BAC Information

Click to search

BAC

Clone NameB6Ng01-114K05
Chromosome13 (Build37)
Map Location 100,338,610 - 100,507,449
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114K05.bB6Ng01-114K05.g
ACCDH920111DH920112
length1,0901,006
definitionDH920111|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K05, 5' end.DH920112|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,506,350 - 100,507,449)(100,338,610 - 100,339,624)
sequence
gaattcttcttataagctaatttatcagaattgaagcctgaagcataaag
gggtgagagggaaagctttctgagtcgagggaacatcgagtacaaagctg
tttcagggtagagaatttggcaggctatgggaactgcaatctgttttaat
agatttagagcacagaacacaaaagggggcagagagtgaaagaaatgatg
cccgtaggagggaatgtggatagagaatcctatcagtcatggccatgagt
ttgggttcagagagtttaaagcagaagaggggcaatcagagactcagagt
ttggaagcttcttccagccttgggggagaagccaggctgagggaggcaag
actccctgaagtaagagagcaactggggatcacaatgaagccctgcaatt
aagtggaggtcatgacaaggaagcaggcaagtcaacactgaggaagagac
acaatggcagcctgtgctaggtcaaacgtgatgaagctgaggttgaagga
ggtttccatgtcctgggtgtttgttacccaggaagggtgacggatttgta
ggaggaaccactgacttctcactaagtctcaccaagtgacaagtctaggt
agaagtagaactttgggaaaactgggggagtgagctacttgggagaatga
aaagagaaaggcaagaagagagaggaccacagaaccctgggcaatctaca
ttcactgaggatcaatggcagagtgactgaaaaggaaccgtgttgtcagg
catggtgtcacatgcctataatcccagaactcatgaggcagagacaggaa
gcctgggtgttcaagaccagcctgggctaccagggagagagcctctttaa
aaatgacctaacagaggaaaccaaaggaaacagccagaaaaaacaaagaa
aacctcgagtcctgttgccacaccgacagattcaaggctttacacacttc
tagaaggaggggtgcccactagaccatgatggagaagctcctgtcttaca
gggactttcctggtggaataagagtagagggtgtcagagctgatggaagt
ctgtagttgatgctttaaaatctggtctcaaagagagaga
gaattcacctgtaggtcaccatatccttggatttatcagctgtttgggtt
cctcttgagcaaatactcaaatcagtatttaggattattttgtcagcctc
tgaagaaaccttgtaaccattagcaaccagttttgacttctgcacttcct
ttgttaacttttaatctctgttttgtttctccaagcttgcctactctgga
catttcatattaattgaatatgaacactgtgagagaaagaagtaaggtgt
atgcccccattaaagcaattgagcaggaagaacacaggatcttcattggc
ataattcatgtacttacatgcatgtgtatcacttctggacaaagctgatg
aatgtattaagatgtatactaaaacctctgcttctaatataaatctggag
gtaattttccaaataaaacctgatccacttgtaccaacttgcttccatcg
taacagaaaaattaaaagggacattttctacagcttgatgtgtgtgtgtg
cgtgtgcgtgtgcgtgtgtgtgttgtattggggatcatactcagggtctt
acacatgctggacagtaccctgatgctgggtacacatctagtctttgcct
ggtgtctttagaggtctttactaacttctaatagatgtacatgtgtgtgt
ttgtgtgtgtttgcgcatgcacatgtgggtgctcatgcatatggaggcca
ggcatcaactttgagtatcgttcctcaggtgttgtccaccatggttttga
aattaggtctctcattatactgaactggctgattaggctggaccatgagc
cagcctgatggtcaatgagccagtttcatctgtcagtatctctccagcac
tgggattgcaagcacaagctaccaccccttaaatctacttaagatggggt
gcagtaccataaatatacactattaaagtgttacccttagcagttttatt
attctcgcatgtgtgtgactatcatatccatttaaaacattttctcactt
acaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100506350_100507449
seq2: B6Ng01-114K05.b_44_1133 (reverse)

seq1  --TCTCTCTCTGA-ACCAGATTTTTAAAGCATCAACTACAGACTCTTCCA  47
        ||||||| ||| |||||| |||||||||||||||||||||  ||||||
seq2  TCTCTCTCTTTGAGACCAGA-TTTTAAAGCATCAACTACAGA--CTTCCA  47

seq1  TCAGCTTCCTGACACACCTTCTACTCCTTATTCCACCAGGAAAGTCCCCT  97
      ||||||  |||  ||||| |||||| ||||||||||||||||||| ||||
seq2  TCAGCT--CTG--ACACCCTCTACT-CTTATTCCACCAGGAAAGT-CCCT  91

