BAC Information

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BAC

Clone NameB6Ng01-117J19
Chromosome13 (Build37)
Map Location 62,541,974 - 62,543,127
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986
Downstream gene8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117J19.bB6Ng01-117J19.g
ACCDH922308DH922309
length1,2071,132
definitionDH922308|Mus musculus domesticus DNA, BAC clone: B6Ng01-117J19, 5' end.DH922309|Mus musculus domesticus DNA, BAC clone: B6Ng01-117J19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatatcgagggtctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcgaaacaaccctgagag
tcaatctcacaccagtaagaatggctaagattaaaaattcaggttatagc
agatgctggtgaagatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagcttgtacaaccactctggaagtcagtctatcgtttcctca
ggaaattggacatagtagtaccagaagatccagcaataccactcctgggc
acgtaccaagaagatgttccaattggtaataaggacacaagttccactat
gttcatagcagccttatttataatagccagaagctggaaagaactcagat
gtccctcaacagaggaatggacacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaacaatgaatttatgaaattcttagggaa
atggatgtatctggaggatatcatcctgagtgaggtaacccaataacaaa
agcagtcacttgatatgcattcactgataagtggatatcagcccagaaac
ttagaatacccaagatacaatttgcaaaacacaagaaaatcaagaagaag
gaagacccacgtgtggatacttcattcctacttagaatagggaacaaaat
aactatggaaggagttacagagaccaagtttggagctaagacgaaaggat
ggaccatccagagactaacccaccgggggatccatcccatcatcagccac
cacacccagacactattgcatttgccagcaagatttcgctgaaaggaccc
taatatagctgtcgcatgtgaggctatgccagtgcctggcaaatatagaa
ggaatgctcacagtcatctattggatggaacacaggccctccaatggagg
agctagagaaagtacccaagagctgaggggtctgcaaccctacaggtgga
cacatatgactaacagtaccccagagctctgtctctagctgcatatgtag
cagagatgctagtcagcatcatgggaagagagcctgtctgaaacttatat
gccctagtaggacttagcagagcggatggttggtagggacaggcgggagg
taggtacttggagcttgaattatagaaatctataccaacattggatagaa
cgagaac
gaattcaggttagggggcagtggtcacagctgccatttgcctaaggcact
cagcaatagaagtcaaagcacatcgcaccaaccactaaagcctgctcagc
aatggaggtgaacggaacaatgcatatggaagaaccctcctcctcttctg
actggagggtcttcctggtgtttctcattggccagcgaatcttgagtgac
actagcaccttccttagggttagactgtgctgaaggacacacagcaacat
taggtttcctggcccagctttcttgtgcaggagctgacccattatcacaa
tggcaagttttgcctttcagtatcacttttgcctatctttcaatagccta
cctttctgtcttccaacactaagcaaggtttgggaaatgggacccctgtc
tattgaaacaatatccagtttatgttaactgataggctgtctatctggta
aggtgcatatttaagttgtacttttgtacatgttaagtaaaaatattgca
ttattttctgcttcattttctattctttatccattcccaaatgtgttcca
aaatcttatttgttaaggatgaaaaattcacaaatacatgaagaaaacct
gctgtatgcattcctttgactgtatttgttttttcaggtattgtcagaga
ccatcccgtgagaaagtgagcccttcacaatctccttaacaaatcaaagg
gccttgtaccaagagctggttgccaccccctttcctccttgtcctcttcc
taacacctaaggctgcaaaatttgaataacagtcccctctcccctatctc
ttcctgagttcccaggacatccaagggcgtgagctgtgcctgagcccagc
ttgactcccaaggctgttgaggaggatcaaggttccggagatagatgcaa
agtgcccactgcttggcgcccgacttcgtcctcatgtcagcagatgccca
cttctttgtcttgtataatctcctcgacccctccatatccctgagatgta
tgctttaaggaagcacctcagccttaataacgagacctgatagtaatatc
tactggtcctccgactctctttctttactcccatttcttcaggtttgcgg
tccttctcgaccacgaattactgatccctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62541974_62543127
seq2: B6Ng01-117J19.g_65_1196

seq1  GAATTCAGGTTAGGGGGCAGTGGTCACAGCTGCCATTTGCCTAAGGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTAGGGGGCAGTGGTCACAGCTGCCATTTGCCTAAGGCACT  50

seq1  CAGCAATAGAAGTCAAAGCACATCGCACCAACCACTAAAGCCTGCTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATAGAAGTCAAAGCACATCGCACCAACCACTAAAGCCTGCTCAGC  100

seq1  AATGGAGGTGAACGGAACAATGCATATGGAAGAACCCTCCTCCTCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGTGAACGGAACAATGCATATGGAAGAACCCTCCTCCTCTTCTG  150

seq1  ACTGGAGGGTCTTCCTGGTGTTTCTCATTGGCCAGCGAATCTTGAGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGGGTCTTCCTGGTGTTTCTCATTGGCCAGCGAATCTTGAGTGAC  200

