BAC Information

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BAC

Clone NameB6Ng01-120N15
Chromosome13 (Build37)
Map Location 13,106,606 - 13,263,352
singlet/doubletdoublet
Overlap geneLOC434483, LOC674723
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2
Downstream genePrl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120N15.bB6Ng01-120N15.g
ACCDH924686DH924687
length1,0871,039
definitionDH924686|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N15, 5' end.DH924687|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,262,253 - 13,263,352)(13,106,606 - 13,107,431)
sequence
gaattcttatctatgtacctccctagcatacaattacactgagattttgg
ttagaaaatggacttttctttgggaaaaacattctaactatctatattca
ttcttaacaataaagtatagttactcagtaaacatagtgaagagtctcca
gtaaattcttccagtgtaaatatggattgttttgtgatcctggcacctat
ctttacagttttgttgagtttttgggtatgtttatcgtttgagagggatt
tcattttaattatctgtgtagcctattttgcattcatttgctcatatttt
agattaatttctctttttatacactccaagttttattgcagtaatactca
cagtatctaagttacagaacacacctgaaagatttgaggttaatttctat
atcaatatgtagagtatggcaaagatttggatttatcttgactaactatt
tattaagtgtagatagggaataaaatctctgtatactccaaaacttgagc
tatgctttccattcttcctttgctatgttgtgcaacaaagcctcaaaatt
gtgggatctctaaatacatttttatatgtacaagaaacattgaaactgtg
ttgcctatggtctataaacattctaggtgaatgtcatgctttgttgttag
agttagattcattttttaattaatagatattggaagatagttatgtgttc
cctcaaagataagcatcatctcccagatgctttgtgcctgacaaacaatc
tttgtcagtagataaatgaggactgtagaagaggtgccgtggaggcacaa
actagtgtgtttcacattagaaatagctttgtgagctttggcataggaac
agaaaaggctttgagtgatccacattataatagagggagtataaacttag
atgggactagtgggaagaaagagaagcgtgcagagagaagcatgagaata
ctagattagtttcaaatgagtttccaggagggacatttgacagtgttgat
gtgatacataactgttctgcaagagtagaatgcagtaggatagtctaatg
agattcagaggtacagatctgaacctgatgtgataat
gaattccagggtaggtgaccatcttaatctgttgggtctacctctataca
aattccagaaccattactgaggtatggggctggaaacagttgctagggaa
gtcaaaactgtgttgacccattgcccttgcctcaggccaagtggctctga
ctagctgccagaagcctgcctggggattttcccagtaactgactcacctg
ggttttcctggacttgtccagttctaggaaatggatttagacctagtctc
cttcactgcccatttgaagcctgtcatggaatcagcctatttcattcctc
tcaaacagggctcacaaaattaactgattgagtttcgtgggaactcacag
agatcagggagcctgtgggaacttgacctatagcctctacatctatttta
tggtgtagtattttgatattcttgtggaaatcctaacagagggaacacag
gttgcctgtgacacttttgcctacttgtgggactctttccacctactcac
ttgccttgtccaacctggttgtgatggcacgtgcctggtcttattgtaat
ttttcatgccatatttaattgtacctggaagacctgctcttttctgaagg
aaggcaggagtggagggaatctgggtgagagaagaggtaaacagaaaaga
ctgaaaggagatgaggaagggggaaatttcagttgagatgtaatatataa
aagaagaattaaaaaatgttttaaaaatcaaggaattgattttttttttt
aaatttagaattgaattaaaggaaaacacaacaccccaaacctatggggt
acaataaatgcagttctcagaagcaagttcatagcactaagtgcctacat
tatcaaacaaaacaaactgggagatcttgtattttgttatttcatgaaga
acttgtttggaattcttgatgggtactgcattaatcttgtagatgcttcc
atcaaattgggcatttttactactttaatcctgccgacatgagcatggga
atatttcccatcttctgagatcatcctcgattctgtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13262253_13263352
seq2: B6Ng01-120N15.b_48_1134 (reverse)

seq1  ATTATCACATTCAGTGTCAGAATCTGTACCTCTTGATTCTTCATTAGACT  50
      ||||||||| ||||  |||| ||||||||||| ||| || ||||||||||
seq2  ATTATCACA-TCAGGTTCAG-ATCTGTACCTC-TGAATC-TCATTAGACT  46

