BAC Information

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BAC

Clone NameB6Ng01-121B06
Chromosome13 (Build37)13 (Build37)
Map Location 60,147,943 - 60,148,19753,069,058 - 53,070,089
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNtrk2, LOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
Downstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121B06.bB6Ng01-121B06.g
ACCDH924853DH924854
length2901,034
definitionDH924853|Mus musculus domesticus DNA, BAC clone: B6Ng01-121B06, 5' end.DH924854|Mus musculus domesticus DNA, BAC clone: B6Ng01-121B06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,147,943 - 60,148,197)(53,069,058 - 53,070,089)
sequence
atctattcattcatttgatgtgtgcatgtgcttgtttgtatgtatgtctg
tgtgtgtgtgtgagcatgtgtgtgcatgtgcctgtgagcacacatgcatg
tgtgcatgtgtgcacatgtgtacatgagtgtgtgtgcatatgtgttttgg
tgtgtgtgagcatgtgagcatgtgtgtgcatgtatgcacatgtatgtatt
catgcatgtgtatgtttgtgtttgtgtgtatgtgtgtatgtgtgtgcatg
tgtatatgtgttcctgtgtgtgagcttccccccccccccc
gaattcagtttccagatcccacagtggaagggacagaaccaacttctgaa
tgttgctggcctctgatccccgacatggaccctcatgataatacttaata
agatttgtaaagataaaaggcttaactcctgtctgtggaggtgacgaatt
gattggttaacttccacaattttcacagatagaggttggagggatggctt
cctgttaagaggacccgagttcagttcccagcaaacacacacacacacac
acacacacacacacacacacacacacaccccaggcagctcacgaccagcc
ttgttgtggattttttatatcatttatttgtttgtttgtttgttttttga
gacagggtttctctgtgtagtcctggctgttcttgaactcactttgtaga
ccaggctggcctcgaactcagaaatccgcccgcctctgcctccccagagc
tggggttaaaggcgtgcgccaccatgcctggtgatttttgatatctaaac
aaggacgatgttctgtgctctgtgcagagggcttattcatttctgtttct
gtagaatgtgaactgccacaagtcccctctgggaggtcagaggttggaga
cgcacatgcgtttctgtagtaaccgttggggaacacctgcaggatgaact
cttgttccgaatttatgttgtctatttggatcctttttgcagccttttct
taggtcaggtcttattttaattgccaagtatttaggtcatctgactttaa
atatactcaaggatctgggcttatgaaattcagctcttgcctgtagcagg
ttataaagaaaagcacgtggtacagtgatggtgtcttcacagtagcgtgg
gaaagtattgccagctggcatgacgcgatgcctgcaccccaatttctctt
ttttattttgtgtctttaagcagtcctatcagctaattggtgtattgagt
ttatggccgcttacagggggttaacatcatagaattggcatttcgtgtca
gttattccctaaaaaaagaaacatagtgactaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60147943_60148197
seq2: B6Ng01-121B06.b_119_343

seq1  ATGTGTGTGTGTGTGTGTGT------ACATG--TGTGTGTATGTGTGTCT  42
      |||||||||  ||||  |||      |||||  |||||| |||||||   
seq2  ATGTGTGTGCATGTGCCTGTGAGCACACATGCATGTGTGCATGTGTGCAC  50

seq1  GTGCATGTATATGTGTGTATGCTCCTGCTTGTATGCTTGTGTGTGTGTGT  92
       ||  |||| ||| |||| ||    ||| | | || ||  ||||||||| 
seq2  ATG--TGTACATGAGTGTGTG----TGCATATGTGTTTTGGTGTGTGTGA  94

seq1  GCACGCGCACATACACACACACACACACACACACACACACACACAGGCCA  142
      ||| | |  |||       ||   |  ||||   |   |  ||     ||
seq2  GCATGTGAGCATGTGTGTGCATGTATGCACATGTATGTATTCA---TGCA  141

seq1  TAAGACCCTGCGTGCCTCAGCAGCCTGGCCTATGTAGCACTGAGGAACTT  192
      |  |    |  |||  |     |  ||   ||||      || | |  | 
seq2  TGTGTATGTTTGTGTTT-----GTGTG---TATG------TGTGTATGT-  176

seq1  CCCCTCTAGAGTACACACATGATGAAGACAACTAGAGCAATGCTTTA-AT  241
              | || |       |||   | |  |    |  ||  | |  |
seq2  --------GTGTGC-------ATGTGTATATGTGTTCCTGTGTGTGAGCT  211

