BAC Information

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BAC

Clone NameB6Ng01-115E11
Chromosome13 (Build37)
Map Location 13,500,584 - 13,631,674
singlet/doubletdoublet
Overlap geneLOC664960, Nid1
Upstream geneHeatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b
Downstream geneLyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115E11.bB6Ng01-115E11.g
ACCDH920583DH920584
length1,1471,116
definitionDH920583|Mus musculus domesticus DNA, BAC clone: B6Ng01-115E11, 5' end.DH920584|Mus musculus domesticus DNA, BAC clone: B6Ng01-115E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,630,508 - 13,631,674)(13,500,584 - 13,501,713)
sequence
gaattcaacgtcagcctcagctatatagtcagtccaagtacaacctgaaa
ccctgtctcaccctatccccagcccccaaaagaagtatatgggggagagg
cagagtaaaagtgtaacaaaaatgatgacattttatattaatttgtggct
tacagtttcacattaatttgatccttttcaaaacctccatagagctagag
atgagtgaattgagcccttttttatagtcagtggaaagacttctgcagac
ctaatcaagggccaagctgtgagccagtgggcagcagagttcagatttgg
atgtagctccagccaactccaaggccagggctccttgcttgcctggcctc
ctgttcataatccctgttttacagatacagaaatggaagctgagagatgt
tagctgactttacagagacacacatctactctggtaaaggcagaatccag
gcctggatttgggcttcctatctacccaagctgtgggtgcaaagtgcctg
gaaggaacactctgaaactggctcagactctctaagcttggggctctcac
gataaggaggctgagccttcagcacaggaaattagtcaggcctttggaaa
agagccaaggaccagcaggaagctcggtgtgggcctgaaaggagtgatat
gcagtaaaacaacaagctcagtgatgttgacagaatcacttgatggtctg
attaagaggcatgagttgtcactcgtgatgggcactgagaaagctggtct
ggagacatcagctggacaggcagccatgcgcatttctgagcagtcagggc
tgcagacttaccaagtaggctgtacttgaaagaagagggggtgggggccg
cggggaggtagcatcagttggcacatgctgacaaccttccagatgctggc
tggaaaccagctacctgcgcatttcacctgctgctccagcctttattcag
tctgggccttttgtctgtttaattgagtgtcttgaacactctgctgttta
gcaaagcgagactgaactgtgactagcctcctatttcatatccggaatgc
tgggatgcagagtcagcatgcttatagatcttcaccattcgactgactca
actgtgagtagacaagatgattgagcttctgatcttcagcatcacct
gaattctaggaacacaaaagagggggctagttagtctgccttacacaaac
cattagagatcttgtgtcaataaaggtgggaggtgaggactacacctgag
attgtcctctgacctccataccttggtataagtataatacctgcacatac
acacatatacagagagagagagagagagagagagagagagagagagagag
agagagagaaagagaaagagagaaacagagacagatagacagagacagag
agagatagacagacagagagaccgagacagagaatttcaattatatatgc
gattcatcctatatctccatggataggtccattctatactctcagaatct
agaaacttgcagacattctctttctgcaaccctcccttcctctctctggg
tgttactgtgtatacgttacaagactgatactcttcaaggaaaccacata
taaggaaccaatctggctttacataggtcccaaacagagtgactttgtat
cctagaaataactccatcaaaaccagaacgcctaagcatagtgcagtggc
atatattcgaaatcccagcacttaaaatatgaaaacaaggggatcaggag
ttcaaagccagcctcaccctcaactttataaaaagttcaattctaacctg
ggatccatgaagcactgtctcaagaaacaaaataaataaaaatgaggaca
cctggaataccagccatggtgaggtagatgcaggaggaacaggagtttaa
ggtgagcctcagataactgagtgtctgacacactgaaaaagaaaaaaaag
ggagatctagaagatggggttggggtgcagtgatacactgccctccagat
atgacatggccattgtactcatgacatactcttgcctacacaaggcctgt
caatattccaataggatgaaaccctgtataggagtccagcatatggctga
tctggcaagagatcacatctgaagacattctagatctattgtgatctgac
tggggtgcagacacactggaagcagttgtgtgagggcatctattgagggg
caatacaaaggtggcattagagaaagaattgcagatgagctagaaaccca
ctcttgtgaacagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13630508_13631674
seq2: B6Ng01-115E11.b_45_1191 (reverse)

seq1  AGGTGATGGCTGGAGGATCAGAAGCTCAAAATCATCTTTGTCTACTTCAC  50
      ||||||| ||| || ||||||||||||  ||||||| |||||||| ||||
seq2  AGGTGAT-GCT-GAAGATCAGAAGCTC--AATCATC-TTGTCTAC-TCAC  44

seq1  AAGTTTGAGGTCAGTCTGAAATGTGTGAGATCTTATAGGCATGCTGACTC  100
      |   |||| ||||||| |||  |||  ||||| |||| ||||||||||| 
seq2  A--GTTGA-GTCAGTC-GAATGGTG-AAGATC-TATAAGCATGCTGACT-  87