seq1  ACTAGCACCTTCCTTAGGGTTAGACTGTGCTGAAGGACACACAGCAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCACCTTCCTTAGGGTTAGACTGTGCTGAAGGACACACAGCAACAT  250

seq1  TAGGTTTCCTGGCCCAGCTTTCTTGTGCAGGAGCTGACCCATTATCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCCTGGCCCAGCTTTCTTGTGCAGGAGCTGACCCATTATCACAA  300

seq1  TGGCAAGTTTTGCCTTTCAGTATCACTTTTGCCTATCTTTCAATAGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTTTTGCCTTTCAGTATCACTTTTGCCTATCTTTCAATAGCCTA  350

seq1  CCTTTCTGTCTTCCAACACTAAGCAAGGTTTGGGAAATGGGACCCCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGTCTTCCAACACTAAGCAAGGTTTGGGAAATGGGACCCCTGTC  400

seq1  TATTGAAACAATATCCAGTTTATGTTAACTGATAGGCTGTCTATCTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAACAATATCCAGTTTATGTTAACTGATAGGCTGTCTATCTGGTA  450

seq1  AGGTGCATATTTAAGTTGTACTTTTGTACATGTTAAGTAAAAATATTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATATTTAAGTTGTACTTTTGTACATGTTAAGTAAAAATATTGCA  500

seq1  TTATTTTCTGCTTCATTTTCTATTCTTTATCCATTCCCAAATGTGTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTGCTTCATTTTCTATTCTTTATCCATTCCCAAATGTGTTCCA  550

seq1  AAATCTTATTTGTTAAGGATGAAAAATTCACAAATACATGAAGAAAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTATTTGTTAAGGATGAAAAATTCACAAATACATGAAGAAAACCT  600

seq1  GCTGTATGCATTCCTTTGACTGTATTTGTTTTTTCAGGTATTGTCAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATGCATTCCTTTGACTGTATTTGTTTTTTCAGGTATTGTCAGAGA  650

seq1  CCATCCCGTGAGAAAGTGAGCCCTTCACAATCTCCTTAACAAATCAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCGTGAGAAAGTGAGCCCTTCACAATCTCCTTAACAAATCAAAGG  700

seq1  GCCTTGTACCAAGAGCTGGTTGCCACCCCCTTTCCTCCTTGTCCTCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTACCAAGAGCTGGTTGCCACCCCCTTTCCTCCTTGTCCTCTTCC  750

seq1  TAACACCTAAGGCTGCAAAATTTGAATAACAGTCCCCTCTCCCCTATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCTAAGGCTGCAAAATTTGAATAACAGTCCCCTCTCCCCTATCTC  800

seq1  TTCCTGAGTTCCCAGGACATCCAAGGGCGTGAGCTGTGCCTGAGCCCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGTTCCCAGGACATCCAAGGGCGTGAGCTGTGCCTGAGCCCAGC  850

seq1  TTGACTCCCAAGGCTGTTGAGGAGGATCAAGGTTCCGGAGATAAGATGCA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGACTCCCAAGGCTGTTGAGGAGGATCAAGGTTCCGGAGAT-AGATGCA  899

seq1  AAGTGCCCACTGCTTGGCGCCCGACTTCGGCCCTCATGTCAGCAGATGCC  950
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  AAGTGCCCACTGCTTGGCGCCCGACTTC-GTCCTCATGTCAGCAGATGCC  948

seq1  CACTTCTTTGTTCTTTGTATAATTCTCCCTCGACCCCTCCCATATTCCCT  1000
      |||||||||||   |||||||| ||| ||||||||||| ||||| |||||
seq2  CACTTCTTTGT--CTTGTATAA-TCT-CCTCGACCCCT-CCATA-TCCCT  992

seq1  GAGATGTATGCTTTAAAAGGAAGGCACCTCAGCCTAATAAACGAGACCTT  1050
      ||||||||||||||  |||||| |||||||||||| |  ||||||||| |
seq2  GAGATGTATGCTTT--AAGGAA-GCACCTCAGCCTTAATAACGAGACC-T  1038

seq1  GATAGGTTAATATCTACTTGGTCCTCCGACTCTCTTTCTTTTACTCCCAT  1100
      |||||  |||||||||| |||||||||||||||||||| |||||||||||
seq2  GATAG--TAATATCTAC-TGGTCCTCCGACTCTCTTTC-TTTACTCCCAT  1084

seq1  TTCCTTCCAGGTTTGCGGTCCCTCTCGCACCCACGAATAACTGAATCCCG  1150
      |||  | |||||||||||||| |||||   |||||||| |||| ||||| 
seq2  TTC--TTCAGGTTTGCGGTCCTTCTCG--ACCACGAATTACTG-ATCCC-  1128

seq1  TGGG  1154
      ||||
seq2  TGGG  1132