BAC Information

Click to search

BAC

Clone NameB6Ng01-115M20
Chromosome13 (Build37)
Map Location 20,603,744 - 20,604,924
singlet/doubletsinglet
Overlap geneElmo1
Upstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115M20.bB6Ng01-115M20.g
ACCDH920972DH920973
length1,1611,224
definitionDH920972|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M20, 5' end.DH920973|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagatgagaagcgctcaaacttgtggagataggaggaccaatag
cagacaagggaataaaggaaatgctttagatgcatgcaaggggtgggttt
ctccttctccaccgtggagagtttagaaagtaaaaatggcctagaaatgc
agacattagcgcaaagtaagtcatttgaatggattacatcattgagacgg
aaggtaaagagaaaagaaggggtcactggactctgcaccttctcttacga
gtcttgcagaattaaatgaactctgaaagacccataggagtgtctctttg
tagggaaaattattagatcctgatggcttcagaaggtggctttctatgaa
gaccacctggttacttgtctttatcatagatacagccttcctttagaaga
catggaaaacactgtctccgaattatcattctaagcttagccaagggtag
ctttgaagattcagccataaggaagtgatagggagaattccacttttgtg
tccttgataccttttgtcttcactgtatagtgggaggctccagtggcccc
atggatgactggtacacttagcctctaaccattaataccactcattctct
cacttactgggagggccctgtagtcctcctggctgcccctggtctccctt
cctggtgatagaaatttccattattgacagggaaactgctggctaatggc
acagacgaattgtaaattttgacaaccccgacaggtaaatattggctttg
cacaaacaagtttctataaataacctgtctgctgaagaaactccacagat
ggcagcagggctgcccaagcattcatttttcccaggatgctcggtgcaag
aaagcacagctgccagctttgctgcacttgctggagccaaggcttcactg
ctgtgctgcagcagactgcccctgctcaagggacatggcagacagaccca
ggacaggcagagatcgatcattctgtaacctcccgccagtgctctccatt
ctcggctcaaggggctttctaaaaatgtcacttcttgtttatagtcaaac
gaggagttgtctgacctggggattatagcctctttaatagtcgacctatt
gaaagaaacgagagggatggacatagtcattgtggactgtgtgcattggc
tgcattgctaa
gaattccttagttgaggtttcctcctctcagatggttctaccttgtgaat
ctccacataaaacaaactgatacaatcgacctgttgtcaaccacacagaa
acacatcactgttaagccatttttcttcaattccaagatcacacattaat
ttcaacactacaatgtaaaacagtacctaagcatatgattgcaagaggaa
aagcagagtccaggaatcaggaattggtagcttttccatgtttcacttga
gtgtgagtttcagaagtttagaactcgagtttcagaagtttagagcataa
tcatcatggcaagtaacatagtgggtggcaggtgggcaggcgggcaggtg
ggcaggcattggagcactagttgagagttacatcccaattagtaggaaga
aagagaaagagcaagagcctaggtctagcatgggctttggaaacttctag
cctgctcccagtggtatacctcctcaaaagtgatcacacttcttaatcct
tctaatcctttcaaatagtaccactctctggttactaaccattcaaacgt
atgaacctatgggggacatccttattcaaaccaccaaaataactaaagca
atcttaagaaaaaaaaaggaatatgctggaggcatcactgcaagcgactt
caatttattttacagggccatagtaataaagacagatttattcatttacc
attatttttcttacaagtgaatacattctcattatatgtctaccacatct
tcattatcctatcagcagctgatgaacatttatttctggctcttttaaat
ccagtttgcaatgaacatggatatatatatatatatgtctctgtaaggag
attataaagtcctttggggtatgtccaggtgtgatgtagatcatatggga
attctagtgtagctttaaaaagaatgctcacactgatttccatagtggat
gaaccagtttacacttccacaacagtgactaaaggtcgtccaaaggatgg
ggacatagagatagcagtaagcacatggcaagataggttcacttgtttgc
aaaagtggaaagactgctagaagagtaatcaacttgcttgtttaacctgg
aattcagatctttccaagatgtcatcacatctggaattaaactgatcaat
gacatgctatgagtcatagattcttagtaggaggtctcgcgtcgctcgtt
atttagcacacatatggacaacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20603744_20604924
seq2: B6Ng01-115M20.b_47_1207

seq1  GAATTCCAGATGAGAAGCGCTCAAACTTGTGGAGATAGGAGGACCAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGAGAAGCGCTCAAACTTGTGGAGATAGGAGGACCAATAG  50

seq1  CAGACAAGGGAATAAAGGAAATGCTTTAGATGCATGCAAGGGGTGGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGGGAATAAAGGAAATGCTTTAGATGCATGCAAGGGGTGGGTTT  100

seq1  CTCCTTCTCCACCGTGGAGAGTTTAGAAAGTAAAAATGGCCTAGAAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTCCACCGTGGAGAGTTTAGAAAGTAAAAATGGCCTAGAAATGC  150

