BAC Information

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BAC

Clone NameB6Ng01-113I19
Chromosome13 (Build37)
Map Location 64,653,007 - 64,787,182
singlet/doubletdoublet
Overlap genePpia-ps13_866.1, LOC238678
Upstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298
Downstream geneLOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113I19.bB6Ng01-113I19.g
ACCDH919316DH919317
length9991,091
definitionDH919316|Mus musculus domesticus DNA, BAC clone: B6Ng01-113I19, 5' end.DH919317|Mus musculus domesticus DNA, BAC clone: B6Ng01-113I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,786,172 - 64,787,182)(64,653,007 - 64,654,090)
sequence
gaattctaattcctagaagtgcattgcctaacagcctggtagctggatgg
gggaagcacaaatgtctccttagaatatcttcattcctgccagatagtac
atcaagaacacagttccctgaattatggcaccagaaatttaggaacagag
agtatgccagggattccgctttcatgagtcatcaccatgctggggtaggc
ttttcagtggtacatccacctttgcgtcatccacactcctgtcagtaacc
ccaataaagtcactggcttaccaaagtagaattgggtgtgattgtttctt
tgatctgtaccaatactagaatggacagatgtttattcatctgtcccaag
aaaagtcagaagagactcaccaatcccataggctgtctagctaagctttg
ctgcagacaatcatgagacatgagtcagatggtaactgtggtggttaatc
ttgaatggttggaaacatctcaatacaaataaagcacacctctgggtatg
tctctggtggcacttaagagacatatcaacatgatgctgactaattcact
gtcttattcaccagcagtatcaaatttcaaggagactactgtgatgtggt
agaactctggaattgaggcctatgtggtgggaatggatcacatggggtat
gtgccttaagaagtacatcttgcccttttcttcttcctgatttattcctg
tttcctggcttccagaggtaagaaattttctgccaccatgtccttccacc
aagatgtgcctaccttactatagttgtaaaagtaacagaaatagctgatc
ataaaccaaaatctctgaagctgtgagccaaatgaggttttctttctaga
catttctctcaggtatcattatagtaatggagcctctggctaatacaaat
aacaaagggtgagtggttgtctggacatgaaagtgtgtcaaacagttgaa
tcctttgatgataacccagtcccctcatgacaaccacagtgttgaacct
gaattctctaaacacgacttcattcttttcttctccaaaattccggtaac
ctctgagaatgaagaacacgagatgcaactttatctatttccccctctca
tttcacagcccattagttcaggctaggatcctctcctgaaggagcatgtg
tgtaatttgacagcctctaaataaaagaggaaaaaaaccaatcttctcag
atacagaggtcatctgccagcaaagcaaggatggtagacacggaggggcc
gaaggcatttcagctatttttgtttgtctcagaggtaaattttcatacat
cagttcaggttgtatttttcttcaactttgccatacagctatgaattgtc
catgggtatgacaagtagaatagaagtatgtaactggggactgtaaaagg
tgacacatagcattctcccttgctgagaggaaatatccataggatacgct
atggaacaatgtattgttttaatgcactggttagtttactgttaatatac
tgttgagtttttttaaaagcataaatacttaatcagttatcttttctgca
gtttttatatagtatttttgtctcaatttcatataaggtaatttgggtgc
tatgtgaatttttctggggaggtatgagcaaacatctattcatctttaga
gcaggcaccaatagcaaacccaagaaataattcccctaaagtctggattg
gtaaaccaatgagtttactggggttacatgtgaaacaggggtagatgcat
cacagaaaggctcatgaaaactcaagcaggcagcttggtcactttataca
accttggggaggttcccaagatcagaatttcagttcttagtccctacaat
gggcagtgcacaactgtctataactccagttttaggcaatccaatatctt
ctagtttccatggatactttgcattcttgctgtgcacataaaatgaaaca
agaaatactccagatgtagggcagtgtcagtgaaaacctaaatgtctgtg
aagtaatgttgaccaactgctttgtgctaccctggctagaaatatgtcca
agatgggtcaaataaaccctgtccttcttggggtaacttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64786172_64787182
seq2: B6Ng01-113I19.b_48_1046 (reverse)

seq1  AGGTTCACAGCTGTGGTTTGTCATGAGGGGGACTTGGCTTTTGCATCAAA  50
      |||||||   |||||| ||||||||| ||||||| ||  ||  |||||||
seq2  AGGTTCAACACTGTGG-TTGTCATGA-GGGGACTGGG--TTATCATCAAA  46

seq1  TGGTTTCAACTGGTTTGACACACTTTCATGTTCCAGACAACACCTCACCC  100
       || ||||||| |||||||||||||||||| ||||||||||  |||||||
seq2  -GGATTCAACT-GTTTGACACACTTTCATG-TCCAGACAACCACTCACCC  93

