BAC Information

Click to search

BAC

Clone NameB6Ng01-112L11
Chromosome13 (Build37)
Map Location 9,870,669 - 9,871,905
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11
Downstream geneChrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112L11.bB6Ng01-112L11.g
ACCDH918708DH918709
length1,1611,228
definitionDH918708|Mus musculus domesticus DNA, BAC clone: B6Ng01-112L11, 5' end.DH918709|Mus musculus domesticus DNA, BAC clone: B6Ng01-112L11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatatcgaaaggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccactcagaatggctaagatcaaaaattcaggtgacag
cagacgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaagcagtctggcagttcctc
agaaaattggacatagtactactagaggatccagcaatacctctcctggg
catatatccagaagatgttccaaccggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatttatacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcttgagtgaggtaacccaatctcaa
aggaactcacacaatatatactcactgataagtggatattagcccagaaa
cttaggatacccaagatataagatacaatttgctaaacgcatggaactca
agaagaatgaagaccaaagtatggacattttgccccttcttagaattggg
aacaaaacacccatggaaggagttacagagacaaaatgtggagctgtgat
gaaaggatggaccatctagtgattgccatacccggggatccatcccataa
acagcttccaaacgctgacaccattgcatacactagcaagattttgctga
aaggacccagatatagctgtctcttgtgagactatgccggggcctagcaa
acacagaagtggatgatcacagtcagctattggatggatcacacggcccc
aatggagaagctagagaaagtacccaggagctaaaggatctgcaacccta
tagtggacacattatgaactaccagtaccccggagctctgtttctagctg
cattgatcaaagattgctagtcgcatcactggaagagagcccatgactgc
aaacttatatgcctgacaggaatgacagggccaaattggaatggtggtta
gagagatgtgc
gaattcctcacaggactatagccaccaaaagacttatctttttaaaaatc
gagatcaccttcttctcaacctaaactgagcattttctaatacttctcct
gagagagaagtctgtatttttattcaatgcagggtgaggcagatctatct
ggtaacagttccagcttatcctaggctcaagggcaactttactgcctctc
taagaacttaagtcacacatactgttgttttcctgcctctaaatggtcag
cttctaaggactgaggactgcttgccttagtagcagtgcttgccttggaa
gagagacccagcccaaaggcaggcgtggtgtgagccgaggcagaagcatt
ctcccgggcttgctagcctcagtctcgccaatttgggggactctaagcca
atgagagacactgtctcaaacaaggtagacagacttcctgaggatgataa
gtgaggttgtactccagcctcatacatacatacacacacacacacacaca
cacacacacacacacacacacacacgtgtacatgcacctacacatacatg
cataaaaataagtagggctgtggataaataaattgctcaataggtagagt
cacatgctaccaagcctgatgacttgagttagatccccagaacctgtatg
gtggaaagagaggactgattcccattggttgccctctgatttctacacac
atgctatagcaagtgcacacacgtgcaaaccaatgtgtacccaggctgta
gtttcaccaatagcctctcctgggctcttttcctggtgcaaaacttcaac
ttttctctatgataccttctgtcctggggatcccactgctcctctgactg
cagctgcaccaatggcctctcccagtgccaagtctcagctgctctccatg
accccgtcatacctccaaaccaataccacctgagtggagagggcctgggg
accatataaacatgggctttctcactgtgcccgtggcagtcattggttca
cttaacacgtccttagatgtcattgtcttgctgggacctactgcttgaga
gtcttgttatcctttccttcagcagttagacttgttttctcttccagtcc
aaagcaccttagcctcctattgcacaatagaagcctctcctatggagagt
tacaccgttgaacttgatagaaccaggtaagcaagcctaattcttttttt
tccgtcctttctcttcctatgtgtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_9870669_9871905
seq2: B6Ng01-112L11.g_68_1295 (reverse)

seq1  --ATACACAAAGAAAGAAAGAAAGGA--AAAAAAAAAGAAATTAGGACCT  46
        | ||||| || |||  ||||||||   ||||||||| |||||||  ||
seq2  ATACACACATAGGAAG--AGAAAGGACGGAAAAAAAAG-AATTAGG--CT  45

seq1  TGCTTAAACTGTGTTCTCTACTAAGTTCCAAGCGTG-AACCCTCCATAGG  95
      ||||| | ||| ||  ||||  ||||| |||  ||| ||| |||||||||
seq2  TGCTT-ACCTG-GT--TCTATCAAGTT-CAACGGTGTAACTCTCCATAGG  90

seq1  AGGAGCCTCTA-TGTGC-ATAGGAGGCTAAAGTTGCTTTTGGACTGGAGG  143
      ||  || |||| ||||| |||||||||| ||| ||| ||||||||||| |
seq2  AGAGGCTTCTATTGTGCAATAGGAGGCT-AAGGTGC-TTTGGACTGGAAG  138

