BAC Information

Click to search

BAC

Clone NameB6Ng01-112O09
Chromosome13 (Build37)
Map Location 38,294,365 - 38,448,345
singlet/doubletdoublet
Overlap gene6530403A03Rik, Bmp6
Upstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp
Downstream geneTxndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112O09.bB6Ng01-112O09.g
ACCDH918836DH918837
length255666
definitionDH918836|Mus musculus domesticus DNA, BAC clone: B6Ng01-112O09, 5' end.DH918837|Mus musculus domesticus DNA, BAC clone: B6Ng01-112O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,448,091 - 38,448,345)(38,294,365 - 38,295,027)
sequence
ccaggtcttatccaagggctcttctaatctgtaagaacaggactctaggt
accttagcaccaccaagaaaccaacgactttaactgtaatagtccgcagt
cacttgcaaagctctatagaagtgtgtgttacctgctctattgggtcaat
ggcagatgcaccaaactatgggtggacagacatgcgttacagtgagagta
aacgcaatgaagttgctagtgctattgatggagaggaagagggggaggga
gttgg
gaattctgggaattcttgggaaggggcagggaagggacacagttagctgg
tctgtaatctaacacctaccatttggctatgaaactaagataaaagggac
agcatgagaggagtgtgactaatggctctagaactcaaccctggctgtct
tttgactgctgccatgttttcttcataatagtcatttcttatcggttagt
gactaaagttactatttcttcttcttcttcttcttcttcttcttcttctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcctttaaa
ttaaaaggtgggaactatgccattggaaatgattggcagccaaaatttcc
ctttctatttcttccactggtggtaaacgatgtggggagagaagcaaaga
tctgatatggaggcaaatgtgattcagttctagggatcaaaacaatacag
gaagattaaatgtggagtcgtacaagggaagagatacacttgtgtataaa
gcaaagtgcatgacactataataaaagagctgtgtcaaagacatggggga
tggaagaagatgacttccactggccaaattcagacaaatttggatagtaa
caggaactattatgataatgaaataataatgctcaattttaaaacttaat
tcatttcccctccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38448091_38448345
seq2: B6Ng01-112O09.b_59_313 (reverse)

seq1  CCAACTCCCTCCCCCTCTTCCTCTCCATCAATAGCACTAGCAACTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCCTCCCCCTCTTCCTCTCCATCAATAGCACTAGCAACTTCATT  50

seq1  GCGTTTACTCTCACTGTAACGCATGTCTGTCCACCCATAGTTTGGTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTACTCTCACTGTAACGCATGTCTGTCCACCCATAGTTTGGTGCAT  100

seq1  CTGCCATTGACCCAATAGAGCAGGTAACACACACTTCTATAGAGCTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTGACCCAATAGAGCAGGTAACACACACTTCTATAGAGCTTTGC  150

seq1  AAGTGACTGCGGACTATTACAGTTAAAGTCGTTGGTTTCTTGGTGGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTGCGGACTATTACAGTTAAAGTCGTTGGTTTCTTGGTGGTGCT  200

seq1  AAGGTACCTAGAGTCCTGTTCTTACAGATTAGAAGAGCCCTTGGATAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACCTAGAGTCCTGTTCTTACAGATTAGAAGAGCCCTTGGATAAGA  250

seq1  CCTGG  255
      |||||
seq2  CCTGG  255

seq1: chr13_38294365_38295027
seq2: B6Ng01-112O09.g_71_736

seq1  GAATTCTGGGAATTCTTGGGAAGGGGCAGGGAAGGGACACAGTTAGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAATTCTTGGGAAGGGGCAGGGAAGGGACACAGTTAGCTGG  50

seq1  TCTGTAATCTAACACCTACCATTTGGCTATGAAACTAAGATAAAAGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATCTAACACCTACCATTTGGCTATGAAACTAAGATAAAAGGGAC  100

seq1  AGCATGAGAGGAGTGTGACTAATGGCTCTAGAACTCAACCCTGGCTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAGAGGAGTGTGACTAATGGCTCTAGAACTCAACCCTGGCTGTCT  150

seq1  TTTGACTGCTGCCATGTTTTCTTCATAATAGTCATTTCTTATCGGTTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGCTGCCATGTTTTCTTCATAATAGTCATTTCTTATCGGTTAGT  200

seq1  GACTAAAGTTACTAT---TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  247
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  GACTAAAGTTACTATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  250

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTAAA  300

seq1  TTAAAAGGTGGGAACTATGCCATTGGAAATGATTGGCAGCCAAAATTTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGTGGGAACTATGCCATTGGAAATGATTGGCAGCCAAAATTTCC  350

seq1  CTTTCTATTTCTTCCACTGGTGGTAAACGATGTGGGGAGAGAAGCAAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATTTCTTCCACTGGTGGTAAACGATGTGGGGAGAGAAGCAAAGA  400

seq1  TCTGATATGGAGGCAAATGTGATTCAGTTCTAGGGATCAAAACAATACAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATATGGAGGCAAATGTGATTCAGTTCTAGGGATCAAAACAATACAG  450

seq1  GAAGATTAAATGTGGAGTCGTACAAGGGAAGAGATACACTTGTGTATAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTAAATGTGGAGTCGTACAAGGGAAGAGATACACTTGTGTATAAA  500

seq1  GCAAAGTGCATGACACTATAATAAAAGAGCTGTGTCAAAGACATGGGGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGCATGACACTATAATAAAAGAGCTGTGTCAAAGACATGGGGGA  550

seq1  TGGAAGAAGATGACTTCCACTGGCCAAATTCAGACAAATTTGGATAGTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAGATGACTTCCACTGGCCAAATTCAGACAAATTTGGATAGTAA  600

seq1  CAGGAACTATTATGATAATGAAATAATAATGCTCAATTTTAAAACTTAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTATTATGATAATGAAATAATAATGCTCAATTTTAAAACTTAAT  650

seq1  TCATTTCCCCTCCCCC  663
      ||||||||||||||||
seq2  TCATTTCCCCTCCCCC  666