BAC Information

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BAC

Clone NameB6Ng01-120M02
Chromosome13 (Build37)
Map Location 5,796,235 - 5,920,742
singlet/doubletdoublet
Overlap gene1700016G22Rik, Klf6
Upstream geneEG432723
Downstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120M02.bB6Ng01-120M02.g
ACCDH924615DH924616
length2951,004
definitionDH924615|Mus musculus domesticus DNA, BAC clone: B6Ng01-120M02, 5' end.DH924616|Mus musculus domesticus DNA, BAC clone: B6Ng01-120M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,920,448 - 5,920,742)(5,796,235 - 5,797,242)
sequence
tacgcatttttttttcatttgatattatgcttctgagactcgtccgtctt
gatacatttgtttttaagcagttttactacttatatagttaacagctaag
taagccaaagattatttaggccagtaggttaaatgcacttggcctttccc
ttttttattacgagtaatgtagctatatacatttgtacacactctgggtt
gtccgggaaaaggtttattaaggttagaatggtataacattatgtctcaa
tttccctcagagtagtgatattctttttcatgattggtgtgtgtg

gaattcacctcccatcctccttgttaagtgctggctagggagccagaggt
caaatccaacccctgtcattcccagcgctgtgaagtcagacaaatcaaga
ggtgtgttcactgctgccgtgctctacccatatctgtaagaccactgtga
aataaagcttagctcacaaagcattgtatattcagtactcattgctatgc
ctggaacacagtgaatgctcactgagtgttagaggtcaattgcacaacca
acattatcattacaataatgtcccctctcatttacaaccttgaataaaag
atatatccgtctgataaatcatccaaaatccggtgttaattcctggttct
ctctattttcatgtgtgtgttcgtgtccatgttcctatgcatgtgtgtgc
atacacctgcactcacaggtctattctgtcaggaatcttcctcagtcatt
ctccaccttgaagcagactttaaacattaaatagtgggggaagaatgatg
ggaggatgcggatgactgaagatgctagagaccagggcttcagatccccc
tagagctgggggccagctttggtcctgtggaggagtagtatgttctcttt
aacactgagccatctctctagcccttccattttattttttgagacatggt
ctttccctgaacatggagcttatccattggctagaatggctacccaggga
gttccagggctctttctgtttacacttcaccagacgaactgacaaatgtg
gactgctgcacccaggcttataacatgggttcacgttctcgtgctcactt
gggatacactttacccattggccgatctcagcctcctgattccttaaatt
ctcatacatttgacatgttggaaagaatccagcctttgcaatttaattta
tagttttggtataaatgtttgatatttagcattttaataaatatttttca
tttgtgattcctgaatctacatttaaaacataactctaaagtgtaatgtg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5920448_5920742
seq2: B6Ng01-120M02.b_54_348 (reverse)

seq1  CACACACACCAATCATGAAAAAGAATATCACTACTCTGAGGGAAATTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACCAATCATGAAAAAGAATATCACTACTCTGAGGGAAATTGAG  50

seq1  ACATAATGTTATACCATTCTAACCTTAATAAACCTTTTCCCGGACAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGTTATACCATTCTAACCTTAATAAACCTTTTCCCGGACAACCC  100

seq1  AGAGTGTGTACAAATGTATATAGCTACATTACTCGTAATAAAAAAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGTACAAATGTATATAGCTACATTACTCGTAATAAAAAAGGGAA  150

seq1  AGGCCAAGTGCATTTAACCTACTGGCCTAAATAATCTTTGGCTTACTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGTGCATTTAACCTACTGGCCTAAATAATCTTTGGCTTACTTAG  200

seq1  CTGTTAACTATATAAGTAGTAAAACTGCTTAAAAACAAATGTATCAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACTATATAAGTAGTAAAACTGCTTAAAAACAAATGTATCAAGAC  250

seq1  GGACGAGTCTCAGAAGCATAATATCAAATGAAAAAAAAATGCGTA  295
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAGTCTCAGAAGCATAATATCAAATGAAAAAAAAATGCGTA  295


seq1: chr13_5796235_5797242
seq2: B6Ng01-120M02.g_68_1071

seq1  GAATTCACCTCCCATCCTCCTTGTTAAGTGCTGGCTAGGGAGCCAGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCCCATCCTCCTTGTTAAGTGCTGGCTAGGGAGCCAGAGGT  50

