BAC Information

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BAC

Clone NameB6Ng01-121H09
Chromosome13 (Build37)
Map Location 4,704,125 - 4,705,276
singlet/doubletsinglet
Overlap genenone
Upstream geneCalml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721
Downstream geneEG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121H09.bB6Ng01-121H09.g
ACCDH925138DH925139
length1,2301,130
definitionDH925138|Mus musculus domesticus DNA, BAC clone: B6Ng01-121H09, 5' end.DH925139|Mus musculus domesticus DNA, BAC clone: B6Ng01-121H09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccctgtactggggcatataaagtttataatagcaaggggcctct
cttcccagtgatggccgactaggccatcttctgctacatatgcagctaga
gatacaagctctgggggtactggttagttcatattgttgttccacctata
gtgttgcagaccccttcagctccttgggtgcttccaccccacccagggat
ccataatcccataatcagccaccaaacccagacactattgcatatgccag
aaagattttgctgaagggatcctggttatagctgtcttgtatgaggctat
gccagtgcctggcaaatacagaagtggatgctcacagtcatctataattt
ggaacacagggccccaatggagaagctatctcttgtattctatttgtgat
gcttgcatctatgactcctgacctctttcctaggtgttctatctccatgg
ttgtctccctttgggatttccttatggcttctatttccatttttagatcc
tgggtggttttgttgaattccttcacctgtttggttgtgttttcctgtaa
ttctttaagagattttgtgtttcctctttaagggcttctacctgtctatc
tctgatctcctgtgtttctttaagggaatttttaatgcccttattaaagt
tctctataataattatgaaatgtgatttatttcagaatcttgcttctcca
gtgtcttggggtatccagggcttgctgtggtgggataactggatctgatg
atgccaagtagcctttgtttctgttgtttatgttcttgctcttgcctttt
gccatgtggttatctgtggtattagctataattgctgtctctgactgtgg
cccatccctcctgttagccaatgtgtcagcactcttaggagacaagctct
ctctgggcattatttgggtatggagagtgtgacacagggtcagctctgtg
gtagagatggaaactgggagatcctgtccctggctctgaggcatgggcta
tgcgcagactgcctgtctccagtcaagttgaggtctgaagcccggtatac
agtggtggttattttcactacatgggagaagcattcctcattgtttctgg
atcctggcttctctaagtacaatcaaagctttaaggagaagttaatgcct
tcagttcagtacatgtccaagtcttgaccttcgccgaaccttctccacag
atactttaccatgcgccgagatgtacctat
gaattcagctatatttcatggagtcagacatagaagagattgtttttgtg
tgtaaaataagacaatggttcccttttattgttcagaacttaggatatat
agtcacttactgaagtgtatatgagtgggccataaatttattgttattac
aaaaacactaatccatgaattatgactacattttactcagttctagtgtt
ttaacagcaataagactgattaggcggaaagcagattgtgagcactaatt
tctgactatctaaacctgagacctacatttttagtatcatggtcatagaa
cacagtgaataatgagcctttgaaggcttatgtgacattttcgtggaaac
agaaacctcaaagttaatatgaattgcataaaatacatttaggatgtttt
tttctcaacaagggtgaatggaatattacttaatgagtggtggatttttt
atccttcaaaatgattattattcatgtttgagtcctctcaatgtgtcaca
cagacatggtttaattttaatataagaggctttatatgaaacaatataaa
acaccacttataaatattggcatcacagcaacaggacacattaataccaa
gaaatttcaacaaatattctcagcttcaaagataatcaactatattagac
catcactgtcttagatgcaataggaattcttaattggctgagagttaaac
acaagtatagagctactgctaacactcttcttaaagtttaaggaataaag
tatatccctgttagtttggaagatctggagttatcatgctttaattcctc
aatattttacgattccatagaaaggcacattatttttaaatgactgtttt
catttcaattttcttttgcctctatcttttcaatggcaaaatctgtgtac
ctgtgatctttgtaaatggagcaagacacttcaataataattgggatttt
ccctggagaatacttcattagattctttaaaaacttcactcttactaaac
tttagatgatatttgattatttcagctacaaagacatctagtcctactga
aatattgtgagttgatatatgtctcagcaagacgaatttgttcattggag
attctttaacctagaactgatttctctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4704125_4705276
seq2: B6Ng01-121H09.g_67_1196

seq1  GAATTCAGCTATATTTCATGGAGTCAGACATAGAAGAGATTGTTTTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTATATTTCATGGAGTCAGACATAGAAGAGATTGTTTTTGTG  50

seq1  TGTAAAATAAGACAATGGTTCCCTTTTATTGTTCAGAACTTAGGATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATAAGACAATGGTTCCCTTTTATTGTTCAGAACTTAGGATATAT  100

seq1  AGTCACTTACTGAAGTGTATATGAGTGGGCCATAAATTTATTGTTATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTACTGAAGTGTATATGAGTGGGCCATAAATTTATTGTTATTAC  150