seq1  TCCCCCCCCCCCCC  255
      ||||||||||||||
seq2  TCCCCCCCCCCCCC  225

seq1: chr13_53069058_53070089
seq2: B6Ng01-121B06.g_66_1099 (reverse)

seq1  CTTAGTCACTATGTTTCTTTTTTTAGTGAATAACTGACACGAAATGCCAA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTAGTCACTATGTTTCTTTTTTTAGGGAATAACTGACACGAAATGCCAA  50

seq1  TTCTATGATGTT-ACCCCCTGTTAGC-GCCATTAACTCCATTACACCCAT  98
      |||||||||||| ||||||||| ||| ||||| |||| || |||||| ||
seq2  TTCTATGATGTTAACCCCCTGTAAGCGGCCATAAACT-CAATACACCAAT  99

seq1  TAGCTGATAGGACTGCTTAAAGACAC-AAATAAAAAAGAGAAATTGGGGT  147
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGCTGATAGGACTGCTTAAAGACACAAAATAAAAAAGAGAAATTGGGGT  149

seq1  GCAGGCATCGCGTCATGCCAGCTGGC-ATACTTTCCCACGCCTACTGTGA  196
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  GCAGGCATCGCGTCATGCCAGCTGGCAATACTTTCCCACG-CTACTGTGA  198

seq1  AGACACCATCACTGTTACCACGTGCTTTTCTTTATAACCTGCTACAGGCA  246
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGACACCATCACTG-TACCACGTGCTTTTCTTTATAACCTGCTACAGGCA  247

seq1  AGAGCTGAATTTCATAAGCCCAGATCCTTGAGTATATTT-AAGTCAGATG  295
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAGCTGAATTTCATAAGCCCAGATCCTTGAGTATATTTAAAGTCAGATG  297

seq1  ACCTAAATACTTGGCAATTAAAATAAGACCTGACCTAAGAAAAGGCTGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAATACTTGGCAATTAAAATAAGACCTGACCTAAGAAAAGGCTGCA  347

seq1  AAAAGGATCCAAATAGACAACATAAATTCGGAACAAGAGTTCATCCTGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATCCAAATAGACAACATAAATTCGGAACAAGAGTTCATCCTGCA  397

seq1  GGTGTTCCCCAACGGTTACTACAGAAACGCATGTGCGTCTCCAACCTCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCCCCAACGGTTACTACAGAAACGCATGTGCGTCTCCAACCTCTG  447

seq1  ACCTCCCAGAGGGGACTTGTGGCAGTTCACATTCTACAGAAACAGAAATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCAGAGGGGACTTGTGGCAGTTCACATTCTACAGAAACAGAAATG  497

seq1  AATAAGCCCTCTGCACAGAGCACAGAACATCGTCCTTGTTTAGATATCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCCTCTGCACAGAGCACAGAACATCGTCCTTGTTTAGATATCAA  547

seq1  AAATCACCAGGCATGGTGGCGCACGCCTTTAACCCCAGCTCTGGGGAGGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCAGGCATGGTGGCGCACGCCTTTAACCCCAGCTCTGGGGAGGC  597

seq1  AGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAG  647

seq1  TTCAAGAACAGCCAGGACTACACAGAGAAACCCTGTCTCAAAAAACAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAACAGCCAGGACTACACAGAGAAACCCTGTCTCAAAAAACAAAC  697

seq1  AAACAAACAAATAAATGATATAAAAAATCCACAACAAGGCTGGTCGTGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAATAAATGATATAAAAAATCCACAACAAGGCTGGTCGTGAG  747

seq1  CTGCCTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  797

seq1  TGTTTGCTGGGAACTGAACTCGGGTCCTCTTAACAGGAAGCCATCCCTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTGGGAACTGAACTCGGGTCCTCTTAACAGGAAGCCATCCCTCC  847

seq1  AACCTCTATCTGTGAAAATTGTGGAAGTTAACCAATCAATTCGTCACCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTATCTGTGAAAATTGTGGAAGTTAACCAATCAATTCGTCACCTC  897

seq1  CACAGACAGGAGTTAAGCCTTTTATCTTTACAAATCTTATTAAGTATTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAGGAGTTAAGCCTTTTATCTTTACAAATCTTATTAAGTATTAT  947

seq1  CATGAGGGTCCATGTCGGGGATCAGAGGCCAGCAACATTCAGAAGTTGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGGTCCATGTCGGGGATCAGAGGCCAGCAACATTCAGAAGTTGGT  997

seq1  TCTGTCCCTTCCACTGTGGGATCTGGAAACTGAATTC  1032
      |||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTTCCACTGTGGGATCTGGAAACTGAATTC  1034