BAC Information

Click to search

BAC

Clone NameB6Ng01-117M05
Chromosome13 (Build37)Y (Build37)
Map Location 78,829,611 - 78,830,7251,870,346 - 1,870,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneEG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117M05.bB6Ng01-117M05.g
ACCDH922419DH922420
length1,107459
definitionDH922419|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M05, 5' end.DH922420|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,829,611 - 78,830,725)(1,870,346 - 1,870,575)
sequence
gaattccatatatatggaataaaacacatataagtatcatatataatatc
aatgaatatcaatatctgtctatctgtctatctgtctatctatctatcta
tctatctatctatcatgtcttcacactctatggagaaaaccacagcatag
gaaagaatatatctgtaatagggtttcttatagagattttgttacaaaga
caggaaggataaaaaaagaaaagaaaaattcaagatttagactatgtttt
atttagatggaaaatgcaataaaaaacttggcattattggagaggaagag
ttgatggcatttgggtggagacttcaaacagaaggattgtgccatgccac
tagaaagtatctgagtctgaggtggcagcacagtgaagctttacagaatg
gaatactcagggagaaggcatggcagtgtggttagaattgagacagtgag
gaaaataccactaagagtcacatcaagaaggtggatggacctgtaggtta
actttacagagtgaggtaggcagccactggtaatgtagataacttctgtc
aaatgatgagcacttggctaagaatgagagctgaggaactgagagatcaa
ttacctgttgcactttccaagttcatcagatggaagtttgctgataggtc
acttgtgagaagccaaaatgggagaaaagatggtcctgaggtctttgtgt
aagccattctcaggaatggtgcaaacaatggaaggttctgtgtaatttga
tgggcagctgatgggatatgagggttggattaaaaaacacatacagcata
cgaggcacaccttaagtgtgtctctgaggatgttgtcacatgagttttgt
tactttcctgttattaaaaatgtatttttcagatcttaggcgcgaaccca
ccagagggtcccaaggtcccagtgccgcagacgctcttggtccctgtgtc
tgcgtggaacgggtcttctcgatgcggtggcaaagtgtggatgaatgaca
aacagacactcacaggagagtcgtgtgaatctgaagtgtaattttcgatc
aagcatcaaactttttatgcaaaggacaataggagttgggtgacaaatcg
ccaaggt
caatactcaatctacagtttgtctgtgggtgtctgcatatgtctgagtca
gctgctgagtggaggctctaagggaacagcaatgcaagactctgcataca
ccagcaagcgttggctgaaaggaccctgatatagctgtctcttgtgagac
taggccggggcctagcaaacacataagtggatgctcacagtcacctattg
gatggagcacagggcccccaatggaggagctagagaaagtatccaaggag
ctaaagagatctgcaaccctgtaggtgcaacaacattatgaactaaccag
taccccggagctcttgactctagctgcatatgtatcaaaagatggcctag
tcggccatcagtggaaagagaggcccattggacttgcaaactttatatgc
cccagtacaggggaatgccagggccaaaaaatgggaatgggtgggtaggg
aagtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_78829611_78830725
seq2: B6Ng01-117M05.b_49_1155

seq1  GAATTCCATATATATGGAATAAAACACATATATGTATCATATATAATATC  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCCATATATATGGAATAAAACACATATAAGTATCATATATAATATC  50

seq1  AATGAATATCAATATCTGTCTATCTGTCTATCTGTCTATCTATCTATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATCAATATCTGTCTATCTGTCTATCTGTCTATCTATCTATCTA  100

seq1  TCTATCTATCTATCATGTCTTCACACTCTATGGAGAAAACCACAGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCATGTCTTCACACTCTATGGAGAAAACCACAGCATAG  150

seq1  GAAAGAATATATCTGTAATAGGGTTTCTTATAGAGATTTTGTTACAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATATATCTGTAATAGGGTTTCTTATAGAGATTTTGTTACAAAGA  200

seq1  CAGGAAGGATAAAAAAAGAAAAGAAAAATTCAAGATTTAGACTATGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGATAAAAAAAGAAAAGAAAAATTCAAGATTTAGACTATGTTTT  250

seq1  ATTTAGATGGAAAATGCAATAAAAAACTTGGCATTATTGGAGAGGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGATGGAAAATGCAATAAAAAACTTGGCATTATTGGAGAGGAAGAG  300

