BAC Information

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BAC

Clone NameB6Ng01-115J02
Chromosome13 (Build37)
Map Location 44,430,957 - 44,565,673
singlet/doubletdoublet
Overlap geneEG667157
Upstream geneSirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868
Downstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115J02.bB6Ng01-115J02.g
ACCDH920797DH920798
length1,0451,000
definitionDH920797|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J02, 5' end.DH920798|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,430,957 - 44,431,676)(44,564,672 - 44,565,673)
sequence
gaattcagaaaggagaggggatagacagcattgagaatgcatgtgtgtct
agctctttgcatcataatactgccacagcaggagagtaccccaaggaact
ttccacaaatgattatgatggttttgctctcttccatttgcagttaaaat
tcactccagtttgatatgtggcccttatagaatcctcaaaagatgcccaa
agagacatagagatattggcttgagtctggggtggccatgtaagggacag
ggtgacatggttcccacctctggaacagagccagcaaggcatgagcatcc
atgagtgttgatggttgctgtgggcatgaggcttgtttgtataacaatgt
acatattttcatgttcctcatttgagaaatgtcctctctggcaaggttaa
tgactccataataatcagagacagcacaagtctgggaggcaatggtgtgt
ctaatgtctcaccaaaatggtaaacaccaagacttcaggacaacccttaa
ggctctgaaaacatgagttcaaaagtgtatattttttcaccgatgaacaa
tggaatgaattatatgaggggtttcatgaacctaaaagaacagaggcagc
tgcatgcactatgagccaactcgttaggaagatacaaaggcaggcagatc
tctgagttcaaggtcagtctgggacagaactaggttgggtctaggcttgg
gggaaaatggtaatctcatgatgggatcccacccagctagctcattgtct
gtgcttacaaaggcaggcagatttctacattcattgcaatattttttttt
tttaaattgcttgctatctttttctaagaatcaaagaatcctgggattct
gattcatggggatgatcgatatgtaaataaaacactgggcttttggtcta
caagagatgagctatccaaagtgtttttttggtatttcaagaagaaagct
gtcttgaaagaagagctgtctcgagcagacataggctgtcgtcacctggt
tacccacaaggtgactttgagtcattcttttcactgctcccagaa
gaattcacctctaaccaaaaactgagatgaacatatgtccgataaattca
tagaagcaacagtaacaacgacctaactccctgtttttcacccgacctga
caaatactttttactcttttctcctttctgtatacctggatgtttgtcag
cattagctcaagagctggccccggggccattcctgtggggctgttgctta
gaagagttcagtggccaagttctggtaaaagactggtaaataattctgcc
caggtgtaaggggctttccttggaggtgataggttttggggcccgctttc
ctgggaggtgacaggtcttggggcccagcgtgtcattacttagcctgtag
atctgattttctttgaaaacaaaacaaaacccctcaaaaaccctgtgttt
ggaacttcccgtgctgagcccacgccagtcttgaggtttcctaagacttg
ctgagtaaaaacagtactcactatgagtgtcttcctctgccttcctctcc
gggaagactggggatacagtgaccttgtggtaccgtggtgatgtttctct
gcaccttgattttttttctttccatcagagtccttgtggctcaataggta
tgagaggggtgtgttttatggaagaacatgggtacagcccgactgttttc
cccggtcatctgctatgtatttactaacttcctcaagccaggccagggaa
acacaaactctctaatgcttctcagtggattgtgcaaataaaaacaagcc
ggtcagctctagaagtctccaaagagctttggattcatatccctgagaac
tcagagaccatcccctgccaaaagagagttgtctgacgtggagggaaggg
tgactggatacagctatgccgcagagacacggccttgtgactgccttctt
cagacagccttttgtggctgtgtcttagggcctattcccaacctgctcac
atctctgctttggcctctgatttaagtgcgggtaattagacaaggtaaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_44430957_44431676
seq2: B6Ng01-115J02.b_46_765

seq1  GAATTCAGAAAGGAGAGGGGATAGACAGCATTGAGAATGCATGTGTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGGAGAGGGGATAGACAGCATTGAGAATGCATGTGTGTCT  50

