BAC Information

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BAC

Clone NameB6Ng01-113G22
Chromosome13 (Build37)
Map Location 96,367,388 - 96,500,752
singlet/doubletdoublet
Overlap geneF2r, Iqgap2, F2rl2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1
Downstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113G22.bB6Ng01-113G22.g
ACCDH919230DH919231
length5841,115
definitionDH919230|Mus musculus domesticus DNA, BAC clone: B6Ng01-113G22, 5' end.DH919231|Mus musculus domesticus DNA, BAC clone: B6Ng01-113G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,367,388 - 96,367,977)(96,499,645 - 96,500,752)
sequence
catacagtagacaactggccctccaaacaagccaactttgcaaaggctgc
ctctcttttttttttttttttctcgagacagggtttctctgtgtagccct
ggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaa
tctgcctgcctctgcttcccgagtgctggggttaaaggcgtgcaccacca
cgcccggcaaaggctggctcttaaggtcttgctacacagtgcatggtcca
aagggctgcaactttaacatttcttggaatgcagtgagacttgtacctca
gacccagccccaggcctacagcttggcgcctgcagcttcaaaagatttcc
agatggcaaagcggggtccaaactttcttgacctttttgtagtgctggga
agtgaggccatcacacactaggcgaatgaatcctctgccagctcctgaac
attttgtttaaaatgtctctatcaactctggcttacccattagactccta
ggagaccgcgacagttctgactggtgctccggcccagttctcagaggttc
cgactctcggtgtttgggtgaggggtgggtgggg
gaattctcacattggtttttttctgttcttcctccattaagccatacact
tgctgaaggaatgagctcatagctctaagtgagcccctcccatgtcatcc
tgtccaccccccgctgagtttgaactctgcatccctgccttataccaacc
acagcggaagaatcattgtttccacttgcccaccccgcactgttctgtgc
tttggctcctggtttgaagggagtgccaccttgtctagattgccccctct
ctcctgctctgagctggattctgcggccttttcttaccaacttgaatcca
ttgcttctcagtctcacaggctggcctccaagatctccacaggactccag
gagccccgcttccacctgggtctctctggtttcctgtcatcctccaacct
aacccctctccgaagataaggtgaaagaattcgtgtttaattcagaacca
acatcacctcactaaaaacctgtcctgattgtcactttcctacttaagga
cagggccgggtatgatggtgcacaccttgaattccagaacttagaagaga
aagacaggctgatctctatgaaatcaaaactagcctggtctacagattga
gttccctgtctcaaaatgaaacaaagtacaagaaaacaaaacaaacaaac
aaactaaagtctgagtgtttagcctggcctttggttggtgttctctacaa
tgcacagaccatcttctgtctaataaaaacatgcggactaagcttggtga
ctttattttcttttaaccaaacccacctgccgtcagcccattgctttatc
tctcctctgcatcttctccaggtttgcctcagttgttaccacggtttaaa
tgtttctttccaaatgagtttgactgtattcctctaactagactgtaatc
tcttcgatgcacatttgttatctctgatttttaatgttattagacagact
caaatgaaatttttagtatttccccattttgtctctataaacatggccat
attggactgatcccttcccaatggtccctgctaaaacctttacccttgtc
cacagattcatccagccatgctggttgggtcttggtacttccggttgctc
cttgcataagccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96367388_96367977
seq2: B6Ng01-113G22.b_49_638

seq1  GAATTCCATACAGTAGACAACTGGCCCTCCAAACAAGCCAACTTTGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACAGTAGACAACTGGCCCTCCAAACAAGCCAACTTTGCAAA  50

seq1  GGCTGCCTCTCTTTTTTTTTTTTTTTTCTCGAGACAGGGTTTCTCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTCTCTTTTTTTTTTTTTTTTCTCGAGACAGGGTTTCTCTGTGT  100

seq1  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  150

seq1  CAGAAATCTGCCTGCCTCTGCTTCCCGAGTGCTGGGGTTAAAGGCGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCTGCCTGCCTCTGCTTCCCGAGTGCTGGGGTTAAAGGCGTGCA  200

seq1  CCACCACGCCCGGCAAAGGCTGGCTCTTAAGGTCTTGCTACACAGTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACGCCCGGCAAAGGCTGGCTCTTAAGGTCTTGCTACACAGTGCAT  250

seq1  GGTCCAAAGGGCTGCAACTTTAACATTTCTTGGAATGCAGTGAGACTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAAGGGCTGCAACTTTAACATTTCTTGGAATGCAGTGAGACTTGT  300

seq1  ACCTCAGACCCAGCCCCAGGCCTACAGCTTGGCGCCTGCAGCTTCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGACCCAGCCCCAGGCCTACAGCTTGGCGCCTGCAGCTTCAAAAG  350

seq1  ATTTCCAGATGGCAAAGCGGGGTCCAAACTTTCTTGACCTTTTTGTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGATGGCAAAGCGGGGTCCAAACTTTCTTGACCTTTTTGTAGTG  400

seq1  CTGGGAAGTGAGGCCATCACACACTAGGCGAATGAATCCTCTGCCAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGTGAGGCCATCACACACTAGGCGAATGAATCCTCTGCCAGCTC  450

seq1  CTGAACATTTTGTTTAAAATGTCTCTATCAACTCTGGCTTACCCATTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATTTTGTTTAAAATGTCTCTATCAACTCTGGCTTACCCATTAGA  500

seq1  CTCCTAGGAGACCGCGACAGTTCTGACTGGTGCTCCGGCCCAGTTCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGGAGACCGCGACAGTTCTGACTGGTGCTCCGGCCCAGTTCTCAG  550