seq1  ATCCTTACTGCATACTACTCTTGCAGGAACAGTTATGTATCACATCAAAC  100
      |||| |||||||| ||||||||||| |||||||||||||||||||| |||
seq2  ATCC-TACTGCATTCTACTCTTGCA-GAACAGTTATGTATCACATC-AAC  93

seq1  ACTGTCAAATGTCCCCTCCTGGAAACTCATTTGAAACTATTCCTAGTATT  150
      |||||||||||| |||||||||||||||||||||||||| | ||||||||
seq2  ACTGTCAAATGT-CCCTCCTGGAAACTCATTTGAAACTAAT-CTAGTATT  141

seq1  CTCCAATGCTTCCTCTCTTGCACGCTTCTCTTTCTTCCCACTAGTCCCAT  200
      |||  |||||| ||||| ||||||||||||||||||||||||||||||||
seq2  CTC--ATGCTT-CTCTC-TGCACGCTTCTCTTTCTTCCCACTAGTCCCAT  187

seq1  CTAAGTTTATACTCCCTCTATTATAATGTGGATCACTCAAAGCCTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTTATACTCCCTCTATTATAATGTGGATCACTCAAAGCCTTTTCT  237

seq1  GTTCCTATGCCAAAGCTCACAAAGCTATTTCTAATGTGAAACACACTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATGCCAAAGCTCACAAAGCTATTTCTAATGTGAAACACACTAGT  287

seq1  TTGTGCCTCCACGGCACCTCTTCTACAGTCCTCATTTATCTACTGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTCCACGGCACCTCTTCTACAGTCCTCATTTATCTACTGACAAA  337

seq1  GATTGTTTGTCAGGCACAAAGCATCTGGGAGATGATGCTTATCTTTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTGTCAGGCACAAAGCATCTGGGAGATGATGCTTATCTTTGAGG  387

seq1  GAACACATAACTATCTTCCAATATCTATTAATTAAAAAATGAATCTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATAACTATCTTCCAATATCTATTAATTAAAAAATGAATCTAACT  437

seq1  CTAACAACAAAGCATGACATTCACCTAGAATGTTTATAGACCATAGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACAAAGCATGACATTCACCTAGAATGTTTATAGACCATAGGCAA  487

seq1  CACAGTTTCAATGTTTCTTGTACATATAAAAATGTATTTAGAGATCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTCAATGTTTCTTGTACATATAAAAATGTATTTAGAGATCCCAC  537

seq1  AATTTTGAGGCTTTGTTGCACAACATAGCAAAGGAAGAATGGAAAGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAGGCTTTGTTGCACAACATAGCAAAGGAAGAATGGAAAGCATA  587

seq1  GCTCAAGTTTTGGAGTATACAGAGATTTTATTCCCTATCTACACTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGTTTTGGAGTATACAGAGATTTTATTCCCTATCTACACTTAATA  637

seq1  AATAGTTAGTCAAGATAAATCCAAATCTTTGCCATACTCTACATATTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTAGTCAAGATAAATCCAAATCTTTGCCATACTCTACATATTGAT  687

seq1  ATAGAAATTAACCTCAAATCTTTCAGGTGTGTTCTGTAACTTAGATACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATTAACCTCAAATCTTTCAGGTGTGTTCTGTAACTTAGATACTG  737

seq1  TGAGTATTACTGCAATAAAACTTGGAGTGTATAAAAAGAGAAATTAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTACTGCAATAAAACTTGGAGTGTATAAAAAGAGAAATTAATCT  787

seq1  AAAATATGAGCAAATGAATGCAAAATAGGCTACACAGATAATTAAAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGAGCAAATGAATGCAAAATAGGCTACACAGATAATTAAAATGA  837

seq1  AATCCCTCTCAAACGATAAACATACCCAAAAACTCAACAAAACTGTAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTCTCAAACGATAAACATACCCAAAAACTCAACAAAACTGTAAAG  887

seq1  ATAGGTGCCAGGATCACAAAACAATCCATATTTACACTGGAAGAATTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGCCAGGATCACAAAACAATCCATATTTACACTGGAAGAATTTAC  937

seq1  TGGAGACTCTTCACTATGTTTACTGAGTAACTATACTTTATTGTTAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTCTTCACTATGTTTACTGAGTAACTATACTTTATTGTTAAGAA  987

seq1  TGAATATAGATAGTTAGAATGTTTTTCCCAAAGAAAAGTCCATTTTCTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAGATAGTTAGAATGTTTTTCCCAAAGAAAAGTCCATTTTCTAA  1037