seq1  AGCTCTTTGCATCATAATACTGCCACAGCAGGAGAGTACCCCAAGGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGCATCATAATACTGCCACAGCAGGAGAGTACCCCAAGGAACT  100

seq1  TTCCACAAATGATTATGATGGTTTTGCTCTCTTCCATTTGCAGTTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAATGATTATGATGGTTTTGCTCTCTTCCATTTGCAGTTAAAAT  150

seq1  TCACTCCAGTTTGATATGTGGCCCTTATAGAATCCTCAAAAGATGCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCAGTTTGATATGTGGCCCTTATAGAATCCTCAAAAGATGCCCAA  200

seq1  AGAGACATAGAGATATTGGCTTGAGTCTGGGGTGGCCATGTAAGGGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATAGAGATATTGGCTTGAGTCTGGGGTGGCCATGTAAGGGACAG  250

seq1  GGTGACATGGTTCCCACCTCTGGAACAGAGCCAGCAAGGCATGAGCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATGGTTCCCACCTCTGGAACAGAGCCAGCAAGGCATGAGCATCC  300

seq1  ATGAGTGTTGATGGTTGCTGTGGGCATGAGGCTTGTTTGTATAACAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTTGATGGTTGCTGTGGGCATGAGGCTTGTTTGTATAACAATGT  350

seq1  ACATATTTTCATGTTCCTCATTTGAGAAATGTCCTCTCTGGCAAGGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTCATGTTCCTCATTTGAGAAATGTCCTCTCTGGCAAGGTTAA  400

seq1  TGACTCCATAATAATCAGAGACAGCACAAGTCTGGGAGGCAATGGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCATAATAATCAGAGACAGCACAAGTCTGGGAGGCAATGGTGTGT  450

seq1  CTAATGTCTCACCAAAATGGTAAACACCAAGACTTCAGGACAACCCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTCTCACCAAAATGGTAAACACCAAGACTTCAGGACAACCCTTAA  500

seq1  GGCTCTGAAAACATGAGTTCAAAAGTGTATATTTTTTCACCGATGAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAAAACATGAGTTCAAAAGTGTATATTTTTTCACCGATGAACAA  550

seq1  TGGAATGAATTATATGAGGGGTTTCATGAACCTAAAAGAACAGAGGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAATTATATGAGGGGTTTCATGAACCTAAAAGAACAGAGGCAGC  600

seq1  TGCATGCACTATGAGCCAACTCGTTAGGAAGATACAAAGGCAGGCAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCACTATGAGCCAACTCGTTAGGAAGATACAAAGGCAGGCAGATC  650

seq1  TCTGAGTTCAAGGTCAGTCTGGGACAGAACTAGGTTGGGTCTAGGCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCAAGGTCAGTCTGGGACAGAACTAGGTTGGGTCTAGGCTTGG  700

seq1  GGGAAAATGGTAATCTCATG  720
      ||||||||||||||||||||
seq2  GGGAAAATGGTAATCTCATG  720

seq1: chr13_44564672_44565673
seq2: B6Ng01-115J02.g_68_1067 (reverse)

seq1  TCTTACCCATGTACTAATTA-CCGCACTTAAATCAGAGGGCCAAAGCAGA  49
      ||||| || ||| ||||||| |||||||||||||||| ||||||||||||
seq2  TCTTA-CCTTGT-CTAATTACCCGCACTTAAATCAGA-GGCCAAAGCAGA  47

seq1  GATGGTGAGCAGTTTGTGAAATAGGCCCTAAGACACCAGGCCACAAAAGG  99
      ||| |||||||| ||| | |||||||||||||||||   |||||||||||
seq2  GAT-GTGAGCAGGTTG-GGAATAGGCCCTAAGACAC--AGCCACAAAAGG  93

seq1  CTGTCTGAAGGAGGCAGTCACAAGGCCGTGTCTCTGCGGCATAGCTGTAT  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGAAGAAGGCAGTCACAAGGCCGTGTCTCTGCGGCATAGCTGTAT  143