seq1  AG-AAACAGGTCTAACTGCTTGTAGGAAAGGAT-ACAAGACTCTCAAGCA  191
      || ||||| |||||||||| || |||||||||| ||||||||||||||||
seq2  AGAAAACAAGTCTAACTGC-TGAAGGAAAGGATAACAAGACTCTCAAGCA  187

seq1  GTAAGTTCCCAGCCAAGACCAATGACATCTAAGGACGTGTTAAGTGAACC  241
      || || |||||| ||||| ||||||||||||||||||||||||||||| |
seq2  GT-AGGTCCCAG-CAAGA-CAATGACATCTAAGGACGTGTTAAGTGAA-C  233

seq1  CAATGACCTGCCACGGGCACAGTGAGAAAGCCCATGTTTATATGGTCCCC  291
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGA-CTGCCACGGGCACAGTGAGAAAGCCCATGTTTATATGGTCCCC  282

seq1  AGGCCCTCTCCACTCAGGTGGTATTGGTTTGGAGGTATGACGGGGTCATG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTCTCCACTCAGGTGGTATTGGTTTGGAGGTATGACGGGGTCATG  332

seq1  GAGAGCAGCTGAGACTTGGCACTGGGAGAGGCCATTGGTGCAGCTGCAGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGCTGAGACTTGGCACTGGGAGAGGCCATTGGTGCAGCTGCAGT  382

seq1  CAGAGGAGCAGTGGGATCCCCAGGACAGAAGGTATCATAGAGAAAAGTTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGCAGTGGGATCCCCAGGACAGAAGGTATCATAGAGAAAAGTTG  432

seq1  AAGTTTTGCACCAGGAAAAGAGCCCAGGAGAGGCTATTGGTGAAACTACA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGCACCAGGAAAAGAGCCCAGGAGAGGCTATTGGTGAAACTACA  482

seq1  GCCTGGGTACACATTGGTTTGCACGTGTGTGCACTTGCTATAGCATGTGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTACACATTGGTTTGCACGTGTGTGCACTTGCTATAGCATGTGT  532

seq1  GTAGAAATCAGAGGGCAACCAATGGGAATCAGTCCTCTCTTTCCACCATA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATCAGAGGGCAACCAATGGGAATCAGTCCTCTCTTTCCACCATA  582

seq1  CAGGTTCTGGGGATCTAACTCAAGTCATCAGGCTTGGTAGCATGTGACTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCTGGGGATCTAACTCAAGTCATCAGGCTTGGTAGCATGTGACTC  632

seq1  TACCTATTGAGCAATTTATTTATCCACAGCCCTACTTATTTTTATGCATG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTGAGCAATTTATTTATCCACAGCCCTACTTATTTTTATGCATG  682

seq1  TATGTGTAGGTGCATGTACACGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTAGGTGCATGTACACGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  732

seq1  TGTGTGTGTGTGTGTATGTATGTATGAGGCTGGAGTACAACCTCACTTAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTATGTATGTATGAGGCTGGAGTACAACCTCACTTAT  782

seq1  CATCCTCAGGAAGTCTGTCTACCTTGTTTGAGACAGTGTCTCTCATTGGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAGGAAGTCTGTCTACCTTGTTTGAGACAGTGTCTCTCATTGGC  832

seq1  TTAGAGTCCCCCAAATTGGCGAGACTGAGGCTAGCAAGCCCGGGAGAATG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTCCCCCAAATTGGCGAGACTGAGGCTAGCAAGCCCGGGAGAATG  882

seq1  CTTCTGCCTCGGCTCACACCACGCCTGCCTTTGGGCTGGGTCTCTCTTCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCTCGGCTCACACCACGCCTGCCTTTGGGCTGGGTCTCTCTTCC  932

seq1  AAGGCAAGCACTGCTACTAAGGCAAGCAGTCCTCAGTCCTTAGAAGCTGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGCACTGCTACTAAGGCAAGCAGTCCTCAGTCCTTAGAAGCTGA  982

seq1  CCATTTAGAGGCAGGAAAACAACAGTATGTGTGACTTAAGTTCTTAGAGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAGAGGCAGGAAAACAACAGTATGTGTGACTTAAGTTCTTAGAGA  1032

seq1  GGCAGTAAAGTTGCCCTTGAGCCTAGGATAAGCTGGAACTGTTACCAGAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTAAAGTTGCCCTTGAGCCTAGGATAAGCTGGAACTGTTACCAGAT  1082

seq1  AGATCTGCCTCACCCTGCATTGAATAAAAATACAGACTTCTCTCTCAGGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCCTCACCCTGCATTGAATAAAAATACAGACTTCTCTCTCAGGA  1132

seq1  GAAGTATTAGAAAATGCTCAGTTTAGGTTGAGAAGAAGGTGATCTCGATT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATTAGAAAATGCTCAGTTTAGGTTGAGAAGAAGGTGATCTCGATT  1182

seq1  TTTAAAAAGATAAGTCTTTTGGTGGCTATAGTCCTGTGAGGAATTC  1237
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGATAAGTCTTTTGGTGGCTATAGTCCTGTGAGGAATTC  1228