BAC Information

Click to search

BAC

Clone NameB6Ng01-114I02
Chromosome12 (Build37)13 (Build37)
Map Location 87,888,155 - 87,888,31251,647,167 - 51,648,372
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneJundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb
Downstream geneLOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114I02.bB6Ng01-114I02.g
ACCDH920009DH920010
length7321,195
definitionDH920009|Mus musculus domesticus DNA, BAC clone: B6Ng01-114I02, 5' end.DH920010|Mus musculus domesticus DNA, BAC clone: B6Ng01-114I02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,888,155 - 87,888,312)(51,647,167 - 51,648,372)
sequence
gaattcctctgcatcctgaggaaagaaggcacaccgtcagcttcccacat
gggcgaagcagctgcacagggcttcccctgactcacacctttctacaaga
tccgcaaaaattctcagaggtgattattacacaacatctttgaactggct
ggttttgtgtcaacttgacacagctggagttatcacagagaaaggagctt
cagttggggagatgcctccatgagatccaactgtaaggcattttctcaat
tagtgatcaagggggaaaggccccctgtgggtgggaccatctctgggctg
gtagtcttagttctataagagagcaggctgagcaagccaggggaagcaag
ccagtaagtaccatccctccatggcctctgcatcagctcctgcttcctga
cctgcttgagttccagtcctgacttcctttggtgatgaacagcagtgtgg
aagtgtaagctgaataaaccccttcctccccaacttgcttcttttttttt
tgtttgtttttttgtttttgtttttttgtttttcgagacagggtttctct
gtgtagccctgactgtcctgaaactcactttgtacaccaggctggcctcg
aactcagaaatcctcctgcctctgcctcccgagtgctgggattaaaggcg
tgcatcaccacgcccggccccccacttgcttcttggtcatgatgtttgtg
taggaaatagaaaccctgactaaagggctggt
gaattcaaatagagactatgacaactggttgaccccctttcctataatcc
atggcttcctgcatctcttaaccagccccgagcagctagaacaaaatact
ccacagactgggatcctaagcagccaatatatgttacccacagctacata
ggcctgaagcccatggtaaaggtgtcagtagggctaatatgtggaaatag
ctgtgacatattgtataaagagggccattgaactctctggggtcctttca
ggaaggcaccagtgccatttacacactcatgacctaattacctctgaaag
ccccgtccccttatgctgttgccctaagggctaagattttccacatagga
agtttagagaacacaaacacataaccatagcacatcatgtaactcgcagc
ctcatattgtacatgtgacagtcctctctagattaccatttccttataag
tggagattattaattcatcacaggttttcaaggaccctgggctaaacagc
aagtacaatctccatatgaattgaagtggcaaatacaaggataaataggg
ttgtagggaccctgacaattagccaccacccgttggcacgggaggccagc
ttggttgtttatttgagctgagtctggaaggcttagagggcatcactcac
attggaatgagatgaggtgcaggttctctaagggagggagcctgagtcag
cccagagggacaataggaaaagaggttgttctatgtgggtggagctctgg
gagacagaggatagaaggtaaggaaggctccggctaaatggtgttctcat
ataaggaattctaattgagttctgtaaccaagggaaaaatgaagagcttt
tgttttaattagggcgacgagaagataggcaggaatttcagaaagatgaa
tgatgtttcacatcagctgagacgattttttaagcacacggttcacttat
tagacactggagagacatgggtgaaattcaagaacacttcagatcttatt
attactgaaactagggaaatccccctttgactctgaaagtttatgactgc
taagtgactcttgcatgggaattgcagcagattcatgggtgttagttggg
ggcaacttgtactgaacctcatggatacctcaagaaacggacacagcaac
ggactcggaacggggagaatactgctggtcactataaatggtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87888155_87888312
seq2: B6Ng01-114I02.b_553_710 (reverse)

seq1  GGGCGTGGTGATGCACGCCTTTAATCCCAGCACTCGGGAAGCAGAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGCGTGGTGATGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAG  50

seq1  GCGGATTTCTGAGTTGGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGA  100
      | ||||||||||||| |||| ||||||||| ||||||||||||| |||||
seq2  GAGGATTTCTGAGTTCGAGGCCAGCCTGGTGTACAAAGTGAGTTTCAGGA  100

seq1  CAGCCAGGGCTACACAGAGAAACCCAGTCTCAAAAAAAAAAAAAAAAAAA  150
      ||| ||||||||||||||||||||| ||||| ||||| ||||||| ||||
seq2  CAGTCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAAAACAAAA  150

seq1  AAAAAAAA  158
      | ||||||
seq2  ACAAAAAA  158

seq1: chr13_51647167_51648372
seq2: B6Ng01-114I02.g_70_1264

seq1  GAATTCAAATAGAGACTATGACAACTGGTTGACCCCCTTTCCTATAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAGAGACTATGACAACTGGTTGACCCCCTTTCCTATAATCC  50

seq1  ATGGCTTCCTGCATCTCTTAACCAGCCCCGAGCAGCTAGAACAAAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCCTGCATCTCTTAACCAGCCCCGAGCAGCTAGAACAAAATACT  100

seq1  CCACAGACTGGGATCCTAAGCAGCCAATATATGTTACCCACAGCTACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACTGGGATCCTAAGCAGCCAATATATGTTACCCACAGCTACATA  150

