTTTCAAGAACTAAGCTATTATAAAAAT  592

seq1  GCATGGAAAACTGCCTTTTGCTCAGAGATTTCCCCAAAGGTTTCTATATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAAAACTGCCTTTTGCTCAGAGATTTCCCCAAAGGTTTCTATATT  642

seq1  GGAAAGTCACGTTATCCACGTCTACAGTGCTTTTAATAGTATCTCATATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCACGTTATCCACGTCTACAGTGCTTTTAATAGTATCTCATATA  692

seq1  ATGAGTTTACATGTACACGCAAGTACATGTGACTACTTGGAGACACTAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTACATGTACACGCAAGTACATGTGACTACTTGGAGACACTAGC  742

seq1  CTCCAGGTGTGTTCATGCTTTCTTATTTGCATATCTAAATCTATATGATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTGTGTTCATGCTTTCTTATTTGCATATCTAAATCTATATGATT  792

seq1  GCATCATAAATTATTCTCCATTCATCTCTGATTTTTAATATACACAGACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATAAATTATTCTCCATTCATCTCTGATTTTTAATATACACAGACT  842

seq1  GCTGAGAGTGTTATAAAAGTACAGGGTTGTCAGTAATATATATGAATTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGTGTTATAAAAGTACAGGGTTGTCAGTAATATATATGAATTTT  892

seq1  GACAGTAGAATAATAAAAGAACATTAGAATAGCTGTTGGATCTAATAAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGAATAATAAAAGAACATTAGAATAGCTGTTGGATCTAATAAGG  942

seq1  TTAGATACAATAGCCTTAGGTCATATGGAATGATACTTAAAAGCATGGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATACAATAGCCTTAGGTCATATGGAATGATACTTAAAAGCATGGTG  992

seq1  TTAAGGGATACATAGGTTTGAACTCAAGGTGAGTTCTAAAATATGATTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGATACATAGGTTTGAACTCAAGGTGAGTTCTAAAATATGATTTT  1042

seq1  GGCAAAATATTAGCATCTGTAAACTTCACTTTTCTCATGCTACATGGTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATATTAGCATCTGTAAACTTCACTTTTCTCATGCTACATGGTAG  1092

seq1  CATGTCCTACATGAATTC  1116
      ||||||||||||||||||
seq2  CATGTCCTACATGAATTC  1110

seq1: chr13_96843332_96844482
seq2: B6Ng01-112L01.g_68_1199

seq1  GAATTCATCACAAGAAGGGAGCCCAGAAGATAAAAGAACAGCTATAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACAAGAAGGGAGCCCAGAAGATAAAAGAACAGCTATAGATG  50

seq1  GGGACCATGTCCCAGTGAGTAAAGAAGCTAAAACGTTGAAGCCTTCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCATGTCCCAGTGAGTAAAGAAGCTAAAACGTTGAAGCCTTCAATC  100

seq1  TATGGTGTATCAATTCCAAACTCTTAAATCGTTTTTTTTTTTTCTGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGTATCAATTCCAAACTCTTAAATCGTTTTTTTTTTTTCTGACCA  150

seq1  TAGGAAAAAAATTAAGCTGCTGATGTAAGGCTTTTAACTGAGGCACGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAAAAATTAAGCTGCTGATGTAAGGCTTTTAACTGAGGCACGGTC  200

seq1  ATTAGTCTTGTTTGAGTCTAGAGAAACAGAATTACAGTAATGGACCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTTGTTTGAGTCTAGAGAAACAGAATTACAGTAATGGACCAAAA  250

seq1  GGTCAAATCGCCAGCATCCTTAGCCCACTTGGCTACGCGCCTGGCATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAATCGCCAGCATCCTTAGCCCACTTGGCTACGCGCCTGGCATTGA  300

seq1  TCTTCATGTCTTGGATGTGTGCCATGGGGTCCTGGCTGGAGAGTTAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTCTTGGATGTGTGCCATGGGGTCCTGGCTGGAGAGTTAAGCT  350