seq1  AGGTTCCGACTCTCGGTGTTTGGGTGAGGGGTGGGTGGGG  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCGACTCTCGGTGTTTGGGTGAGGGGTGGGTGGGG  590

seq1: chr13_96499645_96500752
seq2: B6Ng01-113G22.g_68_1182 (reverse)

seq1  CAGGGC-TCTGCAGGGAGCAACAGGAAGTACAAAGACC--AACAGCATGG  47
      |||||| | |||| |||||||| |||||||| ||||||  | ||||||||
seq2  CAGGGCTTATGCAAGGAGCAACCGGAAGTACCAAGACCCAACCAGCATGG  50

seq1  CTGGCTG-ATCTGTGGACAAGGCT-AAGGGTCTAGCAGGGAACAATTGGA  95
      |||| || |||||||||||||| | |||| | ||||||||| || | |||
seq2  CTGGATGAATCTGTGGACAAGGGTAAAGGTTTTAGCAGGGACCATTGGGA  100

seq1  AGGGATCAGT-CAATATGGCCATGTTTATAGAGACAAAATGGGGAAATAC  144
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCAGTCCAATATGGCCATGTTTATAGAGACAAAATGGGGAAATAC  150

seq1  TAAAAATTTCATTTGAGTCTGTCTAATAACATTAAAAATCAGAGATAACA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTCATTTGAGTCTGTCTAATAACATTAAAAATCAGAGATAACA  200

seq1  AATGTGCATCGAAGAGATTACAGTCTAGTTAGAGGAATACAGTCAAACTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCATCGAAGAGATTACAGTCTAGTTAGAGGAATACAGTCAAACTC  250

seq1  ATTTGGAAAGAAACATTTAAACCGTGGTAACAACTGAGGCAAACCTGGAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAAGAAACATTTAAACCGTGGTAACAACTGAGGCAAACCTGGAG  300

seq1  AAGATGCAGAGGAGAGAT-AAGCAATGGGCTGACGGCAGGTGGGTTTGGT  343
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGATGCAGAGGAGAGATAAAGCAATGGGCTGACGGCAGGTGGGTTTGGT  350

seq1  TAAAAGAAAATAAAGTCACCAAGCTTAGTCCGCATGTTTTTATTAGACAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAATAAAGTCACCAAGCTTAGTCCGCATGTTTTTATTAGACAG  400

seq1  AAGATGGTCTGTGCATTGTAGAGAACACCAACCAAAGGCCAGGCTAAACA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGTCTGTGCATTGTAGAGAACACCAACCAAAGGCCAGGCTAAACA  450

seq1  CTCAGACTTTAGTTTGTTTGTTTGTTTTGTTTTCTTGTACTTTGTTTCAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTTTAGTTTGTTTGTTTGTTTTGTTTTCTTGTACTTTGTTTCAT  500

seq1  TTTGAGACAGGGAACTCAATCTGTAGACCAGGCTAGTTTTGATTTCATAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGGGAACTCAATCTGTAGACCAGGCTAGTTTTGATTTCATAG  550

seq1  AGATCAGCCTGTCTTTCTCTTCTAAGTTCTGGAATTCAAGGTGTGCACCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGCCTGTCTTTCTCTTCTAAGTTCTGGAATTCAAGGTGTGCACCA  600

seq1  TCATACCCGGCCCTGTCCTTAAGTAGGAAAGTGACAATCAGGACAGGTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCCGGCCCTGTCCTTAAGTAGGAAAGTGACAATCAGGACAGGTTT  650

seq1  TTAGTGAGGTGATGTTGGTTCTGAATTAAACACGAATTCTTTCACCTTAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAGGTGATGTTGGTTCTGAATTAAACACGAATTCTTTCACCTTAT  700

seq1  CTTCGGAGAGGGGTTAGGTTGGAGGATGACAGGAAACCAGAGAGACCCAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGAGAGGGGTTAGGTTGGAGGATGACAGGAAACCAGAGAGACCCAG  750

seq1  GTGGAAGCGGGGCTCCTGGAGTCCTGTGGAGATCTTGGAGGCCAGCCTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGCGGGGCTCCTGGAGTCCTGTGGAGATCTTGGAGGCCAGCCTGT  800

seq1  GAGACTGAGAAGCAATGGATTCAAGTTGGTAAGAAAAGGCCGCAGAATCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAGAAGCAATGGATTCAAGTTGGTAAGAAAAGGCCGCAGAATCC  850

seq1  AGCTCAGAGCAGGAGAGAGGGGGCAATCTAGACAAGGTGGCACTCCCTTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGAGCAGGAGAGAGGGGGCAATCTAGACAAGGTGGCACTCCCTTC  900

seq1  AAACCAGGAGCCAAAGCACAGAACAGTGCGGGGTGGGCAAGTGGAAACAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGAGCCAAAGCACAGAACAGTGCGGGGTGGGCAAGTGGAAACAA  950

seq1  TGATTCTTCCGCTGTGGTTGGTATAAGGCAGGGATGCAGAGTTCAAACTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTCCGCTGTGGTTGGTATAAGGCAGGGATGCAGAGTTCAAACTC  1000

seq1  AGCGGGGGGTGGACAGGATGACATGGGAGGGGCTCACTTAGAGCTATGAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGGGGTGGACAGGATGACATGGGAGGGGCTCACTTAGAGCTATGAG  1050

seq1  CTCATTCCTTCAGCAAGTGTATGGCTTAATGGAGGAAGAACAGAAAAAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCTTCAGCAAGTGTATGGCTTAATGGAGGAAGAACAGAAAAAAA  1100

seq1  CCAATGTGAGAATTC  1108
      |||||||||||||||
seq2  CCAATGTGAGAATTC  1115