seq1  CCAAAATCTCAGTGTAATTGTATGCTAGGGAGGTACATAGATAAGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCTCAGTGTAATTGTATGCTAGGGAGGTACATAGATAAGAATTC  1087

seq1: chr13_13106606_13107431
seq2: B6Ng01-120N15.g_286_1108

seq1  TCCAGTTCTAGGAAATGGATTTAGACCTAGTCTCCTTCACTGCCCATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCTAGGAAATGGATTTAGACCTAGTCTCCTTCACTGCCCATTTG  50

seq1  AAGCCTGTCATGGAATCAGCCTATTTCATTCCTCTCAAACAGGGCTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTCATGGAATCAGCCTATTTCATTCCTCTCAAACAGGGCTCACA  100

seq1  AAATTAACTGATTGAGTTTCGTGGGAACTCACAGAGATCAGGGAGCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACTGATTGAGTTTCGTGGGAACTCACAGAGATCAGGGAGCCTGT  150

seq1  GGGAACTTGACCTATAGCCTCTACATCTATTTTATGGTGTAGTATTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTTGACCTATAGCCTCTACATCTATTTTATGGTGTAGTATTTTGA  200

seq1  TATTCTTGTGGAAATCCTAACAGAGGGAACACAGGTTGCCTGTGACACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTGTGGAAATCCTAACAGAGGGAACACAGGTTGCCTGTGACACTT  250

seq1  TTGCCTACTTGTGGGACTCTTTCCACCTACTCACTTGCCTTGTCCAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTACTTGTGGGACTCTTTCCACCTACTCACTTGCCTTGTCCAACCT  300

seq1  GGTTGTGATGGCACGTGCCTGGTCTTATTGTAATTTTTCATGCCATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGATGGCACGTGCCTGGTCTTATTGTAATTTTTCATGCCATATTT  350

seq1  AATTGTACCTGGAAGACCTGCTCTTTTCTGAAGGAAGGCAGGAGTGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTACCTGGAAGACCTGCTCTTTTCTGAAGGAAGGCAGGAGTGGAGG  400

seq1  GAATCTGGGTGAGAGAAGAGGTAAACAGAAAAGACTGAAAGGAGATGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGGTGAGAGAAGAGGTAAACAGAAAAGACTGAAAGGAGATGAGG  450

seq1  AAGGGGGAAATTTCAGTTGAGATGTAATATATAAAAGAAGAATTTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  AAGGGGGAAATTTCAGTTGAGATGTAATATATAAAAGAAGAATT--AAAA  498

seq1  AATGTTTTAAAAATCAAGGAATTGA-TTTTTTTTTTAAATTTAGAATTGA  549
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATGTTTTAAAAATCAAGGAATTGATTTTTTTTTTTAAATTTAGAATTGA  548

seq1  ATTAAAGGAAAACACAACACCCCAAACCTATGGGGTACAATAAATGCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGAAAACACAACACCCCAAACCTATGGGGTACAATAAATGCAGT  598

seq1  TCTCAGAAGCAAGTTCATAGCACTAAGTGCCTACATAATCAAACAAACAA  649
      |||||||||||||||||||||||||||||||||||| ||||||||||  |
seq2  TCTCAGAAGCAAGTTCATAGCACTAAGTGCCTACATTATCAAACAAAACA  648

seq1  AACTGGAAGAATCTTGTA-TTTGTTATTTCATGAAGAACTTGTTTGGAAT  698
      |||||| || |||||||| |||||||||||||||||||||||||||||||
seq2  AACTGGGAG-ATCTTGTATTTTGTTATTTCATGAAGAACTTGTTTGGAAT  697

seq1  TC-TGATGGGTACTGCATTAATC-TGTAGATTGCTTCCATCAAAATTGGC  746
      || |||||||||||||||||||| |||||| ||||||||||||| | |||
seq2  TCTTGATGGGTACTGCATTAATCTTGTAGA-TGCTTCCATCAAATTGGGC  746

seq1  ATTTTTACTACATTAATCCTGCCAAACCATGAGCATGGGAGATATTT-CC  795
      ||||||||||| ||||||||||| |  ||||||||||||| |||||| ||
seq2  ATTTTTACTACTTTAATCCTGCCGA--CATGAGCATGGGA-ATATTTCCC  793

seq1  ATCTTCTGAGATCATCCTCGATTTCTGTCTT  826
      ||||||||||||||||||||| |||||||||
seq2  ATCTTCTGAGATCATCCTCGA-TTCTGTCTT  823