BAC Information

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BAC

Clone NameB6Ng01-121I02
Chromosome13 (Build37)
Map Location 5,013,377 - 5,088,751
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121I02.bB6Ng01-121I02.g
ACCDH925170DH925171
length1,1181,127
definitionDH925170|Mus musculus domesticus DNA, BAC clone: B6Ng01-121I02, 5' end.DH925171|Mus musculus domesticus DNA, BAC clone: B6Ng01-121I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,013,377 - 5,014,507)(5,087,610 - 5,088,751)
sequence
gaattctagaattttcagtaggctgttgtgtcactagaaggtgaaaaggc
tcttagctcaggagttattttaatactaagattgctgataaatgcttatg
ctgatttgtaaggcatgttttacagaagctaaaggtcacccatttaaatt
ggattgcagtgggaaattagagagcaaattctgaataagaatataagctg
tttcaagattttaaatgaaattagttttttttcccctggatttcaaagaa
tactttgtgggatttaaaaggtcatatttagtgtcatatggatctcagac
tgttagaccaacagttgtaagcattacaataatcattcaagatagaatgt
ggaacacctgaagaattttatgtcaactggacacaaaccagagtcatttt
agggacggcaactgcagttgagaaaattcctttataagactgagctgtag
gcaagtttatagggcatttttgttttctaaatttttgtctgtatgtctga
gtaatggagttatagattattataggctctaggtgggtgtggggaattga
acccaggtcctctggaagaatagtcagtgctttcaacctctgagccattt
ctccagctctatagggcattttcataattagagattgatatgggacagca
aagaccgttgtgagtggtgccattgctgggccagtggtcttaggtttcta
taaaaataaataagtaaatgaaagcagggtgagcaaacaataggaaccaa
gccattaagcagcaggcttccatggtcttgcatcacctcctgcccctagg
ttccagccttgttgcattttcctgtctttgattttcttcagtgatggact
acaatatggaagtgtaagcccaaataaaccccctcctctccaacttgctt
tagttcatggtgtttcatcatacgatagtaaccctaactaaaacagtggc
tttattgctagtattttatgctttcagattgtaatagatttttgactcat
ttgcctgaaatgttaagcctgaggattctggtcaattgagcagtttcatg
tttttcatgttttgcaaaaatcgaacccctctcatctttaaggaagctac
ccttttatatgctttttc

gaattcctaattttctggtctggatatatgaaagaaattttcttctttcc
agtgcttagtgcattggaatctaggttaaaacattgcattctcctcaatc
cataacctgactttgtgggatttatgtgacatgacttcttagcagaaccc
ttccttaatataaaacggaagtaatgagtttcttgtctttgcttatgtct
ttcagctaaatgggaaccagcagagacaggacgggtctcaatggaactgg
actggatggacacagtagacactactagcactgggaaagaactgaatctc
ctgtttctttggcttgaagattggtctattcacattgaggaaataagaag
tctacaaaactactttaattcaaagattggtagaaacataaatatatatt
ttaaagatttcacctgatatcacatatatgcaaaatcaattgtgagttta
ataataaatgaaactaattcattttcatccaaaatattttaaatcttcaa
aatctaatttaatatcattattgcttaaattagtactatatagatattct
acgtgtattacctaatttagtattcttgttatgttttatgcttggtctat
gtgcagaactgtatttaaaacataatagtgggaacactgtggagagctca
ctcatgataagaaaagactctcaaaatgttactgtttagttgaataaaat
ttaacatgttgaataaattcagtagtcacttgaaaagtatataaacatca
aaacagaggaacattctgtgtgtgtctgtgttgtgactttgatactgagg
aagaagagtggaaatatcccttcagtttgagatttgggaggtcagggtgc
catggaacaccatgccaaggtgaaggaaggattgccattaatgtttaacc
ttaatatttgtttaaggttagtctgccttaattttttcccaggagctgaa
gtatttaaagttgacttggttcagtacagttacataggcttgggctgaag
aaatcaaactcttatacataattattctggaaatattccactatatgatt
tgctgaatcaaatttttatcttcatttttctttttcagatgtgctcattg
tttctagtgatatcagaatgatcttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5013377_5014507
seq2: B6Ng01-121I02.b_48_1165

seq1  GAATTCTAGAATTTTCAGTAGGCTGTTGTGTCACTAGAAGGTGAAAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAATTTTCAGTAGGCTGTTGTGTCACTAGAAGGTGAAAAGGC  50

seq1  TCTTAGCTCAGGAGTTATTTTAATACTAAGATTGCTGATAAATGCTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTCAGGAGTTATTTTAATACTAAGATTGCTGATAAATGCTTATG  100

seq1  CTGATTTGTAAGGCATGTTTTACAGAAGCTAAAGGTCACCCATTTAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGTAAGGCATGTTTTACAGAAGCTAAAGGTCACCCATTTAAATT  150

seq1  GGATTGCAGTGGGAAATTAGAGAGCAAATTCTGAATAAGAATATAAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAGTGGGAAATTAGAGAGCAAATTCTGAATAAGAATATAAGCTG  200