seq1  GTAAGACAGGAGCTTCTCCATCATGGTCTAGTGGGCACCCCTCCTTCTAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACAGGAGCTTCTCCATCATGGTCTAGTGGGCACCCCTCCTTCTAG  141

seq1  AAGTGTGTAAAGCCTTGAATCCTGTCGGTGTGGCAACAGGACTCGAGGTT  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGTGTGTAAAGCCTTGAAT-CTGTCGGTGTGGCAACAGGACTCGAGGTT  190

seq1  TTCTTTTGTTTTTTTCTGGCTGTTTCCTTTGGTTTCCTCTGTTAGGTCAT  247
      ||||||   |||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTTT--GTTTTTTCTGGCTGTTTCCTTTGGTTTCCTCTGTTAGGTCA-  237

seq1  TTTTTAAAGAGGCTCTCTCCCTGGTAGCCCAGGCTGGTCTTGAACACCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGAGGCTCTCTCCCTGGTAGCCCAGGCTGGTCTTGAACACCCA  287

seq1  GGCTTCCTGTCTCTGCCTCCTGAGTTCTGGGATTATAGGCATGTGACACC  347
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCTTCCTGTCTCTGCCTCATGAGTTCTGGGATTATAGGCATGTGACACC  337

seq1  ATGCCTGACAACACGGTTCCTTTTCAGTCACTCTGCCATTGATCCTCAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGACAACACGGTTCCTTTTCAGTCACTCTGCCATTGATCCTCAGT  387

seq1  GAATGTAGATTGCCCAGGGTTCTGTGGTCCTCTCTCTTCTTGCCTTTCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGATTGCCCAGGGTTCTGTGGTCCTCTCTCTTCTTGCCTTTCTC  437

seq1  TTTTCATTCTCCCAAGTAGCTCACTCCCCCAGTTTTCCCAAAGTTCTACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCTCCCAAGTAGCTCACTCCCCCAGTTTTCCCAAAGTTCTACT  487

seq1  TCTACCTAGACTTGTCACTTGGTGAGACTTAGTGAGAAGTCAGTGGTTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTAGACTTGTCACTTGGTGAGACTTAGTGAGAAGTCAGTGGTTCC  537

seq1  TCCTACAAATCCGTCACCCTTCCTGGGTAACAAACACCCAGGACATGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAAATCCGTCACCCTTCCTGGGTAACAAACACCCAGGACATGGAA  587

seq1  ACCTCCTTCAACCTCAGCTTCATCACGTTTGACCTAGCACAGGCTGCCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTTCAACCTCAGCTTCATCACGTTTGACCTAGCACAGGCTGCCAT  637

seq1  TGTGTCTCTTCCTCAGTGTTGACTTGCCTGCTTCCTTGTCATGACCTCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCTTCCTCAGTGTTGACTTGCCTGCTTCCTTGTCATGACCTCCA  687

seq1  CTTAATTGCAGGGCTTCATTGTGATCCCCAGTTGCTCTCTTACTTCAGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGCAGGGCTTCATTGTGATCCCCAGTTGCTCTCTTACTTCAGGG  737

seq1  AGTCTTGCCTCCCTCAGCCTGGCTTCTCCCCCAAGGCTGGAAGAAGCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGCCTCCCTCAGCCTGGCTTCTCCCCCAAGGCTGGAAGAAGCTTC  787

seq1  CAAACTCTGAGTCTCTGATTGCCCCTCTTCTGCTTTAAACTCTCTGAACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTGAGTCTCTGATTGCCCCTCTTCTGCTTTAAACTCTCTGAACC  837

seq1  CAAACTCATGGCCATGACTGATAGGATTCTCTATCCACATTCCCTCCTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCATGGCCATGACTGATAGGATTCTCTATCCACATTCCCTCCTAC  887

seq1  GGGCATCATTTCTTTCACTCTCTGCCCCCTTTTGTGTTCTGTGCTCTAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCATTTCTTTCACTCTCTGCCCCCTTTTGTGTTCTGTGCTCTAAA  937

seq1  TCTATTAAAACAGATTGCAGTTCCCATAGCCTGCCAAATTCTCTACCCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAAACAGATTGCAGTTCCCATAGCCTGCCAAATTCTCTACCCTG  987

seq1  AAACAGCTTTGTACTCGATGTTCCCTCGACTCAGAAAGCTTTCCCTCTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTTTGTACTCGATGTTCCCTCGACTCAGAAAGCTTTCCCTCTCA  1037

seq1  CCCCTTTATGCTTCAGGCTTCAATTCTGATAAATTAGCTTATAAGAAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTATGCTTCAGGCTTCAATTCTGATAAATTAGCTTATAAGAAGAA  1087