seq1  CCAGTCACCCTTCCCTCCACGTCAGAC-ACTCTC-TTTGGCAGGGGATGG  197
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  CCAGTCACCCTTCCCTCCACGTCAGACAACTCTCTTTTGGCAGGGGATGG  193

seq1  TCTCTGAGTTCTCAGGGATATGAATCC-AAGCTCTTTGGAGACTTCTAGA  246
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTCTGAGTTCTCAGGGATATGAATCCAAAGCTCTTTGGAGACTTCTAGA  243

seq1  GCTGACCGGCTTGTTTTTATTTGCACAATCCACTGAGAAGCATTAGAGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCGGCTTGTTTTTATTTGCACAATCCACTGAGAAGCATTAGAGAG  293

seq1  TTTGTGTTTCCCTGGCCTGGCTTGAGGAAGTTAGTAAATACATAGCAGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTCCCTGGCCTGGCTTGAGGAAGTTAGTAAATACATAGCAGAT  343

seq1  GACCGGGG-AAACAGTCGGGCTGTACCCATGTTCTTCCATAAAACACACC  395
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGGGAAAACAGTCGGGCTGTACCCATGTTCTTCCATAAAACACACC  393

seq1  CCTCTCATACCTATTGAGCCACAAGGACTCTGATGGAAAGAAAAAAAATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATACCTATTGAGCCACAAGGACTCTGATGGAAAGAAAAAAAATC  443

seq1  AAGGTGCAGAGAAACATCACCACGGTACCACAAGGTCACTGTATCCCCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCAGAGAAACATCACCACGGTACCACAAGGTCACTGTATCCCCAG  493

seq1  TCTTCCCGGAGAGGAAGGCAGAGGAAGACACTCATAGTGAGTACTGTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCGGAGAGGAAGGCAGAGGAAGACACTCATAGTGAGTACTGTTTT  543

seq1  TACTCAGCAAGTCTTAGGAAACCTCAAGACTGGCGTGGGCTCAGCACGGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCAAGTCTTAGGAAACCTCAAGACTGGCGTGGGCTCAGCACGGG  593

seq1  AAGTTCCAAACACAGGGTTTTTGAGGGGTTTTGTTTTGTTTTCAAAGAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCAAACACAGGGTTTTTGAGGGGTTTTGTTTTGTTTTCAAAGAAA  643

seq1  ATCAGATCTACAGGCTAAGTAATGACACGCTGGGCCCCAAGACCTGTCAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCTACAGGCTAAGTAATGACACGCTGGGCCCCAAGACCTGTCAC  693

seq1  CTCCCAGGAAAGCGGGCCCCAAAACCTATCACCTCCAAGGAAAGCCCCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGAAAGCGGGCCCCAAAACCTATCACCTCCAAGGAAAGCCCCTT  743

seq1  ACACCTGGGCAGAATTATTTACCAGTCTTTTACCAGAACTTGGCCACTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGGCAGAATTATTTACCAGTCTTTTACCAGAACTTGGCCACTGA  793

seq1  ACTCTTCTAAGCAACAGCCCCACAGGAATGGCCCCGGGGCCAGCTCTTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTAAGCAACAGCCCCACAGGAATGGCCCCGGGGCCAGCTCTTGA  843

seq1  GCTAATGCTGACAAACATCCAGGTATACAGAAAGGAGAAAAGAGTAAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGCTGACAAACATCCAGGTATACAGAAAGGAGAAAAGAGTAAAAA  893

seq1  GTATTTGTCAGGTCGGGTGAAAAACAGGGAGTTAGGTCGTTGTTACTGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTCAGGTCGGGTGAAAAACAGGGAGTTAGGTCGTTGTTACTGTT  943

seq1  GCTTCTATGAATTTATCGGACATATGTTCATCTCAGTTTTTGGTTAGAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATGAATTTATCGGACATATGTTCATCTCAGTTTTTGGTTAGAGG  993

seq1  TGAATTC  1002
      |||||||
seq2  TGAATTC  1000