seq1  AAAAACACTAATCCATGAATTATGACTACATTTTACTCAGTTCTAGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACTAATCCATGAATTATGACTACATTTTACTCAGTTCTAGTGTT  200

seq1  TTAACAGCAATAAGACTGATTAGGCGGAAAGCAGATTGTGAGCACTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCAATAAGACTGATTAGGCGGAAAGCAGATTGTGAGCACTAATT  250

seq1  TCTGACTATCTAAACCTGAGACCTACATTTTTAGTATCATGGTCATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTATCTAAACCTGAGACCTACATTTTTAGTATCATGGTCATAGAA  300

seq1  CACAGTGAATAATGAGCCTTTGAAGGCTTATGTGACATTTTCGTGGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAATAATGAGCCTTTGAAGGCTTATGTGACATTTTCGTGGAAAC  350

seq1  AGAAACCTCAAAGTTAATATGAATTGCATAAAATACATTTAGGATGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTCAAAGTTAATATGAATTGCATAAAATACATTTAGGATGTTTT  400

seq1  TTTCTCAACAAGGGTGAATGGAATATTACTTAATGAGTGGTGGATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAACAAGGGTGAATGGAATATTACTTAATGAGTGGTGGATTTTTT  450

seq1  ATCCTTCAAAATGATTATTATTCATGTTTGAGTCCTCTCAATGTGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCAAAATGATTATTATTCATGTTTGAGTCCTCTCAATGTGTCACA  500

seq1  CAGACATGGTTTAATTTTAATATAAGAGGCTTTATATGAAACAATATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGGTTTAATTTTAATATAAGAGGCTTTATATGAAACAATATAAA  550

seq1  ACACCACTTATAAATATTGGCATCACAGCAACAGGACACATTAATACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACTTATAAATATTGGCATCACAGCAACAGGACACATTAATACCAA  600

seq1  GAAATTTCAACAAATATTCTCAGCTTCAAAGATAATCAACTATATTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCAACAAATATTCTCAGCTTCAAAGATAATCAACTATATTAGAC  650

seq1  CATCACTGTCTTAGATGCAATAGGAATTCTTAATTGGCTGAGAGTTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGTCTTAGATGCAATAGGAATTCTTAATTGGCTGAGAGTTAAAC  700

seq1  ACAAGTATAGAGCTACTGCTAACACTCTTCTTAAAGTTTAAGGAATAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTATAGAGCTACTGCTAACACTCTTCTTAAAGTTTAAGGAATAAAG  750

seq1  TATATCCCTGTTAGTTTGGAAGATCTGGAGTTATCATGCTTTAATTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCCTGTTAGTTTGGAAGATCTGGAGTTATCATGCTTTAATTCCTC  800

seq1  AATATTTTACGATTCCATAG-AAGGCACATTATTTTTAAATGACTGTTTT  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATATTTTACGATTCCATAGAAAGGCACATTATTTTTAAATGACTGTTTT  850

seq1  CATTTCAATTTTCTTTTGCCTCTATCTTTTCAAATGGCAAAAATCTGTGT  899
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  CATTTCAATTTTCTTTTGCCTCTATCTTTTC-AATGGC-AAAATCTGTGT  898

seq1  ACCTGTGATCTTTGTAAAATGGAGCAAGACACTTCAATAATAATTGGGAT  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCTGTGATCTTTGT-AAATGGAGCAAGACACTTCAATAATAATTGGGAT  947

seq1  TTTCCCTGGAGAAATACCTCCAATTAAGATTCTTTAAAAAACTTCACCTC  999
      ||||||||||| ||||| ||  ||| ||||||||| |||||||||| |||
seq2  TTTCCCTGGAG-AATACTTC--ATT-AGATTCTTT-AAAAACTTCA-CTC  991

seq1  TTAACCTAAACTTTTAGATGATATTTGATTATTTCAGCTACAAAGACCAT  1049
      |||  |||||| |||||||||||||||||||||||||||||||||| |||
seq2  TTA--CTAAAC-TTTAGATGATATTTGATTATTTCAGCTACAAAGA-CAT  1037

seq1  CTAGGTCCTAACTGAAAATATGTGAGTTGATATTAAATGTCTCAGGGAAA  1099
      ||| ||||| |||||||   |||||||||||||   |||||||||    |
seq2  CTA-GTCCT-ACTGAAATATTGTGAGTTGATAT---ATGTCTCAG---CA  1079

seq1  GGACAGAATTTGTTCACTGAAGATTCTTTTACCCTAGAAACTGA-TTCTC  1148
       ||| ||||||||||| || |||||| |||| ||||| |||||| |||||
seq2  AGAC-GAATTTGTTCATTGGAGATTC-TTTAACCTAG-AACTGATTTCTC  1126

seq1  TCAA  1152
      ||||
seq2  TCAA  1130