seq1  CAAATCCAACCCCTGTCATTCCCAGCGCTGTGAAGTCAGACAAATCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCAACCCCTGTCATTCCCAGCGCTGTGAAGTCAGACAAATCAAGA  100

seq1  GGTGTGTTCACTGCTGCCGTGCTCTACCCATATCTGTAAGACCACTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTTCACTGCTGCCGTGCTCTACCCATATCTGTAAGACCACTGTGA  150

seq1  AATAAAGCTTAGCTCACAAAGCATTGTATATTCAGTACTCATTGCTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCTTAGCTCACAAAGCATTGTATATTCAGTACTCATTGCTATGC  200

seq1  CTGGAACACAGTGAATGCTCACTGAGTGTTAGAGGTCAATTGCACAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACACAGTGAATGCTCACTGAGTGTTAGAGGTCAATTGCACAACCA  250

seq1  ACATTATCATTACAATAATGTCCCCTCTCATTTACAACCTTGAATAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATCATTACAATAATGTCCCCTCTCATTTACAACCTTGAATAAAAG  300

seq1  ATATATCCGTCTGATAAATCATCCAAAATCCGGTGTTAATTCCTGGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCGTCTGATAAATCATCCAAAATCCGGTGTTAATTCCTGGTTCT  350

seq1  CTCTATTTTCATGTGTGTGTTCGTGTCCATGTTCCTATGCATGTGTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTCATGTGTGTGTTCGTGTCCATGTTCCTATGCATGTGTGTGC  400

seq1  ATACACCTGCACTCACAGGTCTATTCTGTCAGGAATCTTCCTCAGTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCTGCACTCACAGGTCTATTCTGTCAGGAATCTTCCTCAGTCATT  450

seq1  CTCCACCTTGAAGCAGACTTTAAACATTAAATAGTGGGGGAAGAATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTTGAAGCAGACTTTAAACATTAAATAGTGGGGGAAGAATGATG  500

seq1  GGAGGATGCGGATGACTGAAGATGCTAGAGACCAGGGCTTCAGATCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGCGGATGACTGAAGATGCTAGAGACCAGGGCTTCAGATCCCCC  550

seq1  TAGAGCTGGGGGCCAGCTTTGGTCCTGTGGAGGAGTAGTATGTTCTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGGGGGCCAGCTTTGGTCCTGTGGAGGAGTAGTATGTTCTCTTT  600

seq1  AACACTGAGCCATCTCTCTAGCCCTTCCATTTTATTTTTTGAGACATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAGCCATCTCTCTAGCCCTTCCATTTTATTTTTTGAGACATGGT  650

seq1  CTTTCCCTGAACATGGAGCTTATCCATTGGCTAGAATGGCTACCCAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTGAACATGGAGCTTATCCATTGGCTAGAATGGCTACCCAGGGA  700

seq1  GTTCCAGGGCTCTTTCTGTTTACACTTCACCAGACGAACTGACAAATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGGCTCTTTCTGTTTACACTTCACCAGACGAACTGACAAATGTG  750

seq1  GACTGCTGCACCCAGGCTTATAACATGGGTTCACGTTCTCGTGCTCACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGCACCCAGGCTTATAACATGGGTTCACGTTCTCGTGCTCACTT  800

seq1  GGGATACACTTTACCCATTGGCCGATCTCAGGCCTCCTGATTCCTTAAAT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGGATACACTTTACCCATTGGCCGATCTCA-GCCTCCTGATTCCTTAAAT  849

seq1  TCTCATACATTTGACATGTTGGAAAGAATCCAGCCTTTTGCAATTT-ATT  899
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TCTCATACATTTGACATGTTGGAAAGAATCCAGCC-TTTGCAATTTAATT  898

seq1  TATAGTTTTGGTAATAAATGTTTTGATATTTTAGCATTTTAATAAATA-T  948
      |||||||||||| ||||||| ||||||| ||||||||||||||||||| |
seq2  TATAGTTTTGGT-ATAAATG-TTTGATA-TTTAGCATTTTAATAAATATT  945

seq1  TTTCATTTGTGATTCCTGAAATCTACATTTAAAACATAACTCTAAGGTGT  998
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  TTTCATTTGTGATTCCTG-AATCTACATTTAAAACATAACTCTAAAGTGT  994

seq1  AATGTGTGTG  1008
      ||||||||||
seq2  AATGTGTGTG  1004


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