BAC Information

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BAC

Clone NameB6Ng01-116I22
Chromosome13 (Build37)
Map Location 111,765,175 - 111,893,903
singlet/doubletdoublet
Overlap geneLOC668159
Upstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2, LOC100040614
Downstream gene4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116I22.bB6Ng01-116I22.g
ACCDH921525DH921526
length1,0931,134
definitionDH921525|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I22, 5' end.DH921526|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,892,814 - 111,893,903)(111,765,175 - 111,766,313)
sequence
gaattctttatggagagcagatattttctttccagattagctttgtagac
agcattcattagagtctattctgaaaccttggcaaacaagcaagacttgt
ttcctaatcttttcccagttggacacatttattgcccatccttttcatct
tgtggtccaattgtttttcctcacaccaggccttaaggtgataagccttt
ttttttttaaatttacttttattttattttttttttaaagcatggaatta
taccaagtaagttctgaataactattggtatccttttaagttttctgtaa
atcaagactggaattctcaggtactttcccccactataatattttgttcc
aaagtggtgataatgtctaagttcccggtggagtgtgtgtgtgtgtgtta
caatattcatagaatttaagagggtgtattttacaaaaaaacttagaaat
ttcaaatttaggaaattatatatctgacaatgtttaatgttatgacattt
ttaggaaaggaggaattttagttttttaaatgttatttaaatacttcagg
atttatttctgcctgtcaaatttctacttaatacattattctgattttta
tgtattatcaaattagattttgacagatttatgatatcttgtctttggaa
ctacataatttttgaaactcttgagcaaatcactgtccattttgttgcat
caatatcaaatctctacataaaagagaaaattattttttatctcctttgt
tgaaagagtctattatttcttaacatgtattgcaaaatattcatgtattt
tacctaagtaccaactatagttgacagtatgtctagaaattgagatggaa
tgattttaaactataaaggaaacattcttactgcagatgcttaatgaagt
tggggaagaagcaagttaaagaaagaaggtcaaggatgcatgttgatatg
caacaagcccacttcacttcagaatctgtcaatctccaagaataaagtga
actaaaagaaaccaaagaaagttctgaaaaagtggccagtggctgggctc
ttggataccagagcttgaaaattggactgcaaggtggtaagta
gaattctgtaatgaaagctcattgaaaaaagaaaaggacttcatgactag
catacattgatcagaaatctgtaattattattctgaacaaaatggaggtt
ctgttaacaagaaaagagattgaaaatagctgttaaaatgcttaggaagc
aactaggtacatatgggtacagagctttgaataaattaactacttttctt
aaataaatatagagagagactcttgttttctaacagagaataaagattag
gtggcaaatgggtatggtgaaatgtataaaaatcagtgagggagctataa
acttcaaccctgactttcaaaagtgttctctctcccatcaaatgttcaat
atgtccaataaaattgctgattgttatataatactcaagttaatctgtat
ttctgcttggtgttttgtaaattagagctagctggctggtttcagtaaaa
gagaatataataaagatcttctccaataggaaataatttaaatgtttggt
atggataaaagtatatatgggcttacgtgggagaattactaaagaaggta
gattccctaatagctttgaatgctacccacctaacagtagaggttttatt
atttggcaatttatatgcacttctattgtataaaaagtcagtaatgaaga
ggtgttaactcttctagcaccttcttctgcaagatttatagatgaatgtt
aaaactaagctaatgatggagaacattaagtagctaaccttgactttcaa
ccttagaacaagagctgctgtgccccattctgtcttagctgctttttctg
attaaatccccctacacacacacacacacacacacacacacacacacaca
cacacacatatgaaaacggagtgcttcacgggagataaggaaattgttct
tcctataacccaatagttcatactgtacagaattttatatgacccagact
gataaagaaagctatacaaaacaaagtgagtttcagtggttcatcatagt
gttcagtgcaggagtccaaagccactctaggccaggtgatcaggatgaca
gtcatggtccattcctgctagcagtggtgcctttagtcatttggtcctga
atcataagctagcctagtccccctcattggataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111892814_111893903
seq2: B6Ng01-116I22.b_46_1138 (reverse)

seq1  TACTTACCACCTTGCTGTCAATATTTCAAGCTCTGGTTATCCAAGAGCCC  50
      ||||||||||||||| ||| |  ||||||||||||| |||||||||||||
seq2  TACTTACCACCTTGCAGTCCAATTTTCAAGCTCTGG-TATCCAAGAGCCC  49

seq1  -GACACTGGCACCTTTTTTCAGGACTTTCTTCTGGTATCTTTTTGTTCAC  99
       | ||||||| |  |||||||| |||||||| |||| |||||| ||||||
seq2  AGCCACTGGC-CACTTTTTCAGAACTTTCTT-TGGTTTCTTTTAGTTCAC  97

