BAC Information

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BAC

Clone NameB6Ng01-120A06
Chromosome13 (Build37)
Map Location 77,623,432 - 77,748,347
singlet/doubletdoublet
Overlap geneLOC675063
Upstream geneMctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
Downstream geneD13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120A06.bB6Ng01-120A06.g
ACCDH924076DH924077
length9311,135
definitionDH924076|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A06, 5' end.DH924077|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,623,432 - 77,624,363)(77,747,203 - 77,748,347)
sequence
gaattcttatgaatttttttctcgtttattggatggtatcccaaggcacg
tgtcaacatgatccaattcatattcagccaattagagaacccaaagaaaa
ggagcttgtcataatcacctgagaggtactgatactctgggacaaaaggt
acattattactacacaaaatatggaggaatttattgcagtggaagccaca
acttaaactagacagtacacaacggagaggctccagtgcaccaccatttt
gaaaacaattatgctttgccttctgccagaaagagggaaaatagctctgt
gttagaactacattttactctctcatcaaaactataaaatgcctctgaag
actgttccagatctgcttttttgacagataggagtaaaagtcattgttga
actgaaattctattattgtcctattattcccatgctttctctaaagatta
ggtttccagaagagagggctgatatgaatgccttttgtagaatgcaggtc
acatttaacccatttaagcccaaggaggttggaaacttactgatccagaa
cttgtgaacagccttggattccttctgcctctcagaaaccagtgatgaat
ttcagcttcacactcaaaaggagaaagaagtacctcctctctctcatggg
aaaagccatcactttactcatgtatcagtcatcaaatctgcagtctcctt
agtgtttttattctgttcagaaaagtaatttaccctctgtgtactaatcc
tgacttaacaagactttggaaagctaacaacagacttatcaaagaacagc
ctagaatttggccatctcagactgtcaagactgaacatggcagttggtgc
ctataataccagcactaagaaagttgaattcaagccagtctgggatgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcaatccttagaacacacatggaagaatgagtgaactgactcctac
atgttattctctaacctacacacatatcatgtgacaccacacacacacac
acacacacacacacacacacacacatccaataagaacacacctgggtata
gcccaatcattgaccacttgcctagcatatgcaagaactagggtttcatt
ccaagttcaaacaagaaaaagcttaaatattttataaatttagatattaa
atagaagaactaagcatcatctatatttatgtgcaatgcaaacatgtcta
ttctcctccagtcttccagtatataaaagtgttaatactgcctaagaaga
cgaattattttaagaatgtcaacagatcaaaatatgtattccacacataa
atattttgatcattgtctctacttgtgaagattaaaagcagtttcttttc
ttcattaaaaatctgtataattaatgtaatttaaatgaattatatatgta
acagaatccatgataaggatccttaagcttcatgacaattatagcacttc
acagtataattgagctgttggtaattaatgacattagacaaaattattta
cctaccacagccgtcttatctctgctttggtttataaaggagaaataatt
ttatataaggataataaataataacaaatgataaaaggtaataggttata
ttttctaattattttattcttgttaaataaaagcactagatatttgaaat
ctctgtcacaagctacatttcacactcataaactgctaagaaaggtttgt
ctctaactgctaatacagtgaaaaaggaaatcattttctcaaaagaatta
ccatgagagaaactaatctaccaatttttcaaataccaatgcacaatatg
ttcaaaatctttatctgtagtttctcccaatatagtaaatatctgggata
gaaacattttccacagaagtcagagtatcagagtcatgtatctacaactc
actgaaaagcttcaaactaaatatatgttgactctatttttgttcatctg
actggtaggctgcctcttgtaataaatcccctacttcacataagggttat
gaaattcaacattgccctaattgctaatgtctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_77623432_77624363
seq2: B6Ng01-120A06.b_49_979

seq1  GAATTCTTATGAATTTTTTTCTCGTTTATTGGATGGTATCCCAAGGCACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGAATTTTTTTCTCGTTTATTGGATGGTATCCCAAGGCACG  50

seq1  TGTCAACATGATCCAATTCATATTCAGCCAATTAGAGAACCCAAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACATGATCCAATTCATATTCAGCCAATTAGAGAACCCAAAGAAAA  100

seq1  GGAGCTTGTCATAATCACCTGAGAGGTACTGATACTCTGGGACAAAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGTCATAATCACCTGAGAGGTACTGATACTCTGGGACAAAAGGT  150

