BAC Information

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BAC

Clone NameB6Ng01-114I10
Chromosome13 (Build37)
Map Location 53,942,347 - 54,039,631
singlet/doubletdoublet
Overlap geneE130119H09Rik
Upstream geneAuh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760
Downstream geneDrd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114I10.bB6Ng01-114I10.g
ACCDH920025DH920026
length1,080924
definitionDH920025|Mus musculus domesticus DNA, BAC clone: B6Ng01-114I10, 5' end.DH920026|Mus musculus domesticus DNA, BAC clone: B6Ng01-114I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,942,347 - 53,943,441)(54,039,046 - 54,039,631)
sequence
gaattcataccatgtattacaatgtattacaaggtgatacaatgtgttac
aatgtattacaatgtgatacaacgtgatgcaatgcaggtgagtgttgcct
gttgtcaggcgaatttttttttttctgctcaatacatgacagctactgtg
acattaaaaatcagacatgtctttgtcctagggactgacatggccctaaa
gactactaggaaaaatccagatcaatacaggttcagtatacaactgtggt
agatccagggttttgtttttgtttttgtttttgttttgatttttttttag
ggttttcttccaaattagtgacactcttctctcaaatggacggaattgta
agtgcaacaccaatcataaaatgtttatatagaattagacaaacagacat
ttcagaccctgggccccacaaatgagcacacatttataaagtgtgtaagc
cagtccttgaagcccgtccccacaaccctggattcaggcaaccattgttg
aaactgcctgttctgtttgtctaccaaaccattactctaaacatggaagg
ctgttcctcactcagagaaatttacctttggaattcttgacttgcatggt
gtattagtcagggttctctagagtcacagaacttatggatagtatctaga
tagtaaaggaatttattgatgacttacagtcggcagcccaattcccaaca
attgttcagtcacagctgtgaatggaagtccaaggatctagcagttactc
agtctcatgcagcaagcaggcgaaggagcaagagcaagagctagactccc
ttcttccaatgtccttatattgtctccagcagaaggtgtagcccagatta
aggtgtgttccaccacaccttttattccagatgaaaggcatagcccagat
taaaggggtgttccttaaactcggagattcaatcttctggaatccatagt
cactatggctcagatcttcataccagatcagataggatctcaagctccag
atagggtcactggtgagctttcattccggattgtagttcatccaatattg
tagtgacaacaggattagccactacacatg
gaattcccatatttgtatgtgtagctgagttttctgtttggtgtctcaca
gagagatgaagatgttggtgggattgtgtagacctaaggttcacgattcc
ctttaaatgttacatggctcttgggagaatccaattccacatagcactga
actgaggccttcattgtcttgttggcttttgtccaaggataacattatct
cctagagcttgtccttaggtcctcttgtgaccaattgcttctccaaagct
agctatagaatttctccttcaaatctctcaaatcccctttaaaggtacaa
ctgggcattagacaccatccatgaaatctctcttcaaaagagaaataaaa
atcttctgactacagatcttaattaatttcccaaagcttcttattcaaag
aagtgctatatttttacatttatagtttcagctctcactccagggaggag
attgtaaagctgtatggacacatagcagtccaaccagaagacccagatgc
cagctgaagcccgagggcctgaaagtgatggcttaattatgatggctaaa
ctcttgggtagactcttcccaccagacaaagtctgaatgattagctattc
tgtttgagtttgaaaaggaatagccctggaaaatacttaaggtctggctt
ttctagcctcctgtcaggctttagatgtggtccaagggtgacggcctcat
ctgttttcgtgtctttcatgtaattctctatgctaaaatgctaaaaaaaa
aaaatccaattaaggaacattgaagacgttctgcttgactctcttattgc
taagaggtgcaagctccttgggctattatggtttttctaaatgtgttacc
actgctctacagagaccctattgttctggtcttcagggcagctttccagc
tccttccccttccccttccttcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_53942347_53943441
seq2: B6Ng01-114I10.b_46_1124

seq1  GAATTCATACCATGTATTACAATGTATTACAAGGTGATACAATGTGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCATGTATTACAATGTATTACAAGGTGATACAATGTGTTAC  50

seq1  AATGTATTACAATGTGATACAACGTGATGCAATGCAGGTGAGTGTTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTACAATGTGATACAACGTGATGCAATGCAGGTGAGTGTTGCCT  100

seq1  GTTGTCAGGCGAATTTTTTTTTTTCTGCTCAATACATGACAGCTACTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGGCGAATTTTTTTTTTTCTGCTCAATACATGACAGCTACTGTG  150

seq1  ACATTAAAAATCAGACATGTCTTTGTCCTAGGGACTGACATGGCCCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAAATCAGACATGTCTTTGTCCTAGGGACTGACATGGCCCTAAA  200

seq1  GACTACTAGGAAAAATCCAGATCAATACAGGTTCAGTATACAACTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTAGGAAAAATCCAGATCAATACAGGTTCAGTATACAACTGTGGT  250

seq1  AGATCCAGGGTTTTGTTTTTGTTTTTGTTTTTGTTTTGATTTTTTTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGGGTTTTGTTTTTGTTTTTGTTTTTGTTTTGATTTTTTTTTAG  300

seq1  GGTTTTCTTCCAAATTAGTGACACTCTTCTCTCAAATGGACGGAATTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTTCCAAATTAGTGACACTCTTCTCTCAAATGGACGGAATTGTA  350

seq1  AGTGCAACACCAATCATAAAATGTTTATATAGAATTAGACAAACAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAACACCAATCATAAAATGTTTATATAGAATTAGACAAACAGACAT  400

seq1  TTCAGACCCTGGGCCCCACAAATGAGCACACATTTATAAAGTGTGTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACCCTGGGCCCCACAAATGAGCACACATTTATAAAGTGTGTAAGC  450