seq1  TTGATGGCATTTGGGTGGAGACTTCAAACAGAAGGATTGTGCCATGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGCATTTGGGTGGAGACTTCAAACAGAAGGATTGTGCCATGCCAC  350

seq1  TAGAAAGTATCTGAGTCTGAGGTGGCAGCACAGTGAAGCTTTACAGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTATCTGAGTCTGAGGTGGCAGCACAGTGAAGCTTTACAGAATG  400

seq1  GAATACTCAGGGAGAAGGCATGGCAGTGTGGTTAGAATTGAGACAGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTCAGGGAGAAGGCATGGCAGTGTGGTTAGAATTGAGACAGTGAG  450

seq1  GAAAATACCACTAAGAGTCACATCAAGAAGGTGGATGGACCTGTAGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACCACTAAGAGTCACATCAAGAAGGTGGATGGACCTGTAGGTTA  500

seq1  ACTTTACAGAGTGAGGTAGGCAGCCACTGGTAATGTAGATAACTTCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAGAGTGAGGTAGGCAGCCACTGGTAATGTAGATAACTTCTGTC  550

seq1  AAATGATGAGCACTTGGCTAAGAATGAGAGCTGAGGAACTGAGAGATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGAGCACTTGGCTAAGAATGAGAGCTGAGGAACTGAGAGATCAA  600

seq1  TTACCTGTTGCACTTTCCAAGTTCATCAGATGGAAGTTTGCTGATAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTTGCACTTTCCAAGTTCATCAGATGGAAGTTTGCTGATAGGTC  650

seq1  ACTTGTGAGAAGCCAAAATGGGAGAAAAGATGGTCCTGAGGTCTTTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGAGAAGCCAAAATGGGAGAAAAGATGGTCCTGAGGTCTTTGTGT  700

seq1  AAGCCATTCTCAGGAATGGTGCAAACAATGGAAGGTTCTGTGTAATTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTCTCAGGAATGGTGCAAACAATGGAAGGTTCTGTGTAATTTGA  750

seq1  TGGGCAGCTGATGGGATATGAGGGTTGGATTAAAAAACACATACAGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCTGATGGGATATGAGGGTTGGATTAAAAAACACATACAGCATA  800

seq1  CGAGGCACACCTTAAGGTGTGTCTCTGAGGATGTTGTCACATGAGTTTTG  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CGAGGCACACCTTAA-GTGTGTCTCTGAGGATGTTGTCACATGAGTTTTG  849

seq1  TTACTTTCCTGTTATTAAAAAATGTATTTTTCAGATCTTAGGCGCGAACC  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTACTTTCCTGTTATT-AAAAATGTATTTTTCAGATCTTAGGCGCGAACC  898

seq1  CACCAGAGGGTCCCAAGGTCCCCAGTGCCGCAGACGCTCTTGGTCCCTGT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACCAGAGGGTCCCAAGGT-CCCAGTGCCGCAGACGCTCTTGGTCCCTGT  947

seq1  GTCTGCGTGGAACGGGTC-TCTCGATGCGGGTGGGCAAAGTGTGGATGAA  999
      |||||||||||||||||| |||||||||||   |||||||||||||||||
seq2  GTCTGCGTGGAACGGGTCTTCTCGATGCGG--TGGCAAAGTGTGGATGAA  995

seq1  TGACAAACAGACACACACAGGAGAGGTCGTGTGGAATCTG-AGTGTAATT  1048
      |||||||||||||| ||||||||| ||||||| ||||||| |||||||||
seq2  TGACAAACAGACACTCACAGGAGA-GTCGTGT-GAATCTGAAGTGTAATT  1043

seq1  TTCGAATCAAGCATCAGACTTTTTATGCAGAGGACAATAAGGAAGTTGGG  1098
      |||| ||||||||||| |||||||||||| |||||||||  | |||||||
seq2  TTCG-ATCAAGCATCAAACTTTTTATGCAAAGGACAATA--GGAGTTGGG  1090

seq1  TGACAAATTCGCAAGGT  1115
      ||||||||   ||||||
seq2  TGACAAATCGCCAAGGT  1107

seq1: chrY_1870346_1870575
seq2: B6Ng01-117M05.g_301_530

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||| ||||||||||||| |||||| |
seq2  CTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGGGG  230
      |  || | ||||||||||||| ||||||||
seq2  AATGGGAATGGGTGGGTAGGGAAGTGGGGG  230