seq1  GGCCTGAAGCCCATGGTAAAGGTGTCAGTAGGGCTAATATGTGGAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAAGCCCATGGTAAAGGTGTCAGTAGGGCTAATATGTGGAAATAG  200

seq1  CTGTGACATATTGTATAAAGAGGGCCATTGAACTCTCTGGGGTCCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACATATTGTATAAAGAGGGCCATTGAACTCTCTGGGGTCCTTTCA  250

seq1  GGAAGGCACCAGTGCCATTTACACACTCATGACCTAATTACCTCTGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCACCAGTGCCATTTACACACTCATGACCTAATTACCTCTGAAAG  300

seq1  CCCCGTCCCCTTATGCTGTTGCCCTAAGGGCTAAGATTTTCCACATAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTCCCCTTATGCTGTTGCCCTAAGGGCTAAGATTTTCCACATAGGA  350

seq1  AGTTTAGAGAACACAAACACATAACCATAGCACATCATGTAACTCGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAGAACACAAACACATAACCATAGCACATCATGTAACTCGCAGC  400

seq1  CTCATATTGTACATGTGACAGTCCTCTCTAGATTACCATTTCCTTATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTGTACATGTGACAGTCCTCTCTAGATTACCATTTCCTTATAAG  450

seq1  TGGAGATTATTAATTCATCACAGGTTTTCAAGGACCCTGGGCTAAACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATTATTAATTCATCACAGGTTTTCAAGGACCCTGGGCTAAACAGC  500

seq1  AAGTACAATCTCCATATGAATTGAAGTGGCAAATACAAGGATAAATAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAATCTCCATATGAATTGAAGTGGCAAATACAAGGATAAATAGGG  550

seq1  TTGTAGGGACCCTGACAATTAGCCACCACCCGTTGGCACGGGAGGCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGGACCCTGACAATTAGCCACCACCCGTTGGCACGGGAGGCCAGC  600

seq1  TTGGTTGTTTATTTGAGCTGAGTCTGGAAGGCTTAGAGGGCATCACTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTTTATTTGAGCTGAGTCTGGAAGGCTTAGAGGGCATCACTCAC  650

seq1  ATTGGAATGAGATGAGGTGCAGGTTCTCTAAGGGAGGGAGCCTGAGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATGAGATGAGGTGCAGGTTCTCTAAGGGAGGGAGCCTGAGTCAG  700

seq1  CCCAGAGGGACAATAGGAAAAGAGGTTGTTCTATGTGGGTGGAGCTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGGACAATAGGAAAAGAGGTTGTTCTATGTGGGTGGAGCTCTGG  750

seq1  GAGACAGAGGATAGAAGGTAAGGAAGGCTCCGGCTAAATGGTGTTCTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGGATAGAAGGTAAGGAAGGCTCCGGCTAAATGGTGTTCTCAT  800

seq1  ATAAGGAATTCTAATTGAGTTCTGTAACCAAGGGAAAAATGAAGAGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAATTCTAATTGAGTTCTGTAACCAAGGGAAAAATGAAGAGCTTT  850

seq1  TGTTTTAATTAGGGCGACGAGAAGATAGGCAGGAATTTCAGAAAGATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAATTAGGGCGACGAGAAGATAGGCAGGAATTTCAGAAAGATGAA  900

seq1  TGATGTTTCACATCAGCTGAGAACGATTTTTTAAGCACACGGTTCACCTT  950
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TGATGTTTCACATCAGCTGAG-ACGATTTTTTAAGCACACGGTTCA-CTT  948

seq1  ATTAGACACTGGAAGAGACATGGGTGAAATTCAAGAACCACTTCAGATCT  1000
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  ATTAGACACTGG-AGAGACATGGGTGAAATTCAAGAA-CACTTCAGATCT  996

seq1  TATTATAACTGAAAACTAGGGAAATCCCCC-TTGACTTCTGAAAGTTTAT  1049
      |||||| |||| |||||||||||||||||| ||||| |||||||||||||
seq2  TATTATTACTG-AAACTAGGGAAATCCCCCTTTGAC-TCTGAAAGTTTAT  1044

seq1  AGACTGCTAAGTGACCTCTTGCATGGGAA-TGCAGCCAGATTCAT-GGTG  1097
       ||||||||||||| |||||||||||||| ||||| ||||||||| ||||
seq2  -GACTGCTAAGTGA-CTCTTGCATGGGAATTGCAG-CAGATTCATGGGTG  1091

seq1  TAGGTTGGGGCAAAACTGTGACTGACCTTCATGGGATCACCAC-AGACAC  1146
      |  |||||||  ||  ||| ||||| | |||| |||| ||| | ||| ||
seq2  TTAGTTGGGGGCAACTTGT-ACTGAACCTCAT-GGAT-ACCTCAAGAAAC  1138

seq1  AGACCAACAGCAGCAGCATCGAGAACGGGAAAGAATTACTGCTGGTCACT  1196
       |||  |||||| | |  ||| |||||||  |||| ||||||||||||||
seq2  GGAC--ACAGCAACGGACTCG-GAACGGG-GAGAA-TACTGCTGGTCACT  1183

seq1  A-AAAT-GTGCC  1206
      | |||| |||||
seq2  ATAAATGGTGCC  1195