seq1  TTTCAAGATTTTAAATGAAATTAGTTTTTTTTCCCCTGGATTTCAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGATTTTAAATGAAATTAGTTTTTTTTCCCCTGGATTTCAAAGAA  250

seq1  TACTTTGTGGGATTTAAAAGGTCATATTTAGTGTCATATGGATCTCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTGGGATTTAAAAGGTCATATTTAGTGTCATATGGATCTCAGAC  300

seq1  TGTTAGACCAACAGTTGTAAGCATTACAATAATCATTCAAGATAGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGACCAACAGTTGTAAGCATTACAATAATCATTCAAGATAGAATGT  350

seq1  GGAACACCTGAAGAATTTTATGTCAACTGGACACAAACCAGAGTCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCTGAAGAATTTTATGTCAACTGGACACAAACCAGAGTCATTTT  400

seq1  AGGGACGGCAACTGCAGTTGAGAAAATTCCTTTATAAGACTGAGCTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACGGCAACTGCAGTTGAGAAAATTCCTTTATAAGACTGAGCTGTAG  450

seq1  GCAAGTTTATAGGGCATTTTTGTTTTCTAAATTTTTGTCTGTATGTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTATAGGGCATTTTTGTTTTCTAAATTTTTGTCTGTATGTCTGA  500

seq1  GTAATGGAGTTATAGATTATTATAGGCTCTAGGTGGGTGTGGGGAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGAGTTATAGATTATTATAGGCTCTAGGTGGGTGTGGGGAATTGA  550

seq1  ACCCAGGTCCTCTGGAAGAATAGTCAGTGCTTTCAACCTCTGAGCCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTCCTCTGGAAGAATAGTCAGTGCTTTCAACCTCTGAGCCATTT  600

seq1  CTCCAGCTCTATAGGGCATTTTCATAATTAGAGATTGATATGGGACAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTCTATAGGGCATTTTCATAATTAGAGATTGATATGGGACAGCA  650

seq1  AAGACCGTTGTGAGTGGTGCCATTGCTGGGCCAGTGGTCTTAGG-TTCTA  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGACCGTTGTGAGTGGTGCCATTGCTGGGCCAGTGGTCTTAGGTTTCTA  700

seq1  TAAAAATAAATAAGTAAATGAAAGCAGGGTGAGCAAACAATAGGAACCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAATAAGTAAATGAAAGCAGGGTGAGCAAACAATAGGAACCAA  750

seq1  GCCATTAAGCAGCAGGCTTCCATGGTCTTGCATCACCTCCTGCCCCTAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAAGCAGCAGGCTTCCATGGTCTTGCATCACCTCCTGCCCCTAGG  800

seq1  TTCCAGCCTTGTTGCA-TTTCCTGTC-TTGATTTTCTTCAGTGATGGACT  847
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  TTCCAGCCTTGTTGCATTTTCCTGTCTTTGATTTTCTTCAGTGATGGACT  850

seq1  ACAATATGGAAGTGTAAG-CCAAATAAACCCCCTCCTCTCCAACTTGCTT  896
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAATATGGAAGTGTAAGCCCAAATAAACCCCCTCCTCTCCAACTTGCTT  900

seq1  TAGTTCATGGTGTTTCATCATAACGATAGTAACCCTAACTAAAACAGTGG  946
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGTTCATGGTGTTTCATCAT-ACGATAGTAACCCTAACTAAAACAGTGG  949

seq1  CTTTATTGCTAAGTATTTTATGCTTTCAGTATGTAATAGATTTTTGACTC  996
      |||||||||| ||||||||||||||||||  |||||||||||||||||||
seq2  CTTTATTGCT-AGTATTTTATGCTTTCAGATTGTAATAGATTTTTGACTC  998

seq1  AGTTTGCCTTGAAATGTTTAAAGCCTGAGGATTCTGGTCAATTGGAGCAA  1046
      | |||||| |||||||||  ||||||||||||||||||||||| |||| |
seq2  A-TTTGCC-TGAAATGTT--AAGCCTGAGGATTCTGGTCAATT-GAGC-A  1042

seq1  GTTTCAATGTTTTCATTGTTTTGCAAAAAATTTGGAAACACTCTTCAATC  1096
      ||||| |||||||   |||||||||||||   | ||| | ||||   |||
seq2  GTTTC-ATGTTTTTCATGTTTTGCAAAAA---TCGAACCCCTCT--CATC  1086

seq1  TTTAAAGGAAGCATACCCTTTTTATATGCTTTTTC  1131
      ||| |||||||| ||||| ||||||||||||||||
seq2  TTT-AAGGAAGC-TACCC-TTTTATATGCTTTTTC  1118


seq1: chr13_5087610_5088751
seq2: B6Ng01-121I02.g_64_1190 (reverse)

seq1  TAAAGATCATTCTGGATTATCACTAGAAAACAATGAGCACATTCTGAATA  50
      ||||||||||||||   ||||||||| |||||||||||||| |||||  |
seq2  TAAAGATCATTCTG--ATATCACTAG-AAACAATGAGCACA-TCTGA--A  44