seq1  TTC  1100
      |||
seq2  TTC  1090

seq1: chr13_100338610_100339624
seq2: B6Ng01-114K05.g_68_1073

seq1  GAATTCACCTGTAGGTCACCATATCCTTGGATTTATCAGCTGTTTGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGTAGGTCACCATATCCTTGGATTTATCAGCTGTTTGGGTT  50

seq1  CCTCTTGAGCAAATACTCAAATCAGTATTTAGGATTATTTTGTCAGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAGCAAATACTCAAATCAGTATTTAGGATTATTTTGTCAGCCTC  100

seq1  TGAAGAAACCTTGTAACCATTAGCAACCAGTTTTGACTTCTGCACTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAACCTTGTAACCATTAGCAACCAGTTTTGACTTCTGCACTTCCT  150

seq1  TTGTTAACTTTTAATCTCTGTTTTGTTTCTCCAAGCTTGCCTACTCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAACTTTTAATCTCTGTTTTGTTTCTCCAAGCTTGCCTACTCTGGA  200

seq1  CATTTCATATTAATTGAATATGAACACTGTGAGAGAAAGAAGTAAGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATATTAATTGAATATGAACACTGTGAGAGAAAGAAGTAAGGTGT  250

seq1  ATGCCCCCATTAAAGCAATTGAGCAGGAAGAACACAGGATCTTCATTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCCATTAAAGCAATTGAGCAGGAAGAACACAGGATCTTCATTGGC  300

seq1  ATAATTCATGTACTTACATGCATGTGTATCACTTCTGGACAAAGCTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCATGTACTTACATGCATGTGTATCACTTCTGGACAAAGCTGATG  350

seq1  AATGTATTAAGATGTATACTAAAACCTCTGCTTCTAATATAAATCTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTAAGATGTATACTAAAACCTCTGCTTCTAATATAAATCTGGAG  400

seq1  GTAATTTTCCAAATAAAACCTGATCCACTTGTACCAACTTGCTTCCATCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTCCAAATAAAACCTGATCCACTTGTACCAACTTGCTTCCATCG  450

seq1  TAACAGAAAAATTAAAAGGGACATTTTCTACAGCTTGATGTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAAAATTAAAAGGGACATTTTCTACAGCTTGATGTGTGTGTGTG  500

seq1  CGTGTGCGTGTGCGTGTGTGTGTTGTATTGGGGATCATACTCAGGGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCGTGTGCGTGTGTGTGTTGTATTGGGGATCATACTCAGGGTCTT  550

seq1  ACACATGCTGGACAGTACCCTGATGCTGGGTACACATCTAGTCTTTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCTGGACAGTACCCTGATGCTGGGTACACATCTAGTCTTTGCCT  600

seq1  GGTGTCTTTAGAGGTCTTTACTAACTTCTAATAGATGTACATGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTTAGAGGTCTTTACTAACTTCTAATAGATGTACATGTGTGTGT  650

seq1  TTGTGTGTGTTTGCGCATGCACATGTGGGTGCTCATGCATATGGAGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTTTGCGCATGCACATGTGGGTGCTCATGCATATGGAGGCCA  700

seq1  GGCATCAACTTTGAGTATCGTTCCTCAGGTGTTGTCCACCATGGTTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAACTTTGAGTATCGTTCCTCAGGTGTTGTCCACCATGGTTTTGA  750

seq1  AATTAGGTCTCTCATTATACTGAACTGGCTGATTAGGCTGGACCATGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGTCTCTCATTATACTGAACTGGCTGATTAGGCTGGACCATGAGC  800

seq1  CAGCCTGATGGTCAATGAGCCAGTTTCATCTGTCAGTATCTCTCCAGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGATGGTCAATGAGCCAGTTTCATCTGTCAGTATCTCTCCAGCAC  850

seq1  TGGGATTGCAAGCACAAGCTACCACCCCTTAAAATCTACTTAAGATGGGG  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGGATTGCAAGCACAAGCTACCACCCCTT-AAATCTACTTAAGATGGGG  899

seq1  TGCAAGTACCATAAATATACACTATTAAAGTGTATACCTTAGCAGGTTTT  950
      ||| |||||||||||||||||||||||||||||   |||||||| |||||
seq2  TGC-AGTACCATAAATATACACTATTAAAGTGTTACCCTTAGCA-GTTTT  947

seq1  ATTATTCTCGCATGTTGTGTGACTATCATTATCCAATTTTATAACATTTT  1000
      |||||||||||||| ||||||||||||| ||||||  |||| ||||||||
seq2  ATTATTCTCGCATG-TGTGTGACTATCA-TATCCA--TTTAAAACATTTT  993

seq1  CATCACCTTACAAGA  1015
      | ||| |||||||||
seq2  C-TCA-CTTACAAGA  1006