seq1  TTTATTCTTGGAGATTGGCAAGTTCTG-AGTGAGTTGGCCTTGTTGCATA  148
      ||||||||||||||||| ||  ||||| |||||  ||| |||||||||||
seq2  TTTATTCTTGGAGATTGACAGATTCTGAAGTGAAGTGGGCTTGTTGCATA  147

seq1  TC-ACATGCTTCCTTGACC-TCTTTCTTTACTTGGCTTCTTCCCCAACTT  196
      || |||||| ||||||||| ||||||||||  | ||||||||||||||||
seq2  TCAACATGCATCCTTGACCTTCTTTCTTTAACTTGCTTCTTCCCCAACTT  197

seq1  CATTATGCATCTGCAGTAAGAATGTTTCCTTTATAGTTTAAAATCATTCC  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGCATCTGCAGTAAGAATGTTTCCTTTATAGTTTAAAATCATTCC  247

seq1  ATCTCAATTTCTAGACATACTGTC-ACTATAGTTGGTACTTAGGT-AAAT  294
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  ATCTCAATTTCTAGACATACTGTCAACTATAGTTGGTACTTAGGTAAAAT  297

seq1  ACATGGATATTTTGCAATACATGTTAAGAAATAATAGACTCTTTCAACAA  344
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATATTTTGCAATACATGTTAAGAAATAATAGACTCTTTCAACAA  347

seq1  AGGAGATAAAAAATAATTTTCTCTTTTATGTAGAGATTTGATATTGATGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAAAAAATAATTTTCTCTTTTATGTAGAGATTTGATATTGATGC  397

seq1  AACAAAATGGACAGTGATTTGCTCAAGAGTTTCAAAAATTATGTAGTTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGGACAGTGATTTGCTCAAGAGTTTCAAAAATTATGTAGTTCC  447

seq1  AAAGACAAGATATCATAAATCTGTCAAAATCTAATTTGATAATACATAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAGATATCATAAATCTGTCAAAATCTAATTTGATAATACATAAA  497

seq1  AATCAGAATAATGTATTAAGTAGAAATTTGACAGGCAGAAATAAATCCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAATAATGTATTAAGTAGAAATTTGACAGGCAGAAATAAATCCTG  547

seq1  AAGTATTTAAATAACATTTAAAAAACTAAAATTCCTCCTTTCCTAAAAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTAAATAACATTTAAAAAACTAAAATTCCTCCTTTCCTAAAAAT  597

seq1  GTCATAACATTAAACATTGTCAGATATATAATTTCCTAAATTTGAAATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAACATTAAACATTGTCAGATATATAATTTCCTAAATTTGAAATTT  647

seq1  CTAAGTTTTTTTGTAAAATACACCCTCTTAAATTCTATGAATATTGTAAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTTTTTTGTAAAATACACCCTCTTAAATTCTATGAATATTGTAAC  697

seq1  ACACACACACACACTCCACCGGGAACTTAGACATTATCACCACTTTGGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACTCCACCGGGAACTTAGACATTATCACCACTTTGGAA  747

seq1  CAAAATATTATAGTGGGGGAAAGTACCTGAGAATTCCAGTCTTGATTTAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTATAGTGGGGGAAAGTACCTGAGAATTCCAGTCTTGATTTAC  797

seq1  AGAAAACTTAAAAGGATACCAATAGTTATTCAGAACTTACTTGGTATAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTTAAAAGGATACCAATAGTTATTCAGAACTTACTTGGTATAAT  847

seq1  TCCATGCTTTAAAAAAAAAATAAAATAAAAGTAAATTTAAAAAAAAAAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTTTAAAAAAAAAATAAAATAAAAGTAAATTTAAAAAAAAAAAG  897

seq1  GCTTATCACCTTAAGGCCTGGTGTGAGGAAAAACAATTGGACCACAAGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCACCTTAAGGCCTGGTGTGAGGAAAAACAATTGGACCACAAGAT  947

seq1  GAAAAGGATGGGCAATAAATGTGTCCAACTGGGAAAAGATTAGGAAACAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGATGGGCAATAAATGTGTCCAACTGGGAAAAGATTAGGAAACAA  997

seq1  GTCTTGCTTGTTTGCCAAGGTTTCAGAATAGACTCTAATGAATGCTGTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTTGTTTGCCAAGGTTTCAGAATAGACTCTAATGAATGCTGTCT  1047

seq1  ACAAAGCTAATCTGGAAAGAAAATATCTGCTCTCCATAAAGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTAATCTGGAAAGAAAATATCTGCTCTCCATAAAGAATTC  1093

seq1: chr13_111765175_111766313
seq2: B6Ng01-116I22.g_70_1203

seq1  GAATTCTGTAATGAAAGCTCATTGAAAAAAGAAAAGGACTTCATGACTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAATGAAAGCTCATTGAAAAAAGAAAAGGACTTCATGACTAG  50

seq1  CATACATTGATCAGAAATCTGTAATTATTATTCTGAACAAAATGGAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTGATCAGAAATCTGTAATTATTATTCTGAACAAAATGGAGGTT  100