seq1  CTGCAATCCCAGCATTCCGGATATTGAAATAGGAGGCTAGTCACAAGTTC  150
      |||| |||||||||||||||||| |||||||||||||||||||| |||||
seq2  CTGC-ATCCCAGCATTCCGGATA-TGAAATAGGAGGCTAGTCAC-AGTTC  134

seq1  AAGTCTCGCTTTGCTAAACAGCAAGAGTTGTTCCAAGACACTCAATTAAA  200
       ||||||||||||||||||||| |||| |||| |||||||||||||||||
seq2  -AGTCTCGCTTTGCTAAACAGC-AGAG-TGTT-CAAGACACTCAATTAAA  180

seq1  CAGACAAAAGGCCCAGACTGAATAAAGGCTGGAGCAGCAGGTGAAATGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAAAGGCCCAGACTGAATAAAGGCTGGAGCAGCAGGTGAAATGCG  230

seq1  CAGGTAGCTGGTTTCCAGCCAGCATCTGGAAGGTTGTCAGCATGTGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCTGGTTTCCAGCCAGCATCTGGAAGGTTGTCAGCATGTGCCAA  280

seq1  CTGATGCTACCTCCCCGCGGCCCCCACCCCCTCTTCTTTCAAGTACAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTACCTCCCCGCGGCCCCCACCCCCTCTTCTTTCAAGTACAGCC  330

seq1  TACTTGGTAAGTCTGCAGCCCTGACTGCTCAGAAATGCGCATGGCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGTAAGTCTGCAGCCCTGACTGCTCAGAAATGCGCATGGCTGCCT  380

seq1  GTCCAGCTGATGTCTCCAGACCAGCTTTCTCAGTGCCCATCACGAGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCTGATGTCTCCAGACCAGCTTTCTCAGTGCCCATCACGAGTGAC  430

seq1  AACTCATGCCTCTTAATCAGACCATCAAGTGATTCTGTCAACATCACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGCCTCTTAATCAGACCATCAAGTGATTCTGTCAACATCACTGA  480

seq1  GCTTGTTGTTTTACTGCATATCACTCCTTTCAGGCCCACACCGAGCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTGTTTTACTGCATATCACTCCTTTCAGGCCCACACCGAGCTTCC  530

seq1  TGCTGGTCCTTGGCTCTTTTCCAAAGGCCTGACTAATTTCCTGTGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTCCTTGGCTCTTTTCCAAAGGCCTGACTAATTTCCTGTGCTGAA  580

seq1  GGCTCAGCCTCCTTATCGTGAGAGCCCCAAGCTTAGAGAGTCTGAGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCCTCCTTATCGTGAGAGCCCCAAGCTTAGAGAGTCTGAGCCAG  630

seq1  TTTCAGAGTGTTCCTTCCAGGCACTTTGCACCCACAGCTTGGGTAGATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGTGTTCCTTCCAGGCACTTTGCACCCACAGCTTGGGTAGATAG  680

seq1  GAAGCCCAAATCCAGGCCTGGATTCTGCCTTTACCAGAGTAGATGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCAAATCCAGGCCTGGATTCTGCCTTTACCAGAGTAGATGTGTGT  730

seq1  CTCTGTAAAGTCAGCTAACATCTCTCAGCTTCCATTTCTGTATCTGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAAAGTCAGCTAACATCTCTCAGCTTCCATTTCTGTATCTGTAAA  780

seq1  ACAGGGATTATGAACAGGAGGCCAGGCAAGCAAGGAGCCCTGGCCTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGATTATGAACAGGAGGCCAGGCAAGCAAGGAGCCCTGGCCTTGGA  830

seq1  GTTGGCTGGAGCTACATCCAAATCTGAACTCTGCTGCCCACTGGCTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTGGAGCTACATCCAAATCTGAACTCTGCTGCCCACTGGCTCACA  880

seq1  GCTTGGCCCTTGATTAGGTCTGCAGAAGTCTTTCCACTGACTATAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCCCTTGATTAGGTCTGCAGAAGTCTTTCCACTGACTATAAAAAA  930

seq1  GGGCTCAATTCACTCATCTCTAGCTCTATGGAGGTTTTGAAAAGGATCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAATTCACTCATCTCTAGCTCTATGGAGGTTTTGAAAAGGATCAA  980

seq1  ATTAATGTGAAACTGTAAGCCACAAATTAATATAAAATGTCATCATTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTGAAACTGTAAGCCACAAATTAATATAAAATGTCATCATTTTT  1030

seq1  GTTACACTTTTACTCTGCCTCTCCCCCATATACTTCTTTTGGGGGCTGGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACTTTTACTCTGCCTCTCCCCCATATACTTCTTTTGGGGGCTGGG  1080

seq1  GATAGGGTGAGACAGGGTTTCAGGTTGTACTTGGACTGACTATATAGCTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGTGAGACAGGGTTTCAGGTTGTACTTGGACTGACTATATAGCTG  1130