seq1  ACATTATTACTACACAAAATATGGAGGAATTTATTGCAGTGGAAGCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTACTACACAAAATATGGAGGAATTTATTGCAGTGGAAGCCACA  200

seq1  ACTTAAACTAGACAGTACACAACGGAGAGGCTCCAGTGCACCACCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACTAGACAGTACACAACGGAGAGGCTCCAGTGCACCACCATTTT  250

seq1  GAAAACAATTATGCTTTGCCTTCTGCCAGAAAGAGGGAAAATAGCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAATTATGCTTTGCCTTCTGCCAGAAAGAGGGAAAATAGCTCTGT  300

seq1  GTTAGAACTACATTTTACTCTCTCATCAAAACTATAAAATGCCTCTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAACTACATTTTACTCTCTCATCAAAACTATAAAATGCCTCTGAAG  350

seq1  ACTGTTCCAGATCTGCTTTTTTGACAGATAGGAGTAAAAGTCATTGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCCAGATCTGCTTTTTTGACAGATAGGAGTAAAAGTCATTGTTGA  400

seq1  ACTGAAATTCTATTATTGTCCTATTATTCCCATGCTTTCTCTAAAGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATTCTATTATTGTCCTATTATTCCCATGCTTTCTCTAAAGATTA  450

seq1  GGTTTCCAGAAGAGAGGGCTGATATGAATGCCTTTTGTAGAATGCAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCAGAAGAGAGGGCTGATATGAATGCCTTTTGTAGAATGCAGGTC  500

seq1  ACATTTAACCCATTTAAGCCCAAGGAGGTTGGAAACTTACTGATCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAACCCATTTAAGCCCAAGGAGGTTGGAAACTTACTGATCCAGAA  550

seq1  CTTGTGAACAGCCTTGGATTCCTTCTGCCTCTCAGAAACCAGTGATGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAACAGCCTTGGATTCCTTCTGCCTCTCAGAAACCAGTGATGAAT  600

seq1  TTCAGCTTCACACTCAAAAGGAGAAAGAAGTACCTCCTCTCTCTCATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTCACACTCAAAAGGAGAAAGAAGTACCTCCTCTCTCTCATGGG  650

seq1  AAAAGCCATCACTTTACTCATGTATCAGTCATCAAATCTGCAGTCTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATCACTTTACTCATGTATCAGTCATCAAATCTGCAGTCTCCTT  700

seq1  AGTGTTTTTATTCTGTTCAGAAAAGTAATTTACCCTCTGTGTACTAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTTATTCTGTTCAGAAAAGTAATTTACCCTCTGTGTACTAATCC  750

seq1  TGACTTAACAAGACTTTGGAAAGCTAACAACAGACTTATCAAAGAACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAACAAGACTTTGGAAAGCTAACAACAGACTTATCAAAGAACAGC  800

seq1  CTAGAATTTGGCCATCTCAGACTGTCAAGACTGAACATGGCAGTTGGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTTGGCCATCTCAGACTGTCAAGACTGAACATGGCAGTTGGTGC  850

seq1  CTATAATACCAGCACTAAGAAGGTTGAATTCAAGGCCAGTCTGGGATGTG  900
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  CTATAATACCAGCACTAAGAAAGTTGAATTCAA-GCCAGTCTGGGATGTG  899

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  932
      ||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  931

seq1: chr13_77747203_77748347
seq2: B6Ng01-120A06.g_67_1201 (reverse)

seq1  ATGAGACA-TAGCAAATAGGGGGCAATGTTGAATTTCATAAACCATAGTG  49
      |||||||| |||||| ||  ||||||||||||||||||||| || || ||
seq2  ATGAGACATTAGCAATTA--GGGCAATGTTGAATTTCATAACCCTTA-TG  47

seq1  GGAAGGTAGGGGATTTAGTACAAGAGGCAGGCTACCAAGTCAGGATGAAC  99
       ||| |||||||||||| |||||||||||| ||||| ||||| |||||||
seq2  TGAA-GTAGGGGATTTATTACAAGAGGCAGCCTACC-AGTCA-GATGAAC  94

seq1  AAAAAATAGAGTCAACATATATTTAGTATGAAGCTTTTCAGTGAGTTGTA  149
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -AAAAATAGAGTCAACATATATTTAGTTTGAAGCTTTTCAGTGAGTTGTA  143