seq1  CTGTTAACAAGAAAAGAGATTGAAAATAGCTGTTAAAATGCTTAGGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACAAGAAAAGAGATTGAAAATAGCTGTTAAAATGCTTAGGAAGC  150

seq1  AACTAGGTACATATGGGTACAGAGCTTTGAATAAATTAACTACTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTACATATGGGTACAGAGCTTTGAATAAATTAACTACTTTTCTT  200

seq1  AAATAAATATAGAGAGAGACTCTTGTTTTCTAACAGAGAATAAAGATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATATAGAGAGAGACTCTTGTTTTCTAACAGAGAATAAAGATTAG  250

seq1  GTGGCAAATGGGTATGGTGAAATGTATAAAAATCAGTGAGGGAGCTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAATGGGTATGGTGAAATGTATAAAAATCAGTGAGGGAGCTATAA  300

seq1  ACTTCAACCCTGACTTTCAAAAGTGTTCTCTCTCCCATCAAATGTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACCCTGACTTTCAAAAGTGTTCTCTCTCCCATCAAATGTTCAAT  350

seq1  ATGTCCAATAAAATTGCTGATTGTTATATAATACTCAAGTTAATCTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAATAAAATTGCTGATTGTTATATAATACTCAAGTTAATCTGTAT  400

seq1  TTCTGCTTGGTGTTTTGTAAATTAGAGCTAGCTGGCTGGTTTCAGTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTGGTGTTTTGTAAATTAGAGCTAGCTGGCTGGTTTCAGTAAAA  450

seq1  GAGAATATAATAAAGATCTTCTCCAATAGGAAATAATTTAAATGTTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATAATAAAGATCTTCTCCAATAGGAAATAATTTAAATGTTTGGT  500

seq1  ATGGATAAAAGTATATATGGGCTTACGTGGGAGAATTACTAAAGAAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAAAAGTATATATGGGCTTACGTGGGAGAATTACTAAAGAAGGTA  550

seq1  GATTCCCTAATAGCTTTGAATGCTACCCACCTAACAGTAGAGGTTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTAATAGCTTTGAATGCTACCCACCTAACAGTAGAGGTTTTATT  600

seq1  ATTTGGCAATTTATATGCACTTCTATTGTATAAAAAGTCAGTAATGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCAATTTATATGCACTTCTATTGTATAAAAAGTCAGTAATGAAGA  650

seq1  GGTGTTAACTCTTCTAGCACCTTCTTCTGCAAGATTTATAGATGAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAACTCTTCTAGCACCTTCTTCTGCAAGATTTATAGATGAATGTT  700

seq1  AAAACTAAGCTAATGATGGAGAACATTAAGTAGCTAACCTTGACTTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAGCTAATGATGGAGAACATTAAGTAGCTAACCTTGACTTTCAA  750

seq1  CCTTAGAACAAGAGCTGCTGTGCCCCATTCTGTCTTAGCTGCTTTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAACAAGAGCTGCTGTGCCCCATTCTGTCTTAGCTGCTTTTTCTG  800

seq1  ATTAAATCCCCCTACACACACACACACACACACACACACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCCCCCTACACACACACACACACACACACACACACACACACACA  850

seq1  CACACACATATGAAAACGGAGTGCTTCACGGGAGATAAGGAAATTGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATATGAAAACGGAGTGCTTCACGGGAGATAAGGAAATTGTTCT  900

seq1  TCCTATAACCCAATAGTTCATACTGTACAAGAATTTTATATGACCCAGAC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCTATAACCCAATAGTTCATACTGTAC-AGAATTTTATATGACCCAGAC  949

seq1  TGATAAAAGAAAGCTATACAAAACAAAGTGAGTTTCAGTGGTCCATCATA  1000
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAT-AAAGAAAGCTATACAAAACAAAGTGAGTTTCAGTGGTTCATCATA  998

seq1  GTGGTACAGTGCAGGAGT-CAAAGCCAACCCTAGGCCAGGTGATCAGGAT  1049
      || || |||||||||||| ||||||| || ||||||||||||||||||||
seq2  GT-GTTCAGTGCAGGAGTCCAAAGCC-ACTCTAGGCCAGGTGATCAGGAT  1046

seq1  GACAGTCATGGTTCCATTTCTGCTAGCAGT-GTGGCTTTAGTCATTT-GT  1097
      ||||||||||| |||||| ||||||||||| ||| |||||||||||| ||
seq2  GACAGTCATGG-TCCATTCCTGCTAGCAGTGGTGCCTTTAGTCATTTGGT  1095

seq1  CCTGAGTTCATAAGGCCTAGCATAGCCCCCCACATTGGATAA  1139
      |||||  |||||||  ||||| ||| ||||| ||||||||||
seq2  CCTGA-ATCATAAG--CTAGCCTAGTCCCCCTCATTGGATAA  1134