seq1  AGGCTGACGTTGAATTC  1167
      |||||||||||||||||
seq2  AGGCTGACGTTGAATTC  1147

seq1: chr13_13500584_13501713
seq2: B6Ng01-115E11.g_68_1183

seq1  GAATTCTAGGAACACAAAAGAGGGGGCTAGTTAGTCTGCCTTACACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAACACAAAAGAGGGGGCTAGTTAGTCTGCCTTACACAAAC  50

seq1  CATTAGAGATCTTGTGTCAATAAAGGTGGGAGGTGAGGACTACACCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAGATCTTGTGTCAATAAAGGTGGGAGGTGAGGACTACACCTGAG  100

seq1  ATTGTCCTCTGACCTCCATACCTTGGTATAAGTATAATACCTGCACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTCTGACCTCCATACCTTGGTATAAGTATAATACCTGCACATAC  150

seq1  ACACATATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  200

seq1  AGAGAGAGAAAGAGAAAGAGAGAAACAGAGACAGATAGACAGAGACAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAGAGAAAGAGAGAAACAGAGACAGATAGACAGAGACAGAG  250

seq1  AGAGATAGACAGACAGAGAGACCGAGACAGAGAATTTCAATTATATATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGACAGACAGAGAGACCGAGACAGAGAATTTCAATTATATATGC  300

seq1  GATTCATCCTATATCTCCATGGATAGGTCCATTCTATACTCTCAGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATCCTATATCTCCATGGATAGGTCCATTCTATACTCTCAGAATCT  350

seq1  AGAAACTTGCAGACATTCTCTTTCTGCAACCCTCCCTTCCTCTCTCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTGCAGACATTCTCTTTCTGCAACCCTCCCTTCCTCTCTCTGGG  400

seq1  TGTTACTGTGTATACGTTACAAGACTGATACTCTTCAAGGAAACCACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGTGTATACGTTACAAGACTGATACTCTTCAAGGAAACCACATA  450

seq1  TAAGGAACCAATCTGGCTTTACATAGGTCCCAAACAGAGTGACTTTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAACCAATCTGGCTTTACATAGGTCCCAAACAGAGTGACTTTGTAT  500

seq1  CCTAGAAATAACTCCATCAAAACCAGAACGCCTAAGCATAGTGCAGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAATAACTCCATCAAAACCAGAACGCCTAAGCATAGTGCAGTGGC  550

seq1  ATATATTCGAAATCCCAGCACTTAAAATATGAAAACAAGGGGATCAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCGAAATCCCAGCACTTAAAATATGAAAACAAGGGGATCAGGAG  600

seq1  TTCAAAGCCAGCCTCACCCTCAACTTTATAAAAAGTTCAATTCTAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCCAGCCTCACCCTCAACTTTATAAAAAGTTCAATTCTAACCTG  650

seq1  GGATCCATGAAGCACTGTCTCAAGAAACAAAATAAATAAAAATGAGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATGAAGCACTGTCTCAAGAAACAAAATAAATAAAAATGAGGACA  700

seq1  CCTGGAATACCAGCCATGGTGAGGTAGATGCAGGAGGAACAGGAGTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATACCAGCCATGGTGAGGTAGATGCAGGAGGAACAGGAGTTTAA  750

seq1  GGTGAGCCTCAGATAACTGAGTGTCTGACACACTGAAAAAGAAAAAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCCTCAGATAACTGAGTGTCTGACACACTGAAAAAGAAAAAAAAG  800

seq1  GGAGATCTAGAAGATGGGGTTGGGGTGCAGTGATACACTGCCTTCCAGAT  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAGATCTAGAAGATGGGGTTGGGGTGCAGTGATACACTGCCCTCCAGAT  850

seq1  ATGACATGGCCATTGTACTCATGACATACTCTTGCCTACACAAGGCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGGCCATTGTACTCATGACATACTCTTGCCTACACAAGGCCTGT  900

seq1  CAATATTCCAATAGGATGAAACCCTGTATAGGAGTCCAGCAATATGGCTG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAATATTCCAATAGGATGAAACCCTGTATAGGAGTCCAGC-ATATGGCTG  949

seq1  ATCTGGCAAGAGATCACATCTGAAGACATTCTAGATCTA-TGTGATCTGA  999
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCTGGCAAGAGATCACATCTGAAGACATTCTAGATCTATTGTGATCTGA  999

seq1  CTGGGGTGCAGACACACTGGAAGGCAGTTGTGTTTGGAAGTGCCATCTAA  1049
      |||||||||||||||||||||| ||||||||||  |     | ||||| |
seq2  CTGGGGTGCAGACACACTGGAA-GCAGTTGTGTGAG-----GGCATCT-A  1042

seq1  TTGAGGGGC-AGACAAA-GTGGCGAATTAGAGAAAGATTTGACAGGATGA  1097
      ||||||||| | ||||| |||||  |||||||||||| ||| || |||||
seq2  TTGAGGGGCAATACAAAGGTGGC--ATTAGAGAAAGAATTG-CA-GATGA  1088

seq1  GCTAGAGATACCCAACTCTTGGTAGAACAGACA  1130
      ||||||   | || |||||||   |||||||||
seq2  GCTAGA---AACCCACTCTTG--TGAACAGACA  1116