seq1  TTTGTTATTTTGTTATTAGCCAGAGGCTCCATTACTATAATGAATACCTG  150
      ||||||||||   ||||||||||||||||||||||||||||| |||||||
seq2  TTTGTTATTT--GTATTAGCCAGAGGCTCCATTACTATAATG-ATACCTG  140

seq1  AGAGAAATTGTCTAGAAAGAAAACCTCATTTTGGCTCACAGCTTCAGAGA  200
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  AGAGAAA-TGTCTAGAAAGAAAACCTCA-TTTGGCTCACAGCTTCAGAGA  188

seq1  TTTTGGTTTATGATCAGCTATTTCTGTTACTTTTACAACTATAGTAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTATGATCAGCTATTTCTGTTACTTTTACAACTATAGTAAGGT  238

seq1  AGGCACATCTTGGTGGAAGGACATGGTGGCAGAAAATTTCTTACCTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATCTTGGTGGAAGGACATGGTGGCAGAAAATTTCTTACCTCTGG  288

seq1  AAGCCAGGAAACAGGAATAAATCAGGAAGAAGAAAAGGGCAAGATGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGAAACAGGAATAAATCAGGAAGAAGAAAAGGGCAAGATGTACT  338

seq1  TCTTAAGGCACATACCCCATGTGATCCATTCCCACCACATAGGCCTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGCACATACCCCATGTGATCCATTCCCACCACATAGGCCTCAAT  388

seq1  TCCAGAGTTCTACCACATCACAGTAGTCTCCTTGAAATTTGATACTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTTCTACCACATCACAGTAGTCTCCTTGAAATTTGATACTGCTG  438

seq1  GTGAATAAGACAGTGAATTAGTCAGCATCATGTTGATATGTCTCTTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAAGACAGTGAATTAGTCAGCATCATGTTGATATGTCTCTTAAGT  488

seq1  GCCACCAGAGACATACCCAGAGGTGTGCTTTATTTGTATTGAGATGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGAGACATACCCAGAGGTGTGCTTTATTTGTATTGAGATGTTTC  538

seq1  CAACCATTCAAGATTAACCACCACAGTTACCATCTGACTCATGTCTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTCAAGATTAACCACCACAGTTACCATCTGACTCATGTCTCATG  588

seq1  ATTGTCTGCAGCAAAGCTTAGCTAGACAGCCTATGGGATTGGTGAGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTGCAGCAAAGCTTAGCTAGACAGCCTATGGGATTGGTGAGTCTC  638

seq1  TTCTGACTTTTCTTGGGACAGATGAATAAACATCTGTCCATTCTAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTTTCTTGGGACAGATGAATAAACATCTGTCCATTCTAGTATT  688

seq1  GGTACAGATCAAAGAAACAATCACACCCAATTCTACTTTGGTAAGCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGATCAAAGAAACAATCACACCCAATTCTACTTTGGTAAGCCAGT  738

seq1  GACTTTATTGGGGTTACTGACAGGAGTGTGGATGACGCAAAGGTGGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATTGGGGTTACTGACAGGAGTGTGGATGACGCAAAGGTGGATGT  788

seq1  ACCACTGAAAAGCCTACCCCAGCATGGTGATGACTCATGAAAGCGGAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAAAAGCCTACCCCAGCATGGTGATGACTCATGAAAGCGGAATC  838

seq1  CCTGGCATACTCTCTGTTCCTAAATTTCTGGTGCCATAATTCAGGGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATACTCTCTGTTCCTAAATTTCTGGTGCCATAATTCAGGGAACT  888

seq1  GTGTTCTTGATGTACTATCTGGCAGGAATGAAGATATTCTAAGGAGACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTGATGTACTATCTGGCAGGAATGAAGATATTCTAAGGAGACAT  938

seq1  TTGTGCTTCCCCCATCCAGCTACCAGGCTGTTAGGCAATGCACTTCTAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTCCCCCATCCAGCTACCAGGCTGTTAGGCAATGCACTTCTAGG  988

seq1  AATTAGAATTC  1011
      |||||||||||
seq2  AATTAGAATTC  999

seq1: chr13_64653007_64654090
seq2: B6Ng01-113I19.g_71_1161

seq1  GAATTCTCTAAACACGACTTCATTCTTTTCTTCTCCAAAATTCCGGTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAACACGACTTCATTCTTTTCTTCTCCAAAATTCCGGTAAC  50

seq1  CTCTGAGAATGAAGAACACGAGATGCAACTTTATCTATTTCCCCCTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAATGAAGAACACGAGATGCAACTTTATCTATTTCCCCCTCTCA  100