seq1  AGACATTAGCGCAAAGTAAGTCATTTGAATGGATTACATCATTGAGACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTAGCGCAAAGTAAGTCATTTGAATGGATTACATCATTGAGACGG  200

seq1  AAGGTAAAGAGAAAAGAAGGGGTCACTGGACTCTGCACCTTCTCTTACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAGAGAAAAGAAGGGGTCACTGGACTCTGCACCTTCTCTTACGA  250

seq1  GTCTTGCAGAATTAAATGAACTCTGAAAGACCCATAGGAGTGTCTCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCAGAATTAAATGAACTCTGAAAGACCCATAGGAGTGTCTCTTTG  300

seq1  TAGGGAAAATTATTAGATCCTGATGGCTTCAGAAGGTGGCTTTCTATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAATTATTAGATCCTGATGGCTTCAGAAGGTGGCTTTCTATGAA  350

seq1  GACCACCTGGTTACTTGTCTTTATCATAGATACAGCCTTCCTTTAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCTGGTTACTTGTCTTTATCATAGATACAGCCTTCCTTTAGAAGA  400

seq1  CATGGAAAACACTGTCTCCGAATTATCATTCTAAGCTTAGCCAAGGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAACACTGTCTCCGAATTATCATTCTAAGCTTAGCCAAGGGTAG  450

seq1  CTTTGAAGATTCAGCCATAAGGAAGTGATAGGGAGAATTCCACTTTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGATTCAGCCATAAGGAAGTGATAGGGAGAATTCCACTTTTGTG  500

seq1  TCCTTGATACCTTTTGTCTTCACTGTATAGTGGGAGGCTCCAGTGGCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATACCTTTTGTCTTCACTGTATAGTGGGAGGCTCCAGTGGCCCC  550

seq1  ATGGATGACTGGTACACTTAGCCTCTAACCATTAATACCACTCATTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGACTGGTACACTTAGCCTCTAACCATTAATACCACTCATTCTCT  600

seq1  CACTTACTGGGAGGGCCCTGTAGTCCTCCTGGCTGCCCCTGGTCTCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTGGGAGGGCCCTGTAGTCCTCCTGGCTGCCCCTGGTCTCCCTT  650

seq1  CCTGGTGATAGAAATTTCCATTATTGACAGGGAAACTGCTGGCTAATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGATAGAAATTTCCATTATTGACAGGGAAACTGCTGGCTAATGGC  700

seq1  ACAGACGAATTGTAAATTTTGACAACCCCGACAGGTAAATATTGGCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGAATTGTAAATTTTGACAACCCCGACAGGTAAATATTGGCTTTG  750

seq1  CACAAACAAGTTTCTATAAATAACCTGTCTGCTGAAGAAACTCCACAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAAGTTTCTATAAATAACCTGTCTGCTGAAGAAACTCCACAGAT  800

seq1  GGCAGCAGGGCTGCCCAAGCATTCATTTTTCCCAGGATGCTCGGTGCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGGGCTGCCCAAGCATTCATTTTTCCCAGGATGCTCGGTGCAAG  850

seq1  AAAGCACAGCTGCCAGCTTTGCTGCACTTGCTGGAGCCAAGGCTTCACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAGCTGCCAGCTTTGCTGCACTTGCTGGAGCCAAGGCTTCACTG  900

seq1  CTGTGCTGCAGCAGACTGCCCCTGCTCAAGGGACATGGCAGACAGACCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGCAGCAGACTGCCCCTGCTCAAGGGACATGGCAGACAGACCCA  950

seq1  GGACAGGCAGAGATCGATCATTCTGTAACCTCCCGCCAGTGCTCTCCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCAGAGATCGATCATTCTGTAACCTCCCGCCAGTGCTCTCCATT  1000

seq1  CCTCGGCTCCAAGGGGCTTTCTTAAAAATGTCACTTCTTTGGTTTTATAG  1050
       ||||||| |||||||||||| |||||||||||||||||    |||||||
seq2  -CTCGGCT-CAAGGGGCTTTC-TAAAAATGTCACTTCTT---GTTTATAG  1044

seq1  TCAAAGGGAGGAGTTGTCTGACCTGGGGATTTATTAGCCTCTTTTAATTA  1100
      |||||  ||||||||||||||||||||||||   ||||||| ||||||  
seq2  TCAAA-CGAGGAGTTGTCTGACCTGGGGATT--ATAGCCTC-TTTAAT--  1088

seq1  AAGTCGACCCTATTGAAAAGAAAACGAGGAGGGATGAGACATAGTCATTG  1150
       |||||| ||||||||||   |||||| |||||||| |||||||||||||
seq2  -AGTCGA-CCTATTGAAA--GAAACGA-GAGGGATG-GACATAGTCATTG  1132

seq1  TGGACTGTGTGCCATATGGCTGCATTGCTAA  1181
      ||||||||||| ||| |||||||||||||||
seq2  TGGACTGTGTG-CAT-TGGCTGCATTGCTAA  1161