BAC Information

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BAC

Clone NameB6Ng01-119I21
Chromosome13 (Build37)
Map Location 72,270,285 - 72,271,207
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627230, LOC100042360, Irx1
Downstream geneLOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119I21.bB6Ng01-119I21.g
ACCDH923738DH923739
length1,234914
definitionDH923738|Mus musculus domesticus DNA, BAC clone: B6Ng01-119I21, 5' end.DH923739|Mus musculus domesticus DNA, BAC clone: B6Ng01-119I21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaagtgaatgccctttataacctccacccacatcccattggtc
ccaagcaagtatattctccaagttgcagttcctgattggctgtcactgtc
atagcaatctctaggctctcgggaaggcttcagtttggctcccatgcagc
ggttccctccacagctgttcttcttacagggagcgtcatagttttatatt
caggtgcaaggagataggaaatttactgcagggtataagaactgggtaca
gctatggaagcttgtcctaagtttgagagacttatagctgaataagatgt
aaattattcctgcaaaattagtgagaaaaccaaaagcaagatagggggac
agttatttggcttttacttccacatcattttttgtcattgaagaaagtta
gaacaagaacttaaataggacaagaatcttgaggcatgagcttatgcaga
ggccgtggaggggtgcttcttattagctcaggccctgtggcttgctcagc
ctgctttcttatagaaccaagtccacggatggcaccacccaccacggact
gggccaacttacaccaatcactaattaagaaaatgccctatgggcttgcc
ctatgttatagaggcattttctcaattgaagttccctcttctcaaatgat
tacttgtgtcaggttaacataaaactagccatcagaaccccacaacagcc
agatctataactgtaaagtcaacagctgaagagcttacactcagaaggca
ctctgcctaagtgaaaaaatacagtcccagaatgcacaagttaactgatt
taaaaatccagtgctaaaggttcattttctttctagaaatagatgtttgt
ccaaggaagttcccaagacttctgcatgagataggcaattgcaattaatg
ttggttacccacctgaactgaataggaaatgcttattattaaaaataccg
tgtatttgctattgatacagagacagacagattgatcaatgaaattgaat
taaagatccagaaataaacacactaaacacacatacctacatacacttca
tttgaaaaggaagccaaaccatatatgaaattgatgctggtctaactgat
tgatgttcttacatgtagaagaatgcaatagaatccatatttataccctg
ccaaaaactcaagtcttaatgatacgaacctcacgaaaagcctaatacta
aaattatagaagagagaagtgaaaaaatatggtc
gaattccaatgcctcatctttcccacatcatcacagtagagtcctgaatc
tgatgacatgacaggtttaaggccctctgctgatggctgagcttggaaac
tccaggagagcctatagcaagtctgtggtagccatcttgagccttccctg
aacccacagattccatgtgccagggcaataaggaaacaggggcagcttgc
ttcaacaagcaagccttcatcaccctcagccccagaaaatcccatgacta
acttgcacacattggctctaaggttgggaggcagacactccatgctttgg
tactggctccatggtggcagaggtccttcttggctgaagtttaggaacaa
gggtaaaaatctgagagcaaggaggcctgaaggggaggaagaggagggac
atgtcacagatgaagcatagcagcccgtgtgtggaggctggaggaggagg
agcagaatgggaaaagcaagacatggaacatgcttccaggctggctgtgg
ccactgctcttggtgaagccgagaacactggagtcggcagtgtgctttca
gggctgtaactccagtcccatggaccaactttgggggtgcttcctgaatt
cactagaagtgtccctcagtttgggctacgagggaagaaatgtgtgaggc
actaaacagggtcttccctcccagtaattgcacaggcaattactcttgga
aagcgaaaagccaaggagtcaggtggaaaggacgggagtgcggttccata
gatgcttcataggttgttcaggagcccctgagcagcctgttattatagaa
tcaattatatccaatttgggcttagtacgtgatgctatttctacttacaa
gggctcagatctcgtagaatgaaagagatctttgggatgaatccctctca
gttgtcatttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_72270285_72271207
seq2: B6Ng01-119I21.g_67_980

seq1  GAATTCCAATGCCTCATCTTTCCCACATCATCACAGTAGAGTCCTGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGCCTCATCTTTCCCACATCATCACAGTAGAGTCCTGAATC  50