seq1  TTTCACAGCCCATTAGTTCAGGCTAGGATCCTCTCCTGAAGGAGCATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGCCCATTAGTTCAGGCTAGGATCCTCTCCTGAAGGAGCATGTG  150

seq1  TGTAATTTGACAGCCTCTAAATAAAAGAGGAAAAAAACCAATCTTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTGACAGCCTCTAAATAAAAGAGGAAAAAAACCAATCTTCTCAG  200

seq1  ATACAGAGGTCATCTGCCAGCAAAGCAAGGATGGTAGACACGGAGGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGGTCATCTGCCAGCAAAGCAAGGATGGTAGACACGGAGGGGCC  250

seq1  GAAGGCATTTCAGCTATTTTTGTTTGTCTCAGAGGTAAATTTTCATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATTTCAGCTATTTTTGTTTGTCTCAGAGGTAAATTTTCATACAT  300

seq1  CAGTTCAGGTTGTATTTTTCTTCAACTTTGCCATACAGCTATGAATTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGGTTGTATTTTTCTTCAACTTTGCCATACAGCTATGAATTGTC  350

seq1  CATGGGTATGACAAGTAGAATAGAAGTATGTAACTGGGGACTGTAAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTATGACAAGTAGAATAGAAGTATGTAACTGGGGACTGTAAAAGG  400

seq1  TGACACATAGCATTCTCCCTTGCTGAGAGGAAATATCCATAGGATACGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATAGCATTCTCCCTTGCTGAGAGGAAATATCCATAGGATACGCT  450

seq1  ATGGAACAATGTATTGTTTTAATGCACTGGTTAGTTTACTGTTAATATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACAATGTATTGTTTTAATGCACTGGTTAGTTTACTGTTAATATAC  500

seq1  TGTTGAGTTTTTTTAAAAGCATAAATACTTAATCAGTTATCTTTTCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTTTTTTTAAAAGCATAAATACTTAATCAGTTATCTTTTCTGCA  550

seq1  GTTTTTATATAGTATTTTTGTCTCAATTTCATATAAGGTAATTTGGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATATAGTATTTTTGTCTCAATTTCATATAAGGTAATTTGGGTGC  600

seq1  TATGTGAATTTTTCTGGGGAGGTATGAGCAAACATCTATTCATC-TTAGA  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATGTGAATTTTTCTGGGGAGGTATGAGCAAACATCTATTCATCTTTAGA  650

seq1  GCAGGCACCAATAGCAAACCCAAGAAATAATTCCCCTAAAGTCTGGATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACCAATAGCAAACCCAAGAAATAATTCCCCTAAAGTCTGGATTG  700

seq1  GTAAACCAATGAGTTTACTGGGGTTACATGTGAAACAGGGGTAGATGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCAATGAGTTTACTGGGGTTACATGTGAAACAGGGGTAGATGCAT  750

seq1  CACAGAAAGGCTCATGAAAACTCAAGCAGGCAGCTTGGTCAC-TTATACA  798
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACAGAAAGGCTCATGAAAACTCAAGCAGGCAGCTTGGTCACTTTATACA  800

seq1  ACCTTGGGGAGGTTCCCAAAGATCAGAATTTCAGTTCTTAGTCCCTACAA  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACCTTGGGGAGGTTCCC-AAGATCAGAATTTCAGTTCTTAGTCCCTACAA  849

seq1  TGGGCAGTGCACAACTGTCTATAACTCCAGTTTTAGGCAATCCAATATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTGCACAACTGTCTATAACTCCAGTTTTAGGCAATCCAATATCT  899

seq1  TCTAGTTTCCATGGATAC-TTGCATTCTTGCTGTGCACATAAAAATGAAA  947
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  TCTAGTTTCCATGGATACTTTGCATTCTTGCTGTGCACAT-AAAATGAAA  948

seq1  CAAGAAATACTCCAGATGTAAGGGCAGTGTCAGTGAAAA-CTTAATGTCT  996
      ||||||||||||||||||| ||||||||||||||||||| || |||||||
seq2  CAAGAAATACTCCAGATGT-AGGGCAGTGTCAGTGAAAACCTAAATGTCT  997

seq1  GTGAAGT-ATGTTGACCAACTTGCTTGTAGCTACCTTGCCT-GACAT-TG  1043
      ||||||| |||||||||||| |||||   |||||| || || || || ||
seq2  GTGAAGTAATGTTGACCAAC-TGCTTTGTGCTACCCTGGCTAGAAATATG  1046

seq1  TCC-AGATGGGTCAA--TAGTCCTG-CCTTCTGGGGGTAACTTCA  1084
      ||| |||||||||||   |  |||| |||||| ||||||||||||
seq2  TCCAAGATGGGTCAAATAAACCCTGTCCTTCTTGGGGTAACTTCA  1091