seq1  AAAGAAAAAATGAAGAT-AAAATATGAATTTCCAAGCAAAATCATATTAG  99
      |||| |||||||||||| ||||| |||  |||  ||| |||||||| |||
seq2  AAAG-AAAAATGAAGATAAAAATTTGA--TTC--AGC-AAATCATA-TAG  87

seq1  T-GAATATTTTCAGAATAATTTATGTATAAAGAAGTTTGATTTCTTCAGC  148
      | |||||||| |||||||| ||||||||||   |||||||||||||||||
seq2  TGGAATATTTCCAGAATAA-TTATGTATAA--GAGTTTGATTTCTTCAGC  134

seq1  CCAAGCCTATGTAACTGTTAACTGAACCAAGTCAACTTTAAATACTTCAG  198
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  CCAAGCCTATGTAACTGT--ACTGAACCAAGTCAACTTTAAATACTTCAG  182

seq1  CTCCTGGGAAAAAATTAAGGCAGACTAACCTTAAACAAATATTAAGGTT-  247
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCCTGGGAAAAAATTAAGGCAGACTAACCTTAAACAAATATTAAGGTTA  232

seq1  AACATTAATGGCAATCCTTCCTTCACCTTGGCATGGTGTTCCATGGCACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAATGGCAATCCTTCCTTCACCTTGGCATGGTGTTCCATGGCACC  282

seq1  CTGACCTCCCAAATCTCAAACTGAAGGGATATTTCCACTCTTCTTCCTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCCCAAATCTCAAACTGAAGGGATATTTCCACTCTTCTTCCTCA  332

seq1  GTATCAAAGTCACAACACAGACACACACAGAATGTTCCTCTGTTTTGATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAAGTCACAACACAGACACACACAGAATGTTCCTCTGTTTTGATG  382

seq1  TTTATATACTTTTCAAGTGACTACTGAATTTATTCAACATGTTAAATTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATACTTTTCAAGTGACTACTGAATTTATTCAACATGTTAAATTTT  432

seq1  ATTCAACTAAACAGTAACATTTTGAGAGTCTTTTCTTATCATGAGTGAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTAAACAGTAACATTTTGAGAGTCTTTTCTTATCATGAGTGAGC  482

seq1  TCTCCACAGTGTTCCCACTATTATGTTTTAAATACAGTTCTGCACATAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAGTGTTCCCACTATTATGTTTTAAATACAGTTCTGCACATAGA  532

seq1  CCAAGCATAAAACATAACAAGAATACTAAATTAGGTAATACACGTAGAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATAAAACATAACAAGAATACTAAATTAGGTAATACACGTAGAAT  582

seq1  ATCTATATAGTACTAATTTAAGCAATAATGATATTAAATTAGATTTTGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATAGTACTAATTTAAGCAATAATGATATTAAATTAGATTTTGAA  632

seq1  GATTTAAAATATTTTGGATGAAAATGAATTAGTTTCATTTATTATTAAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAATATTTTGGATGAAAATGAATTAGTTTCATTTATTATTAAAC  682

seq1  TCACAATTGATTTTGCATATATGTGATATCAGGTGAAATCTTTAAAATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTGATTTTGCATATATGTGATATCAGGTGAAATCTTTAAAATAT  732

seq1  ATATTTATGTTTCTACCAATCTTTGAATTAAAGTAGTTTTGTAGACTTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATGTTTCTACCAATCTTTGAATTAAAGTAGTTTTGTAGACTTCT  782

seq1  TATTTCCTCAATGTGAATAGACCAATCTTCAAGCCAAAGAAACAGGAGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTCAATGTGAATAGACCAATCTTCAAGCCAAAGAAACAGGAGAT  832

seq1  TCAGTTCTTTCCCAGTGCTAGTAGTGTCTACTGTGTCCATCCAGTCCAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTTTCCCAGTGCTAGTAGTGTCTACTGTGTCCATCCAGTCCAGT  882

seq1  TCCATTGAGACCCGTCCTGTCTCTGCTGGTTCCCATTTAGCTGAAAGACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGAGACCCGTCCTGTCTCTGCTGGTTCCCATTTAGCTGAAAGACA  932

seq1  TAAGCAAAGACAAGAAACTCATTACTTCCGTTTTATATTAAGGAAGGGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAAGACAAGAAACTCATTACTTCCGTTTTATATTAAGGAAGGGTT  982

seq1  CTGCTAAGAAGTCATGTCACATAAATCCCACAAAGTCAGGTTATGGATTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGAAGTCATGTCACATAAATCCCACAAAGTCAGGTTATGGATTG  1032

seq1  AGGAGAATGCAATGTTTTAACCTAGATTCCAATGCACTAAGCACTGGAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATGCAATGTTTTAACCTAGATTCCAATGCACTAAGCACTGGAAA  1082

seq1  GAAGAAAATTTCTTTCATATATCCAGACCAGAAAATTAGGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATTTCTTTCATATATCCAGACCAGAAAATTAGGAATTC  1127


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