seq1  TGATGACATGACAGGTTTAAGGCCCTCTGCTGATGGCTGAGCTTGGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACATGACAGGTTTAAGGCCCTCTGCTGATGGCTGAGCTTGGAAAC  100

seq1  TCCAGGAGAGCCTATAGCAAGTCTGTGGTAGCCATCTTGAGCCTTCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGAGCCTATAGCAAGTCTGTGGTAGCCATCTTGAGCCTTCCCTG  150

seq1  AACCCACAGATTCCATGTGCCAGGGCAATAAGGAAACAGGGGCAGCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACAGATTCCATGTGCCAGGGCAATAAGGAAACAGGGGCAGCTTGC  200

seq1  TTCAACAAGCAAGCCTTCATCACCCTCAGCCCCAGAAAATCCCATGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAGCAAGCCTTCATCACCCTCAGCCCCAGAAAATCCCATGACTA  250

seq1  ACTTGCACACATTGGCTCTAAGGTTGGGAGGCAGACACTCCATGCTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCACACATTGGCTCTAAGGTTGGGAGGCAGACACTCCATGCTTTGG  300

seq1  TACTGGCTCCATGGTGGCAGAGGTCCTTCTTGGCTGAAGTTTAGGAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTCCATGGTGGCAGAGGTCCTTCTTGGCTGAAGTTTAGGAACAA  350

seq1  GGGTAAAAATCTGAGAGCAAGGAGGCCTGAAGGGGAGGAAGAGGAGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAAATCTGAGAGCAAGGAGGCCTGAAGGGGAGGAAGAGGAGGGAC  400

seq1  ATGTCACAGATGAAGCATAGCAGCCCGTGTGTGGAGGCTGGAGGAGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAGATGAAGCATAGCAGCCCGTGTGTGGAGGCTGGAGGAGGAGG  450

seq1  AGCAGAATGGGAAAAGCAAGACATGGAACATGCTTCCAGGCTGGCTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATGGGAAAAGCAAGACATGGAACATGCTTCCAGGCTGGCTGTGG  500

seq1  CCACTGCTCTTGGTGAAGCCGAGAACACTGGAGTCGGCAGTGTGCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTCTTGGTGAAGCCGAGAACACTGGAGTCGGCAGTGTGCTTTCA  550

seq1  GGGCTGTAACTCCAGTCCCATGGACCAACTTTGGGGGTGCTTCCTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTAACTCCAGTCCCATGGACCAACTTTGGGGGTGCTTCCTGAATT  600

seq1  CACTAGAAGTGTCCCTCAGTTTGGGCTACGAGGGAAGAAATGTGTGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAAGTGTCCCTCAGTTTGGGCTACGAGGGAAGAAATGTGTGAGGC  650

seq1  ACTAAACAGGGTCTTCCCTCCCAGTAATTGCACAGGCAATTACTCTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAGGGTCTTCCCTCCCAGTAATTGCACAGGCAATTACTCTTGGA  700

seq1  AAGCGAAAAGCCAAGGAGTCAGGTGGAAAGGACGGGAGTGCGGTTCCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAAAAGCCAAGGAGTCAGGTGGAAAGGACGGGAGTGCGGTTCCATA  750

seq1  GATGCTTCATAGGTTGTTCAGGGAGCCCCTGAGCAGCCTGTTAATTATAG  800
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  GATGCTTCATAGGTTGTTCA-GGAGCCCCTGAGCAGCCTGTT-ATTATAG  798

seq1  AATCAATTATATCCAATTTTGGCTTAGTACAGTGATGCTATTTCTTACTT  850
      ||||||||||||||||||| |||||||||| ||||||||||||| |||||
seq2  AATCAATTATATCCAATTTGGGCTTAGTAC-GTGATGCTATTTC-TACTT  846

seq1  ACAAAGGGCTCAGATTCTCGTAGGAATGAAAGAGATCTTTGGGATGAATC  900
      || ||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  AC-AAGGGCTCAGA-TCTCGTA-GAATGAAAGAGATCTTTGGGATGAATC  893

seq1  CCTCTCAGTTTGTCCATTTCTGA  923
      |||||||| |||| |||||||||
seq2  CCTCTCAG-TTGT-CATTTCTGA  914