seq1  GAATACATGACTCTGATAACTTCTGACTTCTGTTGGAAAATGTTTCTATC  199
      | ||||||||||||||||   ||||||||||| |||||||||||||||||
seq2  G-ATACATGACTCTGATA--CTCTGACTTCTG-TGGAAAATGTTTCTATC  189

seq1  CCAGATATTTACTATATTGGGAGAAACTACAGATAAAGATTTTGAACATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATATTTACTATATTGGGAGAAACTACAGATAAAGATTTTGAACATA  239

seq1  TTGTGCATTGGTATTTGAAAAATTGGTAGATTAGTTTCTCTCATGGTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATTGGTATTTGAAAAATTGGTAGATTAGTTTCTCTCATGGTAAT  289

seq1  TCTTTTGAGAAAATGATTTCCTTTTTCACTGTATTAGCAGTTAGAGACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAGAAAATGATTTCCTTTTTCACTGTATTAGCAGTTAGAGACAA  339

seq1  ACCTTTCTTAGCAGTTTATGAGTGTGAAATGTAGCTTGTGACAGAGATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTAGCAGTTTATGAGTGTGAAATGTAGCTTGTGACAGAGATTT  389

seq1  CAAATATCTAGTGCTTTTATTTAACAAGAATAAAATAATTAGAAAATATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCTAGTGCTTTTATTTAACAAGAATAAAATAATTAGAAAATATA  439

seq1  ACCTATTACCTTTTATCATTTGTTATTATTTATTATCCTTATATAAAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTACCTTTTATCATTTGTTATTATTTATTATCCTTATATAAAATT  489

seq1  ATTTCTCCTTTATAAACCAAAGCAGAGATAAGACGGCTGTGGTAGGTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCTTTATAAACCAAAGCAGAGATAAGACGGCTGTGGTAGGTAAA  539

seq1  TAATTTTGTCTAATGTCATTAATTACCAACAGCTCAATTATACTGTGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGTCTAATGTCATTAATTACCAACAGCTCAATTATACTGTGAAG  589

seq1  TGCTATAATTGTCATGAAGCTTAAGGATCCTTATCATGGATTCTGTTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAATTGTCATGAAGCTTAAGGATCCTTATCATGGATTCTGTTACA  639

seq1  TATATAATTCATTTAAATTACATTAATTATACAGATTTTTAATGAAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTCATTTAAATTACATTAATTATACAGATTTTTAATGAAGAAA  689

seq1  AGAAACTGCTTTTAATCTTCACAAGTAGAGACAATGATCAAAATATTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGCTTTTAATCTTCACAAGTAGAGACAATGATCAAAATATTTAT  739

seq1  GTGTGGAATACATATTTTGATCTGTTGACATTCTTAAAATAATTCGTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAATACATATTTTGATCTGTTGACATTCTTAAAATAATTCGTCTT  789

seq1  CTTAGGCAGTATTAACACTTTTATATACTGGAAGACTGGAGGAGAATAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCAGTATTAACACTTTTATATACTGGAAGACTGGAGGAGAATAGA  839

seq1  CATGTTTGCATTGCACATAAATATAGATGATGCTTAGTTCTTCTATTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGCATTGCACATAAATATAGATGATGCTTAGTTCTTCTATTTAA  889

seq1  TATCTAAATTTATAAAATATTTAAGCTTTTTCTTGTTTGAACTTGGAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAATTTATAAAATATTTAAGCTTTTTCTTGTTTGAACTTGGAATG  939

seq1  AAACCCTAGTTCTTGCATATGCTAGGCAAGTGGTCAATGATTGGGCTATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTAGTTCTTGCATATGCTAGGCAAGTGGTCAATGATTGGGCTATA  989

seq1  CCCAGGTGTGTTCTTATTGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGTGTTCTTATTGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1039

seq1  GTGTGTGTGGTGTCACATGATATGTGTGTAGGTTAGAGAATAACATGTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGGTGTCACATGATATGTGTGTAGGTTAGAGAATAACATGTAG  1089

seq1  GAGTCAGTTCACTCATTCTTCCATGTGTGTTCTAAGGATTGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTTCACTCATTCTTCCATGTGTGTTCTAAGGATTGAATTC  1135