seq1  CAGTCCTTGAAGCCCGTCCCCACAACCCTGGATTCAGGCAACCATTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTGAAGCCCGTCCCCACAACCCTGGATTCAGGCAACCATTGTTG  500

seq1  AAACTGCCTGTTCTGTTTGTCTACCAAACCATTACTCTAAACATGGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCCTGTTCTGTTTGTCTACCAAACCATTACTCTAAACATGGAAGG  550

seq1  CTGTTCCTCACTCAGAGAAATTTACCTTTGGAATTCTTGACTTGCATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTCACTCAGAGAAATTTACCTTTGGAATTCTTGACTTGCATGGT  600

seq1  GTATTAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGATAGTATCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGATAGTATCTAGA  650

seq1  TAGTAAAGGAATTTATTGATGACTTACAGTCGGCAGCCCAATTCCCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGGAATTTATTGATGACTTACAGTCGGCAGCCCAATTCCCAACA  700

seq1  ATTGTTCAGTCACAGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCAGTCACAGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTACTC  750

seq1  AGTCTCATGCAGCAAGCAGGCGAAGGAGCAAGAGCAAGAGCTAGACTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATGCAGCAAGCAGGCGAAGGAGCAAGAGCAAGAGCTAGACTCCC  800

seq1  TTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGGTGTAGCCCAGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGGTGTAGCCCAGATT-  849

seq1  AAGGTGTGTTCCACCACACCTTTAATCCCAGATGAAAGGCATAGCCCAGA  900
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  AAGGTGTGTTCCACCACACCTTTTATTCCAGATGAAAGGCATAGCCCAGA  899

seq1  TTAAAGGTGTGTTCCTTAAACTCGGAGATTCAATCTTCTGGAATCCATAG  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGGGTGTTCCTTAAACTCGGAGATTCAATCTTCTGGAATCCATAG  949

seq1  TCACTATGGCTCAAGATCTCCATACCAAGATCCAGATAAGGATCTCCAAG  1000
      |||||||||||| |||||| |||||| |||| ||||| ||||||| ||||
seq2  TCACTATGGCTC-AGATCTTCATACC-AGAT-CAGAT-AGGATCT-CAAG  994

seq1  CCTCCAGATAAGGGTCACTGGTGAGCCTTCCAATTCCGGATTGTAGTTCA  1050
       |||||||| |||||||||||||||| |||  ||||||||||||||||||
seq2  -CTCCAGAT-AGGGTCACTGGTGAGCTTTC--ATTCCGGATTGTAGTTCA  1040

seq1  TTCCAAATATTGTCAAGTTGACAACCAGGAATAGCCACTACACAT  1095
      |  | ||||||||  || |||||| ||||| ||||||||||||||
seq2  T--CCAATATTGT--AG-TGACAA-CAGGATTAGCCACTACACAT  1079

seq1: chr13_54039046_54039631
seq2: B6Ng01-114I10.g_405_990 (reverse)

seq1  GGGAAGGAAGGGGAAGGGGAAGGAGCTGGAAAGCTGCCCTGAAGACCAGA  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGAAGGGGAAGGGGAAGGAGCTGGAAAGCTGCCCTGAAGACCAGA  50

seq1  ACAATAGGGTCTCTGTAGAGCAGTGGTAACACATTTAGAAAAACCATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGGGTCTCTGTAGAGCAGTGGTAACACATTTAGAAAAACCATAAT  100

seq1  AGCCCAAGGAGCTTGCACCTCTTAGCAATAAGAGAGTCAAGCAGAACGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGGAGCTTGCACCTCTTAGCAATAAGAGAGTCAAGCAGAACGTC  150

seq1  TTCAATGTTCCTTAATTGGATTTTTTTTTTTTAGCATTTTAGCATAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTTCCTTAATTGGATTTTTTTTTTTTAGCATTTTAGCATAGAGA  200

seq1  ATTACATGAAAGACACGAAAACAGATGAGGCCGTCACCCTTGGACCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGAAAGACACGAAAACAGATGAGGCCGTCACCCTTGGACCACAT  250

seq1  CTAAAGCCTGACAGGAGGCTAGAAAAGCCAGACCTTAAGTATTTTCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCCTGACAGGAGGCTAGAAAAGCCAGACCTTAAGTATTTTCCAGG  300

seq1  GCTATTCCTTTTCAAACTCAAACAGAATAGCTAATCATTCAGACTTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCTTTTCAAACTCAAACAGAATAGCTAATCATTCAGACTTTGTC  350

seq1  TGGTGGGAAGAGTCTACCCAAGAGTTTAGCCATCATAATTAAGCCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGAAGAGTCTACCCAAGAGTTTAGCCATCATAATTAAGCCATCAC  400

seq1  TTTCAGGCCCTCGGGCTTCAGCTGGCATCTGGGTCTTCTGGTTGGACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCCCTCGGGCTTCAGCTGGCATCTGGGTCTTCTGGTTGGACTGC  450

seq1  TATGTGTCCATACAGCTTTACAATCTCCTCCCTGGAGTGAGAGCTGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCCATACAGCTTTACAATCTCCTCCCTGGAGTGAGAGCTGAAAC  500

seq1  TATAAATGTAAAAATATAGCACTTCTTTGAATAAGAAGCTTTGGGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGTAAAAATATAGCACTTCTTTGAATAAGAAGCTTTGGGAAATT  550

seq1  AATTAAGATCTGTAGTCAGAAGATTTTTATTTCTCT  586
      ||||||||||||||||||||||||||||||||||||
seq2  AATTAAGATCTGTAGTCAGAAGATTTTTATTTCTCT  586