BAC Information

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BAC

Clone NameB6Ng01-113P11
Chromosome13 (Build37)13 (Build37)
Map Location 49,218,020 - 49,218,28549,033,021 - 49,033,660
singlet/doubletsingletsinglet
Overlap geneWnk2
Upstream geneId4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik
Downstream geneNinj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113P11.bB6Ng01-113P11.g
ACCDH919612DH919613
length585646
definitionDH919612|Mus musculus domesticus DNA, BAC clone: B6Ng01-113P11, 5' end.DH919613|Mus musculus domesticus DNA, BAC clone: B6Ng01-113P11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,218,020 - 49,218,285)(49,033,021 - 49,033,660)
sequence
tttgttcagctctgagccccattttttaatggggttatttgattttctgg
agtccaccttcttgagttctttgtatatattggatattattgaccgagct
tcttaaatggggtagtggcctcatgtagagtcatgtgactgaatataggg
actgggagaatctggcaacaacaaaaggtttctgaacatgaagtgacaaa
aaaaaattaattcaaaatcaaacaggtaaggagtcccaggagtttctggc
agccctcacccatgtattgagtggctttgcgctgtgcatgcctcagggtg
ggagacaactgcctgaaatctcttggttcagaactgtggtcacgagcttc
agtgtttttcctgtggtactaagtcttttactctcctacggacacaatgt
gctcaggctacaggagaccctgccacatgggaaaacaaaacaagcgaaaa
acaaaacaaaacgaaacaaaaaatgctgtttgagttactgacatgagttt
tacaaaaactgttcaatgaattttagcttctaatgggatagaatttccaa
tagctttctgaaagggctttaaacacactcctgct
gaattcagcaggacactactgaaaaggtagaaagggcaagcaaagtctca
gcgtggaggaggaggaggaccacacctggaatcccaggactcaagagggt
ggaagctgcagcctagctgactctgttccaaaaatcaaaaacccaaaaca
tttgtaaatcttgtatctaacagaagaatgcatctgaaatacattaaaat
ctgttttagtttaatgaagaattcaatctaaaaataggcaaaggatccaa
gtagactttcacccaaaggtggcagggaaatggccaacaggcataggaaa
agatgcacaatatcattagtcattacagaaatgcaacttgaatgcaaaac
ccggagctcatagaccatgagagtgagcgagtacaagagcagacagtaaa
aagtgctgtctgggacatccagaaatccaaccctctacatgctgccaagg
gaataaaacagtacagccactgcacagcatgaagaggtataaggagctct
caaaaaactgagcatagaagtagcacacagacgggcagtggtggcgcacg
cctttaatcccagcacttaggaggcagaggcaggcggattttctgagttc
aaggccagtctggtctatagagtgagttccaggacagccagggcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_49218020_49218285
seq2: B6Ng01-113P11.b_369_640

seq1  CTGAAATC-CTGGGTTCAGAACTGTGGTCATGAGCTGCAGTGTTTTTCCT  49
      |||||||| || |||||||||||||||||| ||||| |||||||||||||
seq2  CTGAAATCTCTTGGTTCAGAACTGTGGTCACGAGCTTCAGTGTTTTTCCT  50

seq1  GTGGTACTAAGTCTTTTACTCTCCCAGGGACAGAATGTGCTCAGGCTACA  99
      |||||||||||||||||||||||| | ||||| |||||||||||||||||
seq2  GTGGTACTAAGTCTTTTACTCTCCTACGGACACAATGTGCTCAGGCTACA  100

seq1  GGAGACCCTGCCACACGGGAAAATAAAACAA---AACAAGGAAATAAAA-  145
      ||||||||||||||| ||||||| |||||||   || ||  ||| |||| 
seq2  GGAGACCCTGCCACATGGGAAAACAAAACAAGCGAAAAACAAAACAAAAC  150

seq1  -----AAAAAATGCTGTTTGAGTTAGTTACTGACATGAGTGTCACAAAAA  190
           |||||||||||||||    |||||||||||||||| | |||||||
seq2  GAAACAAAAAATGCTGTTTG----AGTTACTGACATGAGTTTTACAAAAA  196

seq1  CTGCTCAATGAATTTTGGTTTCAGAATGGGATAGGATTTCCAATGGC-TT  239
      ||| |||||||||||| | |||  |||||||||| ||||||||| || ||
seq2  CTGTTCAATGAATTTTAGCTTC-TAATGGGATAGAATTTCCAATAGCTTT  245

seq1  CTGAAAGGGCTTTAAACACACTCCTGC  266
      |||||||||||||||||||||||||||
seq2  CTGAAAGGGCTTTAAACACACTCCTGC  272

seq1: chr13_49033021_49033660
seq2: B6Ng01-113P11.g_71_711

seq1  GAATTCAGCAGGACACTACTGAAAAGGTAGAAAGGGCAAGCAAAGTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGGACACTACTGAAAAGGTAGAAAGGGCAAGCAAAGTCTCA  50

seq1  GCGTGGAGGAGGAGGAGGACCACACCTGGAATCCCAGGACTCAAGAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGAGGAGGAGGAGGACCACACCTGGAATCCCAGGACTCAAGAGGGT  100

seq1  GGAAGCTGCAGCCTAGCTGACTCTGTTCCAAAAATCAAAAACCCAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGCAGCCTAGCTGACTCTGTTCCAAAAATCAAAAACCCAAAACA  150

seq1  TTTGTAAATCTTGTATCTAACAGAAGAATGCATCTGAAATACATTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAATCTTGTATCTAACAGAAGAATGCATCTGAAATACATTAAAAT  200

seq1  CTGTTTTAGTTTAATGAAGAATTCAATCTAAAAATAGGCAAAGGATCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAGTTTAATGAAGAATTCAATCTAAAAATAGGCAAAGGATCCAA  250

seq1  GTAGACTTTCACCCAAAGGTGGCAGGGAAATGGCCAACAGGCATAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTTTCACCCAAAGGTGGCAGGGAAATGGCCAACAGGCATAGGAAA  300

seq1  AGATGCACAATATCATTAGTCATTACAGAAATGCAACTTGAATGCAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACAATATCATTAGTCATTACAGAAATGCAACTTGAATGCAAAAC  350

seq1  CCGGAGCTCATAGACCATGAGAGTGAGCGAGTACAAGAGCAGACAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCTCATAGACCATGAGAGTGAGCGAGTACAAGAGCAGACAGTAAA  400

seq1  AAGTGCTGTCTGGGACATCCAGAAATCCAACCCTCTACATGCTGCCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGTCTGGGACATCCAGAAATCCAACCCTCTACATGCTGCCAAGG  450

seq1  GAATAAAACAGTACAGCCACTGCACAGCATGAAGAGGTATAAGGAGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACAGTACAGCCACTGCACAGCATGAAGAGGTATAAGGAGCTCT  500

seq1  CAAAAAACTGAGCATAGAAGTAGCACACAGACGGGCAGTGGTGGCGCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACTGAGCATAGAAGTAGCACACAGACGGGCAGTGGTGGCGCACG  550

seq1  CCTTTAATCCCAGCACTTAGGAGGCAGAGGCAGGCGGA-TTTCTGAGTTC  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTTTAATCCCAGCACTTAGGAGGCAGAGGCAGGCGGATTTTCTGAGTTC  600

seq1  AAGGCCAGTCTGGTCTATAGAGTGAGTTCCAGGACAGCCAG  640
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGTCTGGTCTATAGAGTGAGTTCCAGGACAGCCAG  641