seq1  CATACGCACTTTGCTGTTTATCAACAGATCTAATTATTCAGCTTCTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGCACTTTGCTGTTTATCAACAGATCTAATTATTCAGCTTCTTACA  400

seq1  CCACAGCACAGAGCATCAAAGGATGAATCAGGCACAGTTCAGATGGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCACAGAGCATCAAAGGATGAATCAGGCACAGTTCAGATGGCAGC  450

seq1  ACGGACAGGAGAGAAAGGGCACGGAGGGAAAGGATAGCACTGAGGCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACAGGAGAGAAAGGGCACGGAGGGAAAGGATAGCACTGAGGCTGTG  500

seq1  CTGAGCCATCAGGGCGTGGTCTTAGTTGTGTGTCTGTTTTATAGTGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCATCAGGGCGTGGTCTTAGTTGTGTGTCTGTTTTATAGTGTGTT  550

seq1  AACATTTCAGGAAACAAAAGCTCACCATGTTAGTTACCACCGTTGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCAGGAAACAAAAGCTCACCATGTTAGTTACCACCGTTGGGAGG  600

seq1  CAATTCCCATCTCTCCCACTAAGCTACACCCCACCCTAAGAGGTTTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCATCTCTCCCACTAAGCTACACCCCACCCTAAGAGGTTTGTAA  650

seq1  TTTGTTTATGGTTTTCTTCATTTGTTTTTGCTTTTGCTTTTTTGAGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATGGTTTTCTTCATTTGTTTTTGCTTTTGCTTTTTTGAGACAT  700

seq1  TTAG-AAAGTATGTAAATCACATTGACTTCCATAGTTCTAGCAAAAGAGC  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAGTATGTAAATCACATTGACTTCCATAGTTCTAGCAAAAGAGC  750

seq1  TTTGGCTCTAACAGCTTATTTTATCCTCACCCCCTAAAAACCTCCAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCTAACAGCTTATTTTATCCTCACCCCCTAAAAACCTCCAAAAA  800

seq1  GTTCTCATTTAGCAAAAAATTCTACCAGCAAGTGACA-TTTTATGATTAT  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTCTCATTTAGCAAAAAATTCTACCAGCAAGTGACATTTTTATGATTAT  850

seq1  CTGATTCCACATAAATTAATAATTAACTGCTGAATATTTGAGGTCTTATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCACATAAATTAATAATTAACTGCTGAATATTTGAGGTCTTATG  900

seq1  TTAGCCCCCTCTGGCTTTTAAGAAACATATTTCATTGAAACCAAATCCTT  948
      ||||||||||||||||||| |||||||||||||||||||  | |||||||
seq2  TTAGCCCCCTCTGGCTTTT-AGAAACATATTTCATTGAA--CCAATCCTT  947

seq1  CCTTCAAATGCTGCCCAGGGAAAGAAACCAAAGTCACCAATCTGGCATAT  998
      ||||| ||||||||||||||||||||||| |||||||| |||||||||||
seq2  CCTTC-AATGCTGCCCAGGGAAAGAAACC-AAGTCACC-ATCTGGCATAT  994

seq1  TCATGAGAGGTCAAAATAGTAAAACCAGGGCCCTGAGTTAGTCTGAAATT  1048
      |||||||| ||| |||||||  || || ||||||||| |||| || ||||
seq2  TCATGAGA-GTC-AAATAGT--AATCA-GGCCCTGAG-TAGTTTG-AATT  1037

seq1  GCTTAGGGGACGCTGCAAGAGGAGCCATGACTGACTAAGAGCAGAGCCCA  1098
      |||||  ||||||||| ||||||||||||||||||||| | |||||||||
seq2  GCTTA--GGACGCTGC-AGAGGAGCCATGACTGACTAA-ACCAGAGCCCA  1083

seq1  TCTGGACCCTGAATTCTGGGAAGCTTCTGGCAACAGGCAGAGAAAGAGAG  1148
      ||| || |||| ||||| |||||||||| |||||| ||| ||||||||||
seq2  TCT-GATCCTG-ATTCTTGGAAGCTTCTTGCAACA-GCA-AGAAAGAGAG  1129

seq1  AAA  1151
      